Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

2050984 .. 2052630

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCATTCCGAAGGGAGGATTATCGAGGCGGCTGACAAGCGGCTGAATGGGGAGTTTAATGTGAAAGAAATGAGAAATCTGTTGCTTGTCGGATTAAGTTGTGCTAACCCTGATAACGCGGAGAGGCCTACGATGAGGAGGGTTCTGCAGATTCTGAGCAATGAGGCAGAAATTCAAGCCGTCCCAAGGCGCGATTTGTTGATATATTTTGCAAAATTCCAGATTCCCCAAAATCTTAGAAGAATAGAGATAAGAGGGTGCAAAAATTTGAAATCACTAGTAGATGAGGAGGCTGTTGATTCTTCTTGGTCGTCTTCTTCTCATAGTTGTCTTGAGTACTTGGAAATCCAAGGATGTGAATCTCTGACGTCGTTATCATTGAGTGGCCAGCTTCTCAGGACACTTAAACACCTTCAGATAGTGCATTGTGATCGACTGGAGCTAATCGCAGAGGACGGGTTCTTCCGCGGCAACACTAATTATTGTCTTGAATATATTAAGATCTGGAATTGCCAAAATCTGAAATCCTTACCGGATGGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

182

Amino Acids

20.69

Weight (kDa)

6.11

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	371
AccII	CGCG	3 cut(s)	119, 192, 468
AciI	CCGC	5 cut(s)	29, 40, 119, 466, 468
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	3 cut(s)	171, 215, 265
AcuI	CTGAAG	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	15, 186
AgsI	TTSAA	3 cut(s)	176, 271, 491
AhlI	ACTAGT	1 cut(s)	277
AluBI	AGCT	2 cut(s)	391, 442
AluI	AGCT	2 cut(s)	391, 442
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	125, 385
ApoI	RAATTY	3 cut(s)	171, 215, 265
AspLEI	GCGC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	306
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BcuI	ACTAGT	1 cut(s)	277
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	146
BglII	AGATCT	1 cut(s)	501
BisI	GCNGC	3 cut(s)	30, 41, 469
BlsI	GCNGC	3 cut(s)	31, 42, 470
BmcAI	AGTACT	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	185, 349, 466
BsaWI	WCCGGW	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 186
Bse1I	ACTGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	358
BseDI	CCNNGG	3 cut(s)	185, 349, 466
BseGI	GGATG	2 cut(s)	359, 541
BseJI	GATNNNNATC	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	15, 186
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	146, 409
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	2 cut(s)	151, 302
Bsh1236I	CGCG	3 cut(s)	119, 192, 468
BshFI	GGCC	2 cut(s)	127, 387
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	15, 186
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	127, 387
Bsp143I	GATC	2 cut(s)	430, 501
BspACI	CCGC	5 cut(s)	29, 40, 119, 466, 468
BspANI	GGCC	2 cut(s)	127, 387
BspCNI	CTCAG	2 cut(s)	147, 408
BspFNI	CGCG	3 cut(s)	119, 192, 468
BspMAI	CTGCAG	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	3 cut(s)	185, 349, 466
BssMI	GATC	2 cut(s)	430, 501
BssNI	GRCGYC	1 cut(s)	368
BssT1I	CCWWGG	2 cut(s)	185, 349
BstACI	GRCGYC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	3 cut(s)	155, 236, 395
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	359, 541
BstFNI	CGCG	3 cut(s)	119, 192, 468
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	433, 504
BstMBI	GATC	2 cut(s)	430, 501
BstSFI	CTRYAG	1 cut(s)	146
BstUI	CGCG	3 cut(s)	119, 192, 468
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	127, 387
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	359, 541
Cac8I	GCNNGC	1 cut(s)	389
CaiI	CAGNNNCTG	1 cut(s)	154
CfoI	GCGC	1 cut(s)	192
Cfr42I	CCGCGG	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	337
CviJI	RGCY	9 cut(s)	32, 43, 127, 179, 293, 387, 391, 442, 540
CviKI_1	RGCY	9 cut(s)	32, 43, 127, 179, 293, 387, 391, 442, 540
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	3 cut(s)	155, 236, 395
DpnI	GATC	2 cut(s)	432, 503
DpnII	GATC	2 cut(s)	430, 501
EaeI	YGGCCR	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	185, 349
Eco147I	AGGCCT	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	398
EcoT14I	CCWWGG	2 cut(s)	185, 349
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	185, 349
FaiI	YATR	4 cut(s)	205, 324, 495, 544
FaqI	GGGAC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	30, 41, 469
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	30, 41, 469
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	3 cut(s)	30, 41, 469
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	127, 387
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	4 cut(s)	151, 223, 299, 359
HpaII	CCGG	1 cut(s)	533
Hpy188I	TCNGA	6 cut(s)	10, 92, 156, 366, 417, 522
Hpy188III	TCNNGA	5 cut(s)	220, 332, 397, 488, 505
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	5, 422
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	5 cut(s)	4, 148, 212, 261, 424
HpyF3I	CTNAG	3 cut(s)	155, 236, 395
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	1 cut(s)	368
HspAI	GCGC	1 cut(s)	190
KspI	CCGCGG	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	430, 501
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	6 cut(s)	123, 233, 382, 401, 422, 490
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	368
MalI	GATC	2 cut(s)	432, 503
MboI	GATC	2 cut(s)	430, 501
MboII	GAAGA	5 cut(s)	252, 294, 306, 309, 454
MflI	RGATCY	1 cut(s)	501
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	5 cut(s)	171, 215, 265, 478, 508
MluNI	TGGCCA	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	70
Mox20I	TGGCCA	1 cut(s)	387
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	4 cut(s)	57, 95, 405, 498
Msp20I	TGGCCA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	468
MspI	CCGG	1 cut(s)	533
Mva1269I	GAATGC	1 cut(s)	4
MvnI	CGCG	3 cut(s)	119, 192, 468
NdeII	GATC	2 cut(s)	430, 501
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	127
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	4 cut(s)	151, 223, 299, 359
PkrI	GCNGC	3 cut(s)	31, 42, 470
PstI	CTGCAG	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	501
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SacII	CCGCGG	1 cut(s)	469
SaqAI	TTAA	4 cut(s)	57, 95, 405, 498
SatI	GCNGC	3 cut(s)	30, 41, 469
Sau3AI	GATC	2 cut(s)	430, 501
ScaI	AGTACT	1 cut(s)	338
SetI	ASST	4 cut(s)	371, 393, 414, 444
SfcI	CTRYAG	1 cut(s)	146
Sfr303I	CCGCGG	1 cut(s)	469
SgrBI	CCGCGG	1 cut(s)	469
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SpeI	ACTAGT	1 cut(s)	277
Sse9I	AATT	5 cut(s)	171, 215, 265, 478, 508
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	5 cut(s)	29, 40, 119, 466, 468
SspMI	CTAG	1 cut(s)	278
StuI	AGGCCT	1 cut(s)	127
StyI	CCWWGG	2 cut(s)	185, 349
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	2 cut(s)	24, 433
TasI	AATT	5 cut(s)	171, 215, 265, 478, 508
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	3 cut(s)	32, 43, 471
TfiI	GAWTC	4 cut(s)	151, 223, 299, 359
Tru1I	TTAA	4 cut(s)	57, 95, 405, 498
Tru9I	TTAA	4 cut(s)	57, 95, 405, 498
XapI	RAATTY	3 cut(s)	171, 215, 265
XspI	CTAG	1 cut(s)	278
ZraI	GACGTC	1 cut(s)	369
ZrmI	AGTACT	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.