Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

2703324 .. 2704649

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGGCTTCATAGTATTCCAGAGTTCAGACTCGAAATAGATGGATTCATCAGAGGATTAACAGAGCTTCAAAGATTGTGGATTACTAGTTGTGAAGAGTTGACATGTTTATGGGAGAATGAGAATAGATGGCTACATCGGATTTCTGATATTGTTGGTGGCAACGTTTCTCAGTCTCCCTCTCACTTTGTTCAAGATCTTAGATCACTTCAAGAGCTTCAAATATCTGGATGCTCGAATCTAATTTCTTTTCCAGAGTGTGGTCTGCCCCCTTTTCTTAAATACTTGAAGATTGAGTCGTGTAATTCTTTGACATACTTTGTAAGATTTCAGCTGCCAAGCATAAGACATATTGTGATTGCAAAATGTCAAAGTTTGAAATGGTTGGTCATGGATGCTGAGGAGCTAGAGGACAGTACATCGTCTTCTTGTTGTCTGGAGATGTTGGAGATAACAGAGTGTGCATCTTTGACATCCTTATCAGGCGAAGGAGGCCGACTACCCAGAACGCTCAAATACCTTCACTTAACTGACTGTGAACAATTGGAGTCAATAGTCAATACATTCCAAAAGGACACTTGTCTTGAAGATCTTGCGATAGTGAATCTCATTTCCTTCCCAGGAGGAGGGTTGCCATCCAACTTGACACACTTGATTATCTTCGATTGTGACAAATTGGAAGCACTCCCCAGTGGCATGGACAACCTCAGTTCTCTTCAGACTTTGTGGTTGGGTTTCTGTGTGGGTTTGGCATCCATTCTAGAAGAGGGTTTCCCACCCAACCTATTGAAGCTTCATATTATCAATCCCAAAAGCTGTAAGCCTCTATCAAAGTGGGGGCTTCACCACTTGGATAGACTCCCCTCTCTTAAAGAATTATGGATCAATGGTGTAGATCAAGATCTGGTGTCTTTTCCGCCGAAGGATGTGCTGCTCCCTAAGTCTCTCATTAAACTCACAATCGGAGACTTACCAAATCTAAAGCGCCTGCCATCATCTTTTCAATCACTCACCTCTCTTGAATCCCTTAAAATTAGTTGGTGCCCGAAGCTGGCTTCTCTTATTCCAGAAGAAGAGGATCATCTGCCTCCTTCTCTTACACAGCTTTCAATCTTTGAGGGCTGTCCACTGCTCACAAAGAAATACCAACCAGGCAAAGGACAATGCTGGTCCAAAGTAGCCAACATCCCTTACGTTTATGTTGGAGACTTCAATGACGAAGCCGAAGCCGACCGCAAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

415

Amino Acids

46.45

Weight (kDa)

