Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

2182763 .. 2183705

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATCTGGAATTGCCAAAATCTGAAATCCTTACCGGATGGCTTATGCCACCTCAACAATCTTCAAACCCTAAGTATTGTGAGCTGTGGAAGTCTTGTTTCCATCCCGAGACTGAGTGGGGGGAGAAGACCCTCCAACCTGAGAGAGATGGAGATCTATGAATGCGAGAAATTGGAGGCGTTGCCCGAAGACATGCACAATCTCAACTCTCTTGAGGATTTGAGGATCGACTACCGTGAAGGTTTGACTTTTCCTCCCAACCTCACGTTGCTTGTAATTTGGAAGGTCAAGAGCTGTAAGTCATTGTGGGAGTTGGAGTGGGGCTTGCACAGACTCACCTCTCTTGCATACTTGGCAATCAATGGTGAAGACCCAGATACGGTGTCGTTTCCACCCGACATGGTACAGACGGAGACGCTTTTCCCCAAATCTCTCACTAACCTCTCAATAGAAGGCTTCCCGAATCTGAAGAAACTGAGCAGCAAGGGCTTTCAATTCCTCACCTCCCTTCAATCTCTTAGACTCGTGGATTGTCCAAAGCTAGCATCCATTCCAGAGGAGGGTCTGCCTCCTTCACTAGAGAGACTTGTCATCCATAGATGTCCAGTGCTAAAAGAGAGATGCCAACCAGGAAATGGACGCTACTGGCACAAAATATCCCACATCCCTTGCATAAAGATAGATTTTAACGAGATATGAAAGCTGATGGTCCAGGTTTTGGAGGTTGAGGAGTGGCTGCTTTGGGAGGCCTTCAATTGGCGACAACTTGGATATTTCTCGGCCAACATTTATTCTCATGGATTCCTATATTTACTTTTTTTCTTTTTTTTTTTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

280

Amino Acids

32.13

Weight (kDa)

