pycom11g02540

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001766
Physical Location & Seq
Forward (+)
2087445 .. 2087945
501 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g02540.1

Sequence Viewer

Length: 501 bp
ATGCACAATCTCAACTCTCTTGAGGAATTGAGCATCGACTACCGTGAAGGTTTGACTTTTCCTCCCAACCTCACGTTTCTTGAAATTAACGTCAAGAGCTGTAAGTCATTGTGGGAGTTGGAATTGTGGGGGTTGCACAGACTCACCTCTCTTATAATGGATGGTAAAGAAGACCCGGATACGGTATCGTTTCCAGCCTACATGGTCCGCATGGGGACGCTCTTCCCCAAATCTCTCACTCACCTCTATATAGAAGGCTTCCCGAATCTGAAGAAACTGAGCAGCAAGGGCTTTCAATTCCTCACCTCCCTTCAATCTCTGCAACTCTCCAATTGTCCAAAGCTAGCATCCATTCCAGAGGAGGGTCTGCCTCCTTCACTAGAGAGCCTTTGGATCCTTGGGTGTCCAGTGCTAAAAGAGAGATGCCAACCAGGAAAAGGACGCTACTGGCACAAAATATCCCACATCCATTGCATAAGGATAGATGGCGAGGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

167

Amino Acids

18.94

Weight (kDa)

6.59

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AciI CCGC 1 cut(s) 208
AclWI GGATC 2 cut(s) 388, 401
AcuI CTGAAG 1 cut(s) 290
AfiI CCNNNNNNNGG 3 cut(s) 181, 362, 437
AgsI TTSAA 3 cut(s) 83, 296, 314
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 2 cut(s) 99, 343
AluI AGCT 2 cut(s) 99, 343
AlwI GGATC 2 cut(s) 388, 401
ApeKI GCWGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 136, 233, 295
AsuNHI GCTAGC 1 cut(s) 343
AvaII GGWCC 1 cut(s) 205
BamHI GGATCC 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 294
BccI CCATC 2 cut(s) 155, 479
BciT130I CCWGG 1 cut(s) 432
BciVI GTATCC 1 cut(s) 172
BcnI CCSGG 1 cut(s) 176
BfaI CTAG 2 cut(s) 344, 380
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 176, 432
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 2 cut(s) 176, 432
BmsI GCATC 3 cut(s) 42, 356, 413
BmtI GCTAGC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 362, 437
Bse1I ACTGG 2 cut(s) 407, 452
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 3 cut(s) 166, 347, 465
BseLI CCNNNNNNNGG 3 cut(s) 181, 362, 437
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 407, 452
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 181, 362, 437
BsmFI GGGAC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 393
BspACI CCGC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 395
BspOI GCTAGC 1 cut(s) 347
BspPI GGATC 2 cut(s) 388, 401
BspQI GCTCTTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 469
BsrI ACTGG 2 cut(s) 407, 452
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 2 cut(s) 44, 184
Bst6I CTCTTC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 3 cut(s) 166, 347, 465
BstKTI GATC 1 cut(s) 396
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 2 cut(s) 174, 430
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
BsuI GTATCC 1 cut(s) 172
BtsCI GGATG 3 cut(s) 166, 347, 465
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 2 cut(s) 226, 450
CspCI CAANNNNNGTGG 2 cut(s) 452, 487
CviAII CATG 2 cut(s) 202, 211
CviJI RGCY 6 cut(s) 99, 197, 258, 291, 343, 387
CviKI_1 RGCY 6 cut(s) 99, 197, 258, 291, 343, 387
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 2 cut(s) 205, 214
FaiI YATR 6 cut(s) 155, 203, 212, 249, 251, 476
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 201, 210
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 3 cut(s) 173, 334, 452
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 2 cut(s) 344, 380
GluI GCNGC 1 cut(s) 283
HapII CCGG 1 cut(s) 176
HgaI GACGC 2 cut(s) 226, 450
Hin1II CATG 2 cut(s) 205, 214
HinfI GANTC 2 cut(s) 141, 265
HpaII CCGG 1 cut(s) 176
HphI GGTGA 3 cut(s) 136, 233, 295
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 5 cut(s) 20, 80, 94, 262, 356
HpyAV CCTTC 4 cut(s) 41, 248, 320, 384
HpyCH4III ACNGT 2 cut(s) 44, 184
HpyCH4IV ACGT 2 cut(s) 74, 90
HpyCH4V TGCA 4 cut(s) 4, 136, 322, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 2 cut(s) 74, 90
Hsp92II CATG 2 cut(s) 205, 214
Kzo9I GATC 1 cut(s) 393
LguI GCTCTTC 1 cut(s) 227
LpnPI CCDG 7 cut(s) 189, 207, 369, 417, 420, 433, 444
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 3 cut(s) 42, 356, 413
MaeI CTAG 2 cut(s) 344, 380
MaeII ACGT 2 cut(s) 74, 90
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 3 cut(s) 182, 214, 283
MfeI CAATTG 1 cut(s) 331
MflI RGATCY 1 cut(s) 393
MluCI AATT 5 cut(s) 26, 84, 122, 296, 331
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 99
MseI TTAA 1 cut(s) 87
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 176, 432
MunI CAATTG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 288
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 393
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 2 cut(s) 205, 214
NlaIV GGNNCC 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PsiI TTATAA 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 395
PspPI GGNCC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 393
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 1 cut(s) 393
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 176, 432
SfaNI GCATC 3 cut(s) 42, 356, 413
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 5 cut(s) 26, 84, 122, 296, 331
SsiI CCGC 1 cut(s) 208
SspMI CTAG 2 cut(s) 344, 380
StyD4I CCNGG 2 cut(s) 174, 430
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 2 cut(s) 44, 184
TaiI ACGT 2 cut(s) 77, 93
TaqI TCGA 1 cut(s) 36
TasI AATT 5 cut(s) 26, 84, 122, 296, 331
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 414
TseI GCWGC 1 cut(s) 282
TspRI CASTG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 205
XspI CTAG 2 cut(s) 344, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.