RchiOBHm_Chr1g0321001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001766
Physical Location & Seq
Reverse (-)
8479134 .. 8479662
529 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55108

Sequence Viewer

Length: 300 bp
ATGCTCCCTAAATCCCTCAGTAGACTCGACATTGCAAACTTCCCAAGTCTGAGGTGCCTATCCAGGAAGGCCCTTCAGTCCCTCACCTCTCTTGAATATCTTGAGATTGCTGATTGTCAAAAGCTAGCATCCATTCCAGAGAAGTATCTGCCTTTTTCACTTGCAAAACTTCACATATATGCATGTCCGAAGCTAAAAGATAGATACACCTGCAACACAACATACTGGTCCAAAATAGCTCACATCCCTTGCATACATATTGGAGATGAGTATTTGAGCCCACTGAAGACTCACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

99

Amino Acids

11.33

Weight (kDa)

9.03

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 4 cut(s) 124, 193, 239, 297
AluI AGCT 4 cut(s) 124, 193, 239, 297
AoxI GGCC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 70, 228
AsuHPI GGTGA 1 cut(s) 76
AsuNHI GCTAGC 1 cut(s) 124
AvaII GGWCC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 64
BfaI CTAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 70, 228
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 137
BmtI GCTAGC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 64
BseGI GGATG 2 cut(s) 128, 243
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 31, 41
BseNI ACTGG 1 cut(s) 230
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 281
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 30, 42
BspLI GGNNCC 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 218
BspOI GCTAGC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 17, 50
BstF5I GGATG 2 cut(s) 128, 243
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 128, 243
BtsIMutI CAGTG 1 cut(s) 281
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 70, 228
CviAII CATG 1 cut(s) 183
CviJI RGCY 6 cut(s) 71, 124, 193, 239, 279, 297
CviKI_1 RGCY 6 cut(s) 71, 124, 193, 239, 279, 297
DdeI CTNAG 2 cut(s) 17, 50
Eco24I GRGCYC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 281
FaeI CATG 1 cut(s) 186
FaiI YATR 7 cut(s) 176, 178, 180, 184, 223, 254, 258
FaqI GGGAC 1 cut(s) 64
FatI CATG 1 cut(s) 182
FblI GTMKAC 1 cut(s) 22
FokI GGATG 2 cut(s) 115, 230
FriOI GRGCYC 1 cut(s) 281
FspBI CTAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 186
HinfI GANTC 2 cut(s) 24, 289
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 51, 189
Hpy188III TCNNGA 3 cut(s) 92, 101, 137
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 61, 83
HpyCH4V TGCA 5 cut(s) 35, 164, 182, 213, 252
HpyF3I CTNAG 2 cut(s) 17, 50
Hsp92II CATG 1 cut(s) 186
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 49, 76, 150, 211, 223
LweI GCATC 1 cut(s) 137
MaeI CTAG 1 cut(s) 125
MboII GAAGA 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 281
MlyI GAGTC 2 cut(s) 18, 283
MnlI CCTC 4 cut(s) 26, 45, 92, 97
Mph1103I ATGCAT 1 cut(s) 184
MslI CAYNNNNRTG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
NheI GCTAGC 1 cut(s) 124
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 62
PleI GAGTC 2 cut(s) 18, 283
PpsI GAGTC 2 cut(s) 18, 283
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 70, 228
RseI CAYNNNNRTG 1 cut(s) 177
Sau96I GGNCC 2 cut(s) 70, 228
SchI GAGTC 2 cut(s) 18, 283
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 1 cut(s) 281
SetI ASST 7 cut(s) 56, 89, 126, 195, 212, 241, 299
SfaNI GCATC 1 cut(s) 137
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 62
TaqI TCGA 1 cut(s) 27
TscAI CASTG 1 cut(s) 288
TspRI CASTG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 228
XceI RCATGY 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.