6.0

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	635, 718
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	780
AcuI	CTGAAG	1 cut(s)	488
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	5 cut(s)	379, 560, 635, 718, 756
AgsI	TTSAA	4 cut(s)	65, 494, 512, 754
AjnI	CCWGG	2 cut(s)	628, 711
AluBI	AGCT	4 cut(s)	84, 294, 541, 703
AluI	AGCT	4 cut(s)	84, 294, 541, 703
Alw26I	GTCTC	3 cut(s)	103, 407, 577
AlwI	GGATC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	106
AoxI	GGCC	2 cut(s)	747, 780
ApeKI	GCWGC	2 cut(s)	480, 736
AspS9I	GGNCC	1 cut(s)	709
AsuHPI	GGTGA	3 cut(s)	328, 377, 493
AsuNHI	GCTAGC	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	709
BauI	CACGAG	1 cut(s)	524
BbsI	GAAGAC	3 cut(s)	133, 195, 375
BbvI	GCAGC	2 cut(s)	492, 723
BccI	CCATC	4 cut(s)	32, 110, 142, 700
BciT130I	CCWGG	2 cut(s)	630, 713
BcoDI	GTCTC	3 cut(s)	103, 407, 577
BfaI	CTAG	2 cut(s)	542, 578
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	2 cut(s)	481, 737
BlsI	GCNGC	2 cut(s)	482, 738
Bme1390I	CCNGG	2 cut(s)	630, 713
Bme18I	GGWCC	1 cut(s)	709
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	709
BmrFI	CCNGG	2 cut(s)	630, 713
BmsI	GCATC	2 cut(s)	554, 611
BmtI	GCTAGC	1 cut(s)	545
BpiI	GAAGAC	3 cut(s)	133, 195, 375
BpuEI	CTTGAG	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 268, 302, 332
Bsc4I	CCNNNNNNNGG	5 cut(s)	379, 560, 635, 718, 756
Bse1I	ACTGG	2 cut(s)	605, 650
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	630, 713
BseGI	GGATG	5 cut(s)	43, 102, 545, 591, 663
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	5 cut(s)	379, 560, 635, 718, 756
BseMII	CTCAG	3 cut(s)	104, 131, 467
BseNI	ACTGG	2 cut(s)	605, 650
BseRI	GAGGAG	2 cut(s)	572, 743
BseXI	GCAGC	2 cut(s)	492, 723
BshFI	GGCC	2 cut(s)	749, 782
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	5 cut(s)	379, 560, 635, 718, 756
BsmAI	GTCTC	3 cut(s)	103, 407, 577
BsmBI	CGTCTC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	749, 782
BsoBI	CYCGRG	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	3, 153, 225
BspANI	GGCC	2 cut(s)	749, 782
BspCNI	CTCAG	3 cut(s)	105, 132, 468
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	605, 650
BssMI	GATC	3 cut(s)	3, 153, 225
BssSI	CACGAG	1 cut(s)	524
Bst2BI	CACGAG	1 cut(s)	524
Bst2UI	CCWGG	2 cut(s)	630, 713
Bst4CI	ACNGT	2 cut(s)	236, 382
BstC8I	GCNNGC	2 cut(s)	326, 543
BstDEI	CTNAG	5 cut(s)	71, 113, 140, 476, 518
BstF5I	GGATG	5 cut(s)	43, 102, 545, 591, 663
BstKTI	GATC	3 cut(s)	6, 156, 228
BstMAI	GTCTC	3 cut(s)	103, 407, 577
BstMBI	GATC	3 cut(s)	3, 153, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 486
BstNI	CCWGG	2 cut(s)	630, 713
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	628, 711
BstV1I	GCAGC	2 cut(s)	492, 723
BstV2I	GAAGAC	3 cut(s)	133, 195, 375
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	749, 782
BtsCI	GGATG	5 cut(s)	43, 102, 545, 591, 663
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	2 cut(s)	326, 543
Cfr13I	GGNCC	1 cut(s)	709
CseI	GACGC	2 cut(s)	424, 648
Csp6I	GTAC	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	650, 685
CviAII	CATG	3 cut(s)	193, 400, 797
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	5 cut(s)	71, 113, 140, 476, 518
DpnI	GATC	3 cut(s)	5, 155, 227
DpnII	GATC	3 cut(s)	3, 153, 225
EaeI	YGGCCR	1 cut(s)	780
Eco147I	AGGCCT	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	628, 711
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	3 cut(s)	196, 403, 800
FatI	CATG	3 cut(s)	192, 399, 796
Fnu4HI	GCNGC	2 cut(s)	481, 737
FokI	GGATG	5 cut(s)	50, 89, 532, 578, 650
Fsp4HI	GCNGC	2 cut(s)	481, 737
FspBI	CTAG	2 cut(s)	542, 578
GluI	GCNGC	2 cut(s)	481, 737
HaeIII	GGCC	2 cut(s)	749, 782
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	2 cut(s)	424, 648
Hin1II	CATG	3 cut(s)	196, 403, 800
HinfI	GANTC	4 cut(s)	333, 463, 522, 801
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	3 cut(s)	328, 377, 493
Hpy188I	TCNGA	2 cut(s)	24, 468
Hpy188III	TCNNGA	6 cut(s)	7, 106, 212, 289, 460, 554
HpyAV	CCTTC	6 cut(s)	233, 277, 446, 518, 582, 760
HpyCH4III	ACNGT	2 cut(s)	236, 382
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	4 cut(s)	196, 328, 347, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 486
HpyF3I	CTNAG	5 cut(s)	71, 113, 140, 476, 518
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	196, 403, 800
Kzo9I	GATC	3 cut(s)	3, 153, 225
Lsp1109I	GCAGC	2 cut(s)	492, 723
LweI	GCATC	2 cut(s)	554, 611
MaeI	CTAG	2 cut(s)	542, 578
MaeII	ACGT	1 cut(s)	266
MalI	GATC	3 cut(s)	5, 155, 227
MboI	GATC	3 cut(s)	3, 153, 225
MboII	GAAGA	5 cut(s)	53, 138, 200, 380, 481
MfeI	CAATTG	1 cut(s)	754
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	5 cut(s)	10, 170, 276, 494, 754
MlyI	GAGTC	2 cut(s)	327, 516
MmeI	TCCRAC	2 cut(s)	159, 294
MseI	TTAA	1 cut(s)	687
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	630, 713
MunI	CAATTG	1 cut(s)	754
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	2 cut(s)	630, 713
MwoI	GCNNNNNNNGC	2 cut(s)	353, 486
NdeII	GATC	3 cut(s)	3, 153, 225
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	3 cut(s)	196, 403, 800
NmeAIII	GCCGAG	1 cut(s)	758
NspI	RCATGY	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	749
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	463, 801
PflMI	CCANNNNNTGG	2 cut(s)	635, 718
PkrI	GCNGC	2 cut(s)	482, 738
PleI	GAGTC	2 cut(s)	327, 516
PpsI	GAGTC	2 cut(s)	327, 516
Psp6I	CCWGG	2 cut(s)	628, 711
PspGI	CCWGG	2 cut(s)	628, 711
PspPI	GGNCC	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	2 cut(s)	481, 737
Sau3AI	GATC	3 cut(s)	3, 153, 225
Sau96I	GGNCC	1 cut(s)	709
SchI	GAGTC	2 cut(s)	327, 516
ScrFI	CCNGG	2 cut(s)	630, 713
SfaNI	GCATC	2 cut(s)	554, 611
SinI	GGWCC	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	5 cut(s)	10, 170, 276, 494, 754
SseBI	AGGCCT	1 cut(s)	749
SspMI	CTAG	2 cut(s)	542, 578
StuI	AGGCCT	1 cut(s)	749
StyD4I	CCNGG	2 cut(s)	628, 711
TaaI	ACNGT	2 cut(s)	236, 382
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	228
TasI	AATT	5 cut(s)	10, 170, 276, 494, 754
TfiI	GAWTC	2 cut(s)	463, 801
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	1 cut(s)	612
TseI	GCWGC	2 cut(s)	480, 736
TspDTI	ATGAA	2 cut(s)	174, 712
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	612
Van91I	CCANNNNNTGG	2 cut(s)	635, 718
VpaK11BI	GGWCC	1 cut(s)	709
XceI	RCATGY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XspI	CTAG	2 cut(s)	542, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.