Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

8268935 .. 8272423

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGTCGTGTAATTCTTTGACATATTTCGTAAGGTATCAAGTACCGCCAAGCATAAGAAGAATAGAGATAGAAAAATGTCAAAATTTGAAACTATTAGTGAAGGATGCTTGGGAGCTAGAGAGTTGTCTGGAGGACTTGGGGATAAAAGAGTGTGCATCTTTGATATCCTTATCAGGCAACGGAGGCCGACTACCCAGAACGCTCAAAGGTCTTTATTTAAGGGACTGTGAACGATTGGAGTCAATAATAAAAACTTTCCACGAGGACACTTGTCTTGAAGATCTTAGGATAGAGAGGTGTGCAAATCTCAAATCCTTACCAGAGGGGCTATGCCATCTCTCCGCTCTTCGCATTTTAATTATACGCAAATGTGGAAGTTTCGTTTCCTTCCCAAGAGGAGGGTTGCCATCCAACCTGATAGACTTTCGTATCGACGATTGTGATCAATTGGAAGCCCTCCCCAGAGGCATGGACAACCTCAGCTCTCTTCAGACTTTGGTGTTGAGACACTGTGGAGGTTTGGCATCCATTCTAGAAGAGGGTTTCCCACCCAACCTAATTGATCTGGAAATTGGCCGTCTCTCAGAGTGGGGGCTTCAACACTTGGACAGACTCACCTCTCTTAAACACTTGGGTATCAGTGGTGTAGATCCAGATCTGGTGTCCTTTCCGCCAAAGGAGGTGCTGCTCCCTAAATCTCTCATTAAACTCGCCATTGGAGAGTTCCCAAATCTGAAGCGCCTGTCATCATCTTTTCAATCACTCACCTCTCTTGAATCCCTTAACATTTGGGATTGCCCAAAGCTAGCATCTATTATTCCAGAAAAAGAGGATCATCTGCCTCTTTCACTTACACAGCTTCGCATCTATCATGACTGTCCGCTGCTCACAAAGAAATACCAACCAGGTAAAGGACGACACTGGCCCAAAGAAATAGCCCACATCCCTTACGTTTATTTTGGAGACTGGGAGGACGAAGCCAAAGCCGACCGCTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

334

Amino Acids

37.84

Weight (kDa)

