MD03G1026300.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
2136675 .. 2137242
568 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1026300.v1.1.491

Sequence Viewer

Length: 288 bp
ATGGGATCTGAAATCTTTCACACTCTCGTAATCTCTCAGGTATGGGATCTGAAATCTTTGGACGGAAAGGGACTTGAGCACCTCACTTCTCTTCAACAGCTACAAATTGAATGGTGCCAGAGTCTCGAATTCCTGCCGAAAGAGGGTTTGCCGGCATCTCTTTCTTATCTGAGGATCTGGGATTGCCCTTCTCTGAAGAAGAGGTATCGGAACAAGAAGGGAAAATATTGGAGAAACATAGCTCGCATTCCTTTCATAAAGATAGAGAATGAAATCACCGTCCTATGA

Protein Analysis

96

Amino Acids

11.19

Weight (kDa)

9.23

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 114
AclWI GGATC 3 cut(s) 13, 54, 182
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 2 cut(s) 95, 110
AluBI AGCT 2 cut(s) 100, 242
AluI AGCT 2 cut(s) 100, 242
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 3 cut(s) 13, 54, 182
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 268
BanI GGYRCC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 116
BmsI GCATC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 50, 161
BshNI GGYRCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 5, 46, 174
BspCNI CTCAG 2 cut(s) 49, 162
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 3 cut(s) 13, 54, 182
BspT107I GGYRCC 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
BssMI GATC 3 cut(s) 5, 46, 174
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 2 cut(s) 96, 194
BstC8I GCNNGC 2 cut(s) 153, 244
BstDEI CTNAG 2 cut(s) 36, 170
BstKTI GATC 3 cut(s) 8, 49, 177
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 5, 46, 174
BstX2I RGATCY 3 cut(s) 5, 46, 174
BstYI RGATCY 3 cut(s) 5, 46, 174
Cac8I GCNNGC 2 cut(s) 153, 244
Cfr10I RCCGGY 1 cut(s) 151
CviJI RGCY 2 cut(s) 100, 242
CviKI_1 RGCY 2 cut(s) 100, 242
DdeI CTNAG 2 cut(s) 36, 170
DpnI GATC 3 cut(s) 7, 48, 176
DpnII GATC 3 cut(s) 5, 46, 174
Eam1104I CTCTTC 2 cut(s) 96, 194
EarI CTCTTC 2 cut(s) 96, 194
Eco57I CTGAAG 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 128
FaiI YATR 4 cut(s) 43, 239, 257, 286
FaqI GGGAC 1 cut(s) 84
HapII CCGG 1 cut(s) 152
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 5 cut(s) 10, 51, 171, 195, 210
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 198, 211
HpyCH4III ACNGT 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 36, 170
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Kzo9I GATC 3 cut(s) 5, 46, 174
LpnPI CCDG 5 cut(s) 23, 131, 146, 163, 165
LweI GCATC 1 cut(s) 164
MalI GATC 3 cut(s) 7, 48, 176
MboI GATC 3 cut(s) 5, 46, 174
MboII GAAGA 3 cut(s) 83, 208, 211
MflI RGATCY 3 cut(s) 5, 46, 174
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 2 cut(s) 105, 128
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 4 cut(s) 92, 136, 165, 195
MroNI GCCGGC 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 15
MspI CCGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 246
NaeI GCCGGC 1 cut(s) 153
NdeII GATC 3 cut(s) 5, 46, 174
NgoMIV GCCGGC 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 116
PctI GAATGC 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 15
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 116
PsuI RGATCY 3 cut(s) 5, 46, 174
Sau3AI GATC 3 cut(s) 5, 46, 174
SchI GAGTC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 42, 84, 102, 206, 244
SfaNI GCATC 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 105, 128
SspI AATATT 1 cut(s) 227
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 105, 128
TspDTI ATGAA 2 cut(s) 244, 285
TspGWI ACGGA 1 cut(s) 78
XapI RAATTY 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.