5.17

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	138 - 346	3.8e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1041
AccB7I	CCANNNNNTGG	1 cut(s)	260
AciI	CCGC	2 cut(s)	917, 1234
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	2 cut(s)	890, 1086
AcuI	CTGAAG	1 cut(s)	701
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	4 cut(s)	260, 626, 1051, 1157
AflIII	ACRYGT	1 cut(s)	104
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	619, 1150
AluBI	AGCT	8 cut(s)	67, 217, 334, 406, 793, 816, 1051, 1105
AluI	AGCT	8 cut(s)	67, 217, 334, 406, 793, 816, 1051, 1105
Alw26I	GTCTC	4 cut(s)	180, 948, 960, 1200
AlwI	GGATC	2 cut(s)	890, 1086
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	334, 931
AspLEI	GCGC	1 cut(s)	987
AspS9I	GGNCC	1 cut(s)	1170
AsuHPI	GGTGA	2 cut(s)	836, 1003
AvaII	GGWCC	1 cut(s)	1170
BaeGI	GKGCMC	1 cut(s)	1046
BanI	GGYRCC	1 cut(s)	1041
BarI	GAAGNNNNNNTAC	2 cut(s)	409, 441
BbsI	GAAGAC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	321, 918
BccI	CCATC	4 cut(s)	35, 123, 643, 1000
BcgI	CGANNNNNNTGC	2 cut(s)	910, 944
BciT130I	CCWGG	2 cut(s)	621, 1152
BcoDI	GTCTC	4 cut(s)	180, 948, 960, 1200
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	3 cut(s)	87, 407, 761
BfoI	RGCGCY	1 cut(s)	988
BglII	AGATCT	3 cut(s)	196, 589, 901
BisI	GCNGC	2 cut(s)	335, 932
BlsI	GCNGC	2 cut(s)	336, 933
Bme1390I	CCNGG	2 cut(s)	621, 1152
Bme18I	GGWCC	1 cut(s)	1170
BmgT120I	GGNCC	1 cut(s)	1170
BmiI	GGNNCC	1 cut(s)	1043
BmrFI	CCNGG	2 cut(s)	621, 1152
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	4 cut(s)	221, 385, 473, 761
BmuI	ACTGGG	1 cut(s)	684
BoxI	GACNNNNGTC	1 cut(s)	579
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	458
Bpu10I	CCTNAGC	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	900
BsaJI	CCNNGG	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 626, 1051, 1157
Bse1I	ACTGG	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	900
BseBI	CCWGG	2 cut(s)	621, 1152
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	7 cut(s)	236, 400, 473, 635, 752, 931, 1185
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	4 cut(s)	260, 626, 1051, 1157
BseMII	CTCAG	3 cut(s)	185, 390, 721
BseNI	ACTGG	1 cut(s)	690
BseRI	GAGGAG	2 cut(s)	416, 639
BseSI	GKGCMC	1 cut(s)	1046
BseXI	GCAGC	2 cut(s)	321, 918
Bsh1285I	CGRYCG	1 cut(s)	1234
BshFI	GGCC	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	1041
BsiEI	CGRYCG	1 cut(s)	1234
BslI	CCNNNNNNNGG	4 cut(s)	260, 626, 1051, 1157
BsmAI	GTCTC	4 cut(s)	180, 948, 960, 1200
BsnI	GGCC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	1046
Bsp143I	GATC	7 cut(s)	196, 203, 589, 882, 895, 901, 1078
BspACI	CCGC	2 cut(s)	917, 1234
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	3 cut(s)	184, 391, 720
BspLI	GGNNCC	1 cut(s)	1043
BspPI	GGATC	2 cut(s)	890, 1086