6.03

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	347
AciI	CCGC	5 cut(s)	47, 345, 674, 884, 994
AclWI	GGATC	2 cut(s)	647, 843
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	2 cut(s)	476, 758
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	3 cut(s)	401, 914, 996
AgsI	TTSAA	5 cut(s)	91, 281, 602, 761, 779
AjnI	CCWGG	1 cut(s)	907
AluBI	AGCT	4 cut(s)	118, 486, 808, 862
AluI	AGCT	4 cut(s)	118, 486, 808, 862
Alw26I	GTCTC	3 cut(s)	502, 587, 960
AlwI	GGATC	2 cut(s)	647, 843
AoxI	GGCC	3 cut(s)	187, 577, 926
ApeKI	GCWGC	2 cut(s)	688, 886
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	744
AspS9I	GGNCC	1 cut(s)	927
AsuHPI	GGTGA	2 cut(s)	610, 760
AsuNHI	GCTAGC	1 cut(s)	808
BaeI	ACNNNNGTAYC	4 cut(s)	415, 448, 622, 655
BauI	CACGAG	1 cut(s)	263
BbvCI	CCTCAGC	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	675, 873
BccI	CCATC	2 cut(s)	345, 418
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	1 cut(s)	909
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	502, 587, 960
BfaI	CTAG	3 cut(s)	119, 536, 809
BfoI	RGCGCY	1 cut(s)	745
BglII	AGATCT	2 cut(s)	283, 658
BisI	GCNGC	2 cut(s)	689, 887
BlsI	GCNGC	2 cut(s)	690, 888
Bme1390I	CCNGG	1 cut(s)	909
BmgT120I	GGNCC	1 cut(s)	927
BmrFI	CCNGG	1 cut(s)	909
BmrI	ACTGGG	1 cut(s)	979
BmsI	GCATC	5 cut(s)	97, 167, 536, 821, 876
BmtI	GCTAGC	1 cut(s)	812
BmuI	ACTGGG	1 cut(s)	979
BoxI	GACNNNNGTC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	482
BsaBI	GATNNNNATC	2 cut(s)	444, 657
Bsc4I	CCNNNNNNNGG	3 cut(s)	401, 914, 996
Bse1I	ACTGG	2 cut(s)	929, 974
Bse8I	GATNNNNATC	2 cut(s)	444, 657
BseBI	CCWGG	1 cut(s)	909
BseGI	GGATG	4 cut(s)	112, 410, 527, 945
BseJI	GATNNNNATC	2 cut(s)	444, 657
BseLI	CCNNNNNNNGG	3 cut(s)	401, 914, 996
BseMII	CTCAG	2 cut(s)	496, 600
BseNI	ACTGG	2 cut(s)	929, 974
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	675, 873
BseYI	CCCAGC	1 cut(s)	996
Bsh1285I	CGRYCG	1 cut(s)	994
BshFI	GGCC	3 cut(s)	189, 579, 928
BsiEI	CGRYCG	1 cut(s)	994
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	401, 914, 996
BsmAI	GTCTC	3 cut(s)	502, 587, 960
BsmBI	CGTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	3 cut(s)	189, 579, 928
Bsp143I	GATC	6 cut(s)	283, 445, 565, 652, 658, 835
BspACI	CCGC	5 cut(s)	47, 345, 674, 884, 994
BspANI	GGCC	3 cut(s)	189, 579, 928
BspCNI	CTCAG	2 cut(s)	495, 599
BspHI	TCATGA	1 cut(s)	874
BspOI	GCTAGC	1 cut(s)	812
BspPI	GGATC	2 cut(s)	647, 843
BspQI	GCTCTTC	1 cut(s)	354
BsrBI	CCGCTC	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	929, 974
BssMI	GATC	6 cut(s)	283, 445, 565, 652, 658, 835
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	909
Bst4CI	ACNGT	3 cut(s)	230, 515, 881
Bst6I	CTCTTC	3 cut(s)	354, 495, 534
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	3 cut(s)	287, 482, 586
BstF5I	GGATG	4 cut(s)	112, 410, 527, 945
BstH2I	RGCGCY	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	6 cut(s)	286, 448, 568, 655, 661, 838
BstMAI	GTCTC	3 cut(s)	502, 587, 960
BstMBI	GATC	6 cut(s)	283, 445, 565, 652, 658, 835
BstMCI	CGRYCG	1 cut(s)	994
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	909
BstPAI	GACNNNNGTC	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	907
BstV1I	GCAGC	2 cut(s)	675, 873
BstX2I	RGATCY	3 cut(s)	283, 652, 658
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	3 cut(s)	283, 652, 658
BsuRI	GGCC	3 cut(s)	189, 579, 928
BtsCI	GGATG	4 cut(s)	112, 410, 527, 945
BtsIMutI	CAGTG	3 cut(s)	511, 649, 922
Cac8I	GCNNGC	1 cut(s)	810
CciI	TCATGA	1 cut(s)	874
CfoI	GCGC	1 cut(s)	744
Cfr13I	GGNCC	1 cut(s)	927
CsiI	ACCWGGT	1 cut(s)	907
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	2 cut(s)	472, 875
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	3 cut(s)	287, 482, 586
DpnI	GATC	6 cut(s)	285, 447, 567, 654, 660, 837
DpnII	GATC	6 cut(s)	283, 445, 565, 652, 658, 835
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	3 cut(s)	354, 495, 534
