Rmu_sc0004180.1_g000019

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004180.1
Physical Location & Seq
Reverse (-)
121628 .. 122080
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004180.1_g000019.1.cds

Sequence Viewer

Length: 453 bp
atgccaaaattggtggaggatgaggaggcgatagggggttcttcatcttcttctccttgtttgattcaggatgaggagtcctgtcttgagtatttgagcatatggaactgtccatctttgatatctctatcatccagagtcaagctacccagggcgcttaaacaccttcagatacatacttgcagacaactggagtcaatagctgatgcaatacatgataacatttctcttgagtacattcacatctggtattgctcaaatctccaatatttaccagaaggtctttaccacctctccaatcttcagaagttgagtatttacggttgtagaagtcttgtttccttccagacaagagggttcccaagaagtccttccaacttgagagagtttgagatcaccagtcactactacaaaaagggcctaaggggacacatgaaggatttgtgcctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

17.2

Weight (kDa)

6.64

Isoelectric Point (pI)

74.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 152, 287
AfaI GTAC 1 cut(s) 236
AjnI CCWGG 1 cut(s) 149
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 2 cut(s) 145, 203
AluI AGCT 2 cut(s) 145, 203
AoxI GGCC 1 cut(s) 418
Asp700I GAANNNNTTC 1 cut(s) 370
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 388
AxyI CCTNAGG 1 cut(s) 422
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 151
BfoI RGCGCY 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 212
BpuEI CTTGAG 3 cut(s) 107, 251, 400
BsaJI CCNNGG 2 cut(s) 149, 150
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse1I ACTGG 2 cut(s) 195, 399
Bse21I CCTNAGG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 149, 150
BseGI GGATG 3 cut(s) 25, 76, 131
BseNI ACTGG 2 cut(s) 195, 399
BseRI GAGGAG 2 cut(s) 38, 89
BshFI GGCC 1 cut(s) 420
BslFI GGGAC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 1 cut(s) 420
Bsp143I GATC 1 cut(s) 393
BspANI GGCC 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 359
BsrI ACTGG 2 cut(s) 195, 399
BssECI CCNNGG 2 cut(s) 149, 150
BssMI GATC 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 110, 323
BstDEI CTNAG 1 cut(s) 422
BstF5I GGATG 3 cut(s) 25, 76, 131
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 1 cut(s) 396
BstMBI GATC 1 cut(s) 393
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 422
BsuRI GGCC 1 cut(s) 420
BtsCI GGATG 3 cut(s) 25, 76, 131
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 235
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 2 cut(s) 215, 433
CviJI RGCY 3 cut(s) 145, 203, 420
CviKI_1 RGCY 3 cut(s) 145, 203, 420
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 422
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
Eco32I GATATC 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 152, 287
Eco81I CCTNAGG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 149
EcoRV GATATC 1 cut(s) 123
FaeI CATG 2 cut(s) 218, 436
FaiI YATR 5 cut(s) 101, 103, 177, 216, 434
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FaqI GGGAC 1 cut(s) 441
FatI CATG 2 cut(s) 214, 432
FauNDI CATATG 1 cut(s) 101
FokI GGATG 3 cut(s) 32, 83, 118
GlaI GCGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 1 cut(s) 420
HhaI GCGC 1 cut(s) 157
Hin1II CATG 2 cut(s) 218, 436
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 4 cut(s) 64, 77, 138, 194
HphI GGTGA 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 171, 306
Hpy188III TCNNGA 5 cut(s) 68, 86, 135, 230, 346
HpyAV CCTTC 5 cut(s) 176, 272, 352, 381, 430
HpyCH4III ACNGT 2 cut(s) 110, 323
HpyCH4V TGCA 2 cut(s) 183, 209
HpyF3I CTNAG 1 cut(s) 422
Hsp92II CATG 2 cut(s) 218, 436
HspAI GCGC 1 cut(s) 155
Kzo9I GATC 1 cut(s) 393
LweI GCATC 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 401
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 4 cut(s) 33, 39, 42, 293
MluCI AATT 1 cut(s) 8
MlyI GAGTC 3 cut(s) 86, 147, 203
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 6 cut(s) 10, 16, 19, 67, 302, 347
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
NdeI CATATG 1 cut(s) 101
NdeII GATC 1 cut(s) 393
NlaIII CATG 2 cut(s) 218, 436
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 401
PasI CCCWGGG 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 64
PleI GAGTC 3 cut(s) 85, 146, 202
PpsI GAGTC 3 cut(s) 85, 146, 202
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 418
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 393
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 3 cut(s) 86, 147, 203
ScrFI CCNGG 1 cut(s) 151
SetI ASST 5 cut(s) 147, 168, 205, 283, 294
SfaNI GCATC 1 cut(s) 196
SmlI CTYRAG 3 cut(s) 86, 230, 379
SmoI CTYRAG 3 cut(s) 86, 230, 379
Sse9I AATT 1 cut(s) 8
SspI AATATT 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 110, 323
TasI AATT 1 cut(s) 8
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 33, 449
XmnI GAANNNNTTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.