BspT107I	GGYRCC	1 cut(s)	1041
BsrI	ACTGG	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	7 cut(s)	196, 203, 589, 882, 895, 901, 1078
Bst2UI	CCWGG	2 cut(s)	621, 1152
Bst4CI	ACNGT	2 cut(s)	416, 536
Bst6I	CTCTTC	4 cut(s)	90, 720, 759, 1068
BstC8I	GCNNGC	2 cut(s)	989, 1053
BstDEI	CTNAG	5 cut(s)	171, 200, 399, 707, 939
BstF5I	GGATG	7 cut(s)	236, 400, 473, 635, 752, 931, 1185
BstH2I	RGCGCY	1 cut(s)	988
BstHHI	GCGC	1 cut(s)	987
BstKTI	GATC	7 cut(s)	199, 206, 592, 885, 898, 904, 1081
BstMAI	GTCTC	4 cut(s)	180, 948, 960, 1200
BstMBI	GATC	7 cut(s)	196, 203, 589, 882, 895, 901, 1078
BstMCI	CGRYCG	1 cut(s)	1234
BstMWI	GCNNNNNNNGC	1 cut(s)	492
BstNI	CCWGG	2 cut(s)	621, 1152
BstNSI	RCATGY	1 cut(s)	108
BstPAI	GACNNNNGTC	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	619, 1150
BstSLI	GKGCMC	1 cut(s)	1046
BstV1I	GCAGC	2 cut(s)	321, 918
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	3 cut(s)	196, 589, 901
BstXI	CCANNNNNNTGG	1 cut(s)	697
BstYI	RGATCY	3 cut(s)	196, 589, 901
BsuRI	GGCC	1 cut(s)	495
BtsCI	GGATG	7 cut(s)	236, 400, 473, 635, 752, 931, 1185
BtsI	GCAGTG	1 cut(s)	1127
BtsIMutI	CAGTG	2 cut(s)	697, 1127
Cac8I	GCNNGC	2 cut(s)	989, 1053
CfoI	GCGC	1 cut(s)	987
Cfr13I	GGNCC	1 cut(s)	1170
Csp6I	GTAC	1 cut(s)	417
CspCI	CAANNNNNGTGG	2 cut(s)	59, 94
CviAII	CATG	3 cut(s)	105, 391, 697
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	5 cut(s)	171, 200, 399, 707, 939
DpnI	GATC	7 cut(s)	198, 205, 591, 884, 897, 903, 1080
DpnII	GATC	7 cut(s)	196, 203, 589, 882, 895, 901, 1078
Eam1104I	CTCTTC	4 cut(s)	90, 720, 759, 1068
EarI	CTCTTC	4 cut(s)	90, 720, 759, 1068
EciI	GGCGGA	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	1170
Eco57I	CTGAAG	1 cut(s)	701
EcoRII	CCWGG	2 cut(s)	619, 1150
FaeI	CATG	3 cut(s)	108, 394, 700
FatI	CATG	3 cut(s)	104, 390, 696
Fnu4HI	GCNGC	2 cut(s)	335, 932
FokI	GGATG	7 cut(s)	243, 407, 460, 622, 739, 938, 1172
Fsp4HI	GCNGC	2 cut(s)	335, 932
FspBI	CTAG	3 cut(s)	87, 407, 761
GlaI	GCGC	1 cut(s)	986
GluI	GCNGC	2 cut(s)	335, 932
GsuI	CTGGAG	1 cut(s)	458
HaeII	RGCGCY	1 cut(s)	988
HaeIII	GGCC	1 cut(s)	495
HhaI	GCGC	1 cut(s)	987
Hin1II	CATG	3 cut(s)	108, 394, 700
Hin6I	GCGC	1 cut(s)	985
HinP1I	GCGC	1 cut(s)	985
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	8 cut(s)	30, 45, 238, 296, 548, 604, 858, 1022
HphI	GGTGA	2 cut(s)	836, 1003
Hpy166II	GTNNAC	3 cut(s)	102, 539, 1127
Hpy188I	TCNGA	6 cut(s)	29, 53, 141, 148, 720, 965
Hpy8I	GTNNAC	3 cut(s)	102, 539, 1127
HpyAV	CCTTC	5 cut(s)	482, 530, 625, 916, 1101
HpyCH4III	ACNGT	2 cut(s)	416, 536
HpyCH4IV	ACGT	2 cut(s)	165, 1194
HpyCH4V	TGCA	2 cut(s)	362, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	492
HpyF3I	CTNAG	5 cut(s)	171, 200, 399, 707, 939
HpySE526I	ACGT	2 cut(s)	165, 1194
Hsp92II	CATG	3 cut(s)	108, 394, 700
HspAI	GCGC	1 cut(s)	985
