Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

2752683 .. 2754779

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1033400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCACTTGCTCGAAATTGGACACCCTTCCACATGGCATGAACCTCAACTCTCTCGAGAAATTGTCAATTGCTTACTGCAACGGTTTGACACCCATTCTCGAACAGGGTCTTTCCTCAAACCTTACTCATCTTACAATTTGGAAGCCTTACAATTGTAAGCCCCTCTCCCATTGGGGGTTGACATTGAACAGACTCACCTCTCTTAAGGAGTTGTGGCTCAGTGGTGTAGATCTTCGTCTGTCCTCTTTTCCTCCAGAGGGAGAAGAGATGCTGCTCCCAAAATCTCTCATAATACTCAACATTTCAGACTTCCCAAATCTGAGGCACCCATCAAGTCAGGGCTATCGATTCCTCACCTCTCTTGAATCTCTTGAAATCCGTGATTGCCCAAAGTTAGAATATTTTCCAGAGGATTTAGCCCTTTCACTTACACAACTCCGCATATACGATCACTGTCCAGTGCTAAGAAAGAGATATAAACCAGGTAATGCAAAAGACTGGGCCATAATAGCTCACATCCCCTACATAGATATTGGGGACTTGCCATTAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

187

Amino Acids

21.17

Weight (kDa)

6.29

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	327
AciI	CCGC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	2 cut(s)	177, 260
AflII	CTTAAG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	190, 368, 377
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	1 cut(s)	515
AluI	AGCT	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	3, 504
ApeKI	GCWGC	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	504
AsuHPI	GGTGA	2 cut(s)	190, 349
AvaI	CYCGRG	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	486
BfrI	CTTAAG	1 cut(s)	206
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	486
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	486
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	511
BpmI	CTGGAG	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 260
Bse1I	ACTGG	2 cut(s)	461, 506
BseBI	CCWGG	1 cut(s)	486
BseCI	ATCGAT	1 cut(s)	349
BseGI	GGATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	177, 260
BseMII	CTCAG	2 cut(s)	235, 314
BseNI	ACTGG	2 cut(s)	461, 506
BseXI	GCAGC	1 cut(s)	261
BshFI	GGCC	2 cut(s)	5, 506
BshNI	GGYRCC	1 cut(s)	327
BshVI	ATCGAT	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	177, 260
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	5, 506
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	232, 451
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	2 cut(s)	5, 506
BspCNI	CTCAG	2 cut(s)	234, 315
BspDI	ATCGAT	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	461, 506
BssMI	GATC	2 cut(s)	232, 451
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	86, 458
Bst6I	CTCTTC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	221, 323, 467
BstF5I	GGATG	1 cut(s)	519
BstKTI	GATC	2 cut(s)	235, 454
BstMBI	GATC	2 cut(s)	232, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	5, 506
BsuTUI	ATCGAT	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	229, 454, 468
Cfr13I	GGNCC	1 cut(s)	504
ClaI	ATCGAT	1 cut(s)	349
CsiI	ACCWGGT	1 cut(s)	484
CviAII	CATG	2 cut(s)	35, 40
CviJI	RGCY	8 cut(s)	5, 148, 163, 220, 345, 422, 506, 515
CviKI_1	RGCY	8 cut(s)	5, 148, 163, 220, 345, 422, 506, 515
DdeI	CTNAG	3 cut(s)	221, 323, 467
DpnI	GATC	2 cut(s)	234, 453
DpnII	GATC	2 cut(s)	232, 451
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	38, 43
FaiI	YATR	8 cut(s)	36, 41, 293, 446, 448, 480, 509, 530
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	2 cut(s)	34, 39
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	275
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	5, 506
Hin1II	CATG	2 cut(s)	38, 43
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	3 cut(s)	195, 351, 368
HphI	GGTGA	2 cut(s)	190, 349
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	310, 324
Hpy188III	TCNNGA	7 cut(s)	56, 58, 101, 257, 365, 374, 410
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	86, 458
HpyCH4V	TGCA	2 cut(s)	81, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	3 cut(s)	221, 323, 467
Hsp92II	CATG	2 cut(s)	38, 43
Kzo9I	GATC	2 cut(s)	232, 451
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	8 cut(s)	92, 270, 326, 423, 471, 474, 487, 498
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	261
MabI	ACCWGGT	1 cut(s)	484
MalI	GATC	2 cut(s)	234, 453
MboI	GATC	2 cut(s)	232, 451
MboII	GAAGA	2 cut(s)	227, 278
MfeI	CAATTG	2 cut(s)	69, 154
MflI	RGATCY	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	17, 62, 69, 138, 154
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	189
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	486
MunI	CAATTG	2 cut(s)	69, 154
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	2 cut(s)	232, 451
NlaIII	CATG	2 cut(s)	38, 43
NlaIV	GGNNCC	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	351, 368
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	2 cut(s)	232, 451
Sau96I	GGNCC	1 cut(s)	504
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	486
SetI	ASST	6 cut(s)	48, 126, 203, 362, 490, 517
SexAI	ACCWGGT	1 cut(s)	484
SfaNI	GCATC	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	56, 206
SmoI	CTYRAG	2 cut(s)	56, 206
Sse9I	AATT	5 cut(s)	17, 62, 69, 138, 154
SsiI	CCGC	1 cut(s)	442
SspI	AATATT	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	86, 458
TaqI	TCGA	4 cut(s)	14, 57, 102, 349
TasI	AATT	5 cut(s)	17, 62, 69, 138, 154
TfiI	GAWTC	2 cut(s)	351, 368
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	3 cut(s)	229, 461, 468
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	3 cut(s)	229, 461, 468
Vha464I	CTTAAG	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.