Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

5760252 .. 5760638

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAATCTCAAGGGTTGCACATACTCACATCTTTGAGAGAATTGACTCTATGGGGTAAAGATGATCCAGGTCTGGTGTGCTTTCCACCTGGTGAGAATTCGAAGGAGAAGGAGATGCTGCTCCCCAGATCTCTTGTTACATTGATAATTCAAGGCTTCCCAAATCTAAAGAAACTGAGCAAGGACTTCCAATTCCTCACCTCTCTTGAAACTCTTGAAATCTGGAACTGTCCGAAGCTTACAACCATTCCAGAGAAGGGCCTGCCTCTTTCACTTGCGCAACTTGAGATTATTGAGTGTCCTCTACTTGAAGAGAGATGCAGAGGACGATACAGGCCCAAGATAGCACACATCCCTTATGTACGAATTAAGAGCTCCTCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

128

Amino Acids

14.6

Weight (kDa)

8.38

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	279
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	97
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	152, 209, 218, 311
AjnI	CCWGG	2 cut(s)	67, 88
AluBI	AGCT	2 cut(s)	238, 375
AluI	AGCT	2 cut(s)	238, 375
Alw21I	GWGCWC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	2 cut(s)	259, 335
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	259, 336
AsuHPI	GGTGA	2 cut(s)	104, 190
AsuII	TTCGAA	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	69, 90
BfaI	CTAG	1 cut(s)	385
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	69, 90
BmgT120I	GGNCC	2 cut(s)	259, 336
BmrFI	CCNGG	2 cut(s)	69, 90
BmsI	GCATC	2 cut(s)	105, 308
Bpu14I	TTCGAA	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	69, 90
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	105
BshFI	GGCC	2 cut(s)	261, 337
BsiHKAI	GWGCWC	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	257
BsnI	GGCC	2 cut(s)	261, 337
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	64, 128, 381
BspANI	GGCC	2 cut(s)	261, 337
BspCNI	CTCAG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	101
BssMI	GATC	3 cut(s)	64, 128, 381
Bst2UI	CCWGG	2 cut(s)	69, 90
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	67, 131, 384
BstMBI	GATC	3 cut(s)	64, 128, 381
BstNI	CCWGG	2 cut(s)	69, 90
BstSCI	CCNGG	2 cut(s)	67, 88
BstV1I	GCAGC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	261, 337
BtsCI	GGATG	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	259, 336
CsiI	ACCWGGT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	362
CviJI	RGCY	5 cut(s)	156, 238, 261, 337, 375
CviKI_1	RGCY	5 cut(s)	156, 238, 261, 337, 375
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	3 cut(s)	66, 130, 383
DpnII	GATC	3 cut(s)	64, 128, 381
DraIII	CACNNNGTG	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	67, 88
EcoT38I	GRGCYC	1 cut(s)	377
FaiI	YATR	3 cut(s)	23, 52, 360
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	385
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	261, 337
HhaI	GCGC	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	5, 46
HphI	GGTGA	2 cut(s)	104, 190
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	4 cut(s)	206, 215, 223, 251
HpyAV	CCTTC	3 cut(s)	97, 103, 250
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	19, 321
HpyF3I	CTNAG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	64, 128, 381
LmnI	GCTCC	2 cut(s)	126, 380
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	2 cut(s)	105, 308
MabI	ACCWGGT	1 cut(s)	88
MaeI	CTAG	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	3 cut(s)	66, 130, 383
MboI	GATC	3 cut(s)	64, 128, 381
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	5 cut(s)	41, 97, 147, 191, 366
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	206, 211, 276, 312, 317
MseI	TTAA	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	69, 90
MvaI	CCWGG	2 cut(s)	69, 90
NdeII	GATC	3 cut(s)	64, 128, 381
NsbI	TGCGCA	1 cut(s)	279
NspV	TTCGAA	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp124BI	GAGCTC	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	67, 88
PspGI	CCWGG	2 cut(s)	67, 88
PspPI	GGNCC	2 cut(s)	259, 336
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	3 cut(s)	64, 128, 381
Sau96I	GGNCC	2 cut(s)	259, 336
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	69, 90
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	5 cut(s)	73, 91, 203, 240, 377
SexAI	ACCWGGT	1 cut(s)	88
SfaNI	GCATC	2 cut(s)	105, 308
SfuI	TTCGAA	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	9, 284
SmoI	CTYRAG	2 cut(s)	9, 284
Sse9I	AATT	5 cut(s)	41, 97, 147, 191, 366
SspMI	CTAG	1 cut(s)	385
SstI	GAGCTC	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	67, 88
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	2 cut(s)	101, 380
TasI	AATT	5 cut(s)	41, 97, 147, 191, 366
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	97
XspI	CTAG	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.