Kzo9I	GATC	7 cut(s)	196, 203, 589, 882, 895, 901, 1078
LmnI	GCTCC	2 cut(s)	403, 939
Lsp1109I	GCAGC	2 cut(s)	321, 918
LweI	GCATC	4 cut(s)	221, 385, 473, 761
MaeI	CTAG	3 cut(s)	87, 407, 761
MaeII	ACGT	2 cut(s)	165, 1194
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	7 cut(s)	198, 205, 591, 884, 897, 903, 1080
MboI	GATC	7 cut(s)	196, 203, 589, 882, 895, 901, 1078
MboII	GAAGA	9 cut(s)	107, 301, 417, 599, 652, 707, 776, 1082, 1085
MfeI	CAATTG	1 cut(s)	542
MflI	RGATCY	3 cut(s)	196, 589, 901
MhlI	GDGCHC	1 cut(s)	1046
MluCI	AATT	6 cut(s)	243, 304, 542, 674, 875, 1032
MlyI	GAGTC	4 cut(s)	24, 305, 557, 852
MmeI	TCCRAC	3 cut(s)	426, 663, 1183
MseI	TTAA	6 cut(s)	59, 279, 527, 870, 951, 1029
MslI	CAYNNNNRTG	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	621, 1152
MunI	CAATTG	1 cut(s)	542
MvaI	CCWGG	2 cut(s)	621, 1152
MwoI	GCNNNNNNNGC	1 cut(s)	492
NdeII	GATC	7 cut(s)	196, 203, 589, 882, 895, 901, 1078
NlaIII	CATG	3 cut(s)	108, 394, 700
NlaIV	GGNNCC	1 cut(s)	1043
NmuCI	GTSAC	1 cut(s)	668
NspI	RCATGY	1 cut(s)	108
PciI	ACATGT	1 cut(s)	104
PfeI	GAWTC	4 cut(s)	45, 238, 604, 1022
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	336, 933
PleI	GAGTC	4 cut(s)	24, 304, 556, 852
PpsI	GAGTC	4 cut(s)	24, 304, 556, 852
PscI	ACATGT	1 cut(s)	104
PshAI	GACNNNNGTC	1 cut(s)	579
Psp1406I	AACGTT	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	619, 1150
PspGI	CCWGG	2 cut(s)	619, 1150
PspN4I	GGNNCC	1 cut(s)	1043
PspPI	GGNCC	1 cut(s)	1170
PsuI	RGATCY	3 cut(s)	196, 589, 901
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	109
SaqAI	TTAA	6 cut(s)	59, 279, 527, 870, 951, 1029
SatI	GCNGC	2 cut(s)	335, 932
Sau3AI	GATC	7 cut(s)	196, 203, 589, 882, 895, 901, 1078
Sau96I	GGNCC	1 cut(s)	1170
SchI	GAGTC	4 cut(s)	24, 305, 557, 852
ScrFI	CCNGG	2 cut(s)	621, 1152
SduI	GDGCHC	1 cut(s)	1046
SfaNI	GCATC	4 cut(s)	221, 385, 473, 761
SinI	GGWCC	1 cut(s)	1170
SmiMI	CAYNNNNRTG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	6 cut(s)	243, 304, 542, 674, 875, 1032
SsiI	CCGC	2 cut(s)	917, 1234
SspMI	CTAG	3 cut(s)	87, 407, 761
StyD4I	CCNGG	2 cut(s)	619, 1150
TaaI	ACNGT	2 cut(s)	416, 536
TaiI	ACGT	2 cut(s)	168, 1197
TaqI	TCGA	3 cut(s)	33, 236, 663
TasI	AATT	6 cut(s)	243, 304, 542, 674, 875, 1032
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	4 cut(s)	45, 238, 604, 1022
Tru1I	TTAA	6 cut(s)	59, 279, 527, 870, 951, 1029
Tru9I	TTAA	6 cut(s)	59, 279, 527, 870, 951, 1029
TscAI	CASTG	2 cut(s)	697, 1134
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	2 cut(s)	334, 931
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	2 cut(s)	37, 785
TspRI	CASTG	2 cut(s)	697, 1134
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	1170
XbaI	TCTAGA	1 cut(s)	760
XceI	RCATGY	1 cut(s)	108
XspI	CTAG	3 cut(s)	87, 407, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.