EarI	CTCTTC	3 cut(s)	354, 495, 534
EciI	GGCGGA	1 cut(s)	663
Eco32I	GATATC	1 cut(s)	168
Eco57I	CTGAAG	2 cut(s)	476, 758
EcoRII	CCWGG	1 cut(s)	907
EcoRV	GATATC	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	2 cut(s)	475, 878
FaiI	YATR	7 cut(s)	25, 56, 334, 365, 473, 876, 1003
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	471, 874
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	689, 887
FokI	GGATG	4 cut(s)	119, 397, 514, 932
Fsp4HI	GCNGC	2 cut(s)	689, 887
FspBI	CTAG	3 cut(s)	119, 536, 809
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	2 cut(s)	689, 887
GsaI	CCCAGC	1 cut(s)	1000
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	745
HaeIII	GGCC	3 cut(s)	189, 579, 928
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	2 cut(s)	475, 878
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HinfI	GANTC	4 cut(s)	5, 242, 615, 779
HphI	GGTGA	2 cut(s)	610, 760
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	3 cut(s)	495, 589, 738
Hpy188III	TCNNGA	8 cut(s)	131, 278, 536, 569, 656, 776, 824, 875
Hpy8I	GTNNAC	1 cut(s)	233
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	97, 400
HpyCH4III	ACNGT	3 cut(s)	230, 515, 881
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	2 cut(s)	158, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	3 cut(s)	287, 482, 586
HpySE526I	ACGT	1 cut(s)	954
Hsp92II	CATG	2 cut(s)	475, 878
HspAI	GCGC	1 cut(s)	742
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	6 cut(s)	283, 445, 565, 652, 658, 835
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	115, 696
Lsp1109I	GCAGC	2 cut(s)	675, 873
LweI	GCATC	5 cut(s)	97, 167, 536, 821, 876
MabI	ACCWGGT	1 cut(s)	907
MaeI	CTAG	3 cut(s)	119, 536, 809
MaeII	ACGT	1 cut(s)	954
MalI	GATC	6 cut(s)	285, 447, 567, 654, 660, 837
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	6 cut(s)	283, 445, 565, 652, 658, 835
MboII	GAAGA	5 cut(s)	72, 293, 341, 482, 551
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	3 cut(s)	283, 652, 658
MluCI	AATT	6 cut(s)	13, 85, 360, 449, 561, 573
MlyI	GAGTC	3 cut(s)	14, 251, 609
MmeI	TCCRAC	1 cut(s)	438
MseI	TTAA	5 cut(s)	221, 359, 627, 708, 786
MspA1I	CMGCKG	2 cut(s)	886, 996
MspR9I	CCNGG	1 cut(s)	909
MunI	CAATTG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	909
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	6 cut(s)	283, 445, 565, 652, 658, 835
NheI	GCTAGC	1 cut(s)	808
NlaIII	CATG	2 cut(s)	475, 878
PagI	TCATGA	1 cut(s)	874
PciSI	GCTCTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	779
PkrI	GCNGC	2 cut(s)	690, 888
PleI	GAGTC	3 cut(s)	13, 250, 609
PpsI	GAGTC	3 cut(s)	13, 250, 609
PshAI	GACNNNNGTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	907
PspFI	CCCAGC	1 cut(s)	996
PspGI	CCWGG	1 cut(s)	907
PspPI	GGNCC	1 cut(s)	927
PsuI	RGATCY	3 cut(s)	283, 652, 658
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	5 cut(s)	221, 359, 627, 708, 786
SatI	GCNGC	2 cut(s)	689, 887
Sau3AI	GATC	6 cut(s)	283, 445, 565, 652, 658, 835
Sau96I	GGNCC	1 cut(s)	927
SchI	GAGTC	3 cut(s)	14, 251, 609
ScrFI	CCNGG	1 cut(s)	909
SexAI	ACCWGGT	1 cut(s)	907
SfaNI	GCATC	5 cut(s)	97, 167, 536, 821, 876
Sse9I	AATT	6 cut(s)	13, 85, 360, 449, 561, 573
SsiI	CCGC	5 cut(s)	47, 345, 674, 884, 994
SspMI	CTAG	3 cut(s)	119, 536, 809
StyD4I	CCNGG	1 cut(s)	907
TaaI	ACNGT	3 cut(s)	230, 515, 881
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	1 cut(s)	435
TasI	AATT	6 cut(s)	13, 85, 360, 449, 561, 573
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	5 cut(s)	221, 359, 627, 708, 786
Tru9I	TTAA	5 cut(s)	221, 359, 627, 708, 786
TscAI	CASTG	3 cut(s)	518, 649, 929
TseI	GCWGC	2 cut(s)	688, 886
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	3 cut(s)	518, 649, 929
XapI	RAATTY	1 cut(s)	85
XbaI	TCTAGA	1 cut(s)	535
XspI	CTAG	3 cut(s)	119, 536, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.