Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

36597798 .. 36598403

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32011

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATCAACCTCAACTCTCTCCAGGAGCTGGTGATTGGAAGCTGTGAAGGTTTGGCGTCCATTCTAGAGGAGGGTTTTCCCCCCAACCTAACATCACTTATCCTTTTGAATCCCAGAAATTGTAAGCCACTCACAGACTGGGGCTTGCACTTGCACAGACTCACCTCTCTTACAGAGTTATGCATCCAAGGTGTTGATCAAGACTTGGTTTCCTTTCCACCAGAGGAAATGCTGCTTCCTACATCTCTCATTAAACTTACCATTGGATTCTTCCCGAATCTGAGACGAATATCCAGCCAGGGCCTTCAGGTCCTCACCTCTCTTGAATCTCTTAGAATTGATGATTGCCCAAAGCTTGCATCCATTCCAGAGGACCTGCCCTCTTCACTCACACAACTTTACATCTATGATGACTGTCCTCTGCTTAGAAAGAGATATCAACCAGATATACCACGATACTGGGCCAAAATAAGTCACATTCCGTACATAGAGATTGGAGACTACAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

170

Amino Acids

19.24

Weight (kDa)

4.99

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AccB7I	CCANNNNNTGG	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	109, 326
AjnI	CCWGG	2 cut(s)	21, 297
AluBI	AGCT	3 cut(s)	28, 42, 355
AluI	AGCT	3 cut(s)	28, 42, 355
Alw26I	GTCTC	2 cut(s)	277, 492
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	301, 462
ApeKI	GCWGC	1 cut(s)	232
AspS9I	GGNCC	4 cut(s)	301, 310, 373, 462
AsuHPI	GGTGA	3 cut(s)	43, 154, 307
AvaII	GGWCC	2 cut(s)	310, 373
BbvI	GCAGC	1 cut(s)	219
BciT130I	CCWGG	2 cut(s)	23, 299
BclI	TGATCA	2 cut(s)	3, 196
BcoDI	GTCTC	2 cut(s)	277, 492
BfaI	CTAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	384
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	23, 299
Bme18I	GGWCC	2 cut(s)	310, 373
BmgT120I	GGNCC	4 cut(s)	301, 310, 373, 462
BmrFI	CCNGG	2 cut(s)	23, 299
BmrI	ACTGGG	2 cut(s)	148, 469
BmsI	GCATC	2 cut(s)	192, 368
BmuI	ACTGGG	2 cut(s)	148, 469
BpmI	CTGGAG	1 cut(s)	5
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	187, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	143, 464
BseBI	CCWGG	2 cut(s)	23, 299
BseDI	CCNNGG	2 cut(s)	187, 298
BseGI	GGATG	2 cut(s)	183, 359
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	2 cut(s)	143, 464
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	219
BshFI	GGCC	2 cut(s)	303, 464
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	277, 492
BsmBI	CGTCTC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	303, 464
Bsp143I	GATC	2 cut(s)	3, 196
BspANI	GGCC	2 cut(s)	303, 464
BspCNI	CTCAG	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	143, 464
BssECI	CCNNGG	2 cut(s)	187, 298
BssMI	GATC	2 cut(s)	3, 196
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	2 cut(s)	23, 299
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	1 cut(s)	388
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	146, 357
BstDEI	CTNAG	3 cut(s)	281, 332, 425
BstF5I	GGATG	2 cut(s)	183, 359
BstKTI	GATC	2 cut(s)	6, 199
BstMAI	GTCTC	2 cut(s)	277, 492
BstMBI	GATC	2 cut(s)	3, 196
BstNI	CCWGG	2 cut(s)	23, 299
BstSCI	CCNGG	2 cut(s)	21, 297
BstV1I	GCAGC	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	303, 464
BtsCI	GGATG	2 cut(s)	183, 359
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	146, 357
CaiI	CAGNNNCTG	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	301, 310, 373, 462
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	484
CviJI	RGCY	8 cut(s)	28, 42, 127, 144, 297, 303, 355, 464
CviKI_1	RGCY	8 cut(s)	28, 42, 127, 144, 297, 303, 355, 464
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	3 cut(s)	281, 332, 425
DpnI	GATC	2 cut(s)	5, 198
DpnII	GATC	2 cut(s)	3, 196
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	437
Eco47I	GGWCC	2 cut(s)	310, 373
Eco57I	CTGAAG	1 cut(s)	290
EcoO109I	RGGNCCY	3 cut(s)	301, 310, 373
EcoRII	CCWGG	2 cut(s)	21, 297
EcoRV	GATATC	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	277
FaiI	YATR	4 cut(s)	181, 408, 449, 488
FbaI	TGATCA	2 cut(s)	3, 196
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	2 cut(s)	170, 346
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	303, 464
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	5 cut(s)	109, 159, 267, 277, 326
HphI	GGTGA	3 cut(s)	43, 154, 307
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	5 cut(s)	65, 200, 274, 323, 368
HpyAV	CCTTC	2 cut(s)	41, 314
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4V	TGCA	4 cut(s)	148, 154, 183, 359
HpyF3I	CTNAG	3 cut(s)	281, 332, 425
Hsp92I	GRCGYC	1 cut(s)	56
Ksp22I	TGATCA	2 cut(s)	3, 196
Kzo9I	GATC	2 cut(s)	3, 196
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	2 cut(s)	192, 368
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	2 cut(s)	5, 198
MboI	GATC	2 cut(s)	3, 196
MboII	GAAGA	2 cut(s)	262, 375
MluCI	AATT	2 cut(s)	118, 336
MlyI	GAGTC	1 cut(s)	153
Mph1103I	ATGCAT	1 cut(s)	185
MseI	TTAA	1 cut(s)	252
MspR9I	CCNGG	2 cut(s)	23, 299
MvaI	CCWGG	2 cut(s)	23, 299
NdeII	GATC	2 cut(s)	3, 196
NmuCI	GTSAC	1 cut(s)	473
NsiI	ATGCAT	1 cut(s)	185
PfeI	GAWTC	4 cut(s)	109, 267, 277, 326
PflMI	CCANNNNNTGG	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PpuMI	RGGWCCY	2 cut(s)	310, 373
Psp5II	RGGWCCY	2 cut(s)	310, 373
Psp6I	CCWGG	2 cut(s)	21, 297
PspGI	CCWGG	2 cut(s)	21, 297
PspPI	GGNCC	4 cut(s)	301, 310, 373, 462
PspPPI	RGGWCCY	2 cut(s)	310, 373
PstNI	CAGNNNCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	3, 196
Sau96I	GGNCC	4 cut(s)	301, 310, 373, 462
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	23, 299
SfaNI	GCATC	2 cut(s)	192, 368
SinI	GGWCC	2 cut(s)	310, 373
Sse9I	AATT	2 cut(s)	118, 336
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	21, 297
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	416
TasI	AATT	2 cut(s)	118, 336
TfiI	GAWTC	4 cut(s)	109, 267, 277, 326
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	310, 373
XbaI	TCTAGA	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XspI	CTAG	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.