Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000576.1

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

43245 .. 45389

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000576.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgacacatccgactcttctcaagtgcaccgaagccacatccccgccacctcacctacacccaacactggcgcgcgttgattccgtcaccttgtcaaaacgggtcggagaattaacctgggagctgacatgttcattgccgaatgaggatggatttttgcaaaaccttatgtcacttcgtcatctgagcattgaaggtaactcacatcttgttcaattgcatcacctcagcttactacaagagcttcacattgataagtggccaagcctagtttcttttccattggctagtttgccaccttctcttaaagatataaagattcgaggttgcgattctcttacttattttgcaagatatcagataccgccaagtctaaggagaatagagataaatagatgccaaaatttgaaatcattggtggaggatgaggaggcgatatggggctcttcatcttcctctccttgtttgattcaggatgaggagtcctgtttcgagtatttgagcatatggaactatggtctttaccacctctccaatcttcagaagttgagtatttacagttgtagaagtcttgtttccttcccgacaggagggttcccaagaagtccttccaatttgagagagtttgagatcaccagttgtgagaaattggaggccttacccaaaggcatgcacaacctcaactctcttgagatattaaggatcccctattgtgaaggtttcacttccttcctagaagaagggttgcctcctaaccttcagtctcttaaagttctgaatctcaagagtttggtgaagatccggaactggtttcctttccacccaagaaagagatggtgcttcccaaatctctcattaagcttaatcgaagactttccggatctcaagtatctacccagcaaagggtttcagtccctcacatctcttaaaagactctttatctggagttgccccaaactactgtccattccagatgaaggcaggcttctttcactgacacaacttagtatccgtcactgtccactgctagaagtgacatgcaaaccaggtaaaggtcagtattggcgctccatagcccacatcccttacatatggttgggagacaagagaattcaagctccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

374

Amino Acids

42.8

Weight (kDa)

8.5

Isoelectric Point (pI)

61.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	73, 75
AccIII	TCCGGA	2 cut(s)	801, 877
AciI	CCGC	2 cut(s)	44, 365
AclWI	GGATC	4 cut(s)	697, 710, 793, 888
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	403, 1110
AcuI	CTGAAG	2 cut(s)	524, 743
AfiI	CCNNNNNNNGG	6 cut(s)	67, 590, 902, 903, 977, 1052
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	194, 215, 409, 1115
AjnI	CCWGG	2 cut(s)	116, 1045
AjuI	GAANNNNNNNTTGG	4 cut(s)	256, 288, 592, 624
AluBI	AGCT	5 cut(s)	124, 231, 244, 861, 1118
AluI	AGCT	5 cut(s)	124, 231, 244, 861, 1118
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	768, 1095
Alw44I	GTGCAC	1 cut(s)	25
AlwI	GGATC	4 cut(s)	697, 710, 793, 888
Aor13HI	TCCGGA	2 cut(s)	801, 877
AoxI	GGCC	2 cut(s)	260, 654
ApaLI	GTGCAC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	403, 1110
Asp700I	GAANNNNTTC	2 cut(s)	607, 873
AspLEI	GCGC	3 cut(s)	73, 75, 1068
AsuHPI	GGTGA	5 cut(s)	44, 79, 215, 625, 805
BaeGI	GKGCMC	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	702
BanII	GRGCYC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	227
BccI	CCATC	2 cut(s)	143, 828
BciT130I	CCWGG	2 cut(s)	118, 1047
BciVI	GTATCC	1 cut(s)	1019
BcoDI	GTCTC	2 cut(s)	768, 1095
BfaI	CTAG	4 cut(s)	269, 288, 734, 1028
BfoI	RGCGCY	1 cut(s)	1069
BfuI	GTATCC	1 cut(s)	1019
Bme1390I	CCNGG	2 cut(s)	118, 1047
BmiI	GGNNCC	2 cut(s)	596, 704
BmrFI	CCNGG	2 cut(s)	118, 1047
BmsI	GCATC	2 cut(s)	229, 386
BpiI	GAAGAC	1 cut(s)	876
BpmI	CTGGAG	1 cut(s)	964
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	4 cut(s)	5, 710, 767, 869
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	2 cut(s)	801, 877
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 590, 902, 903, 977, 1052
Bse1I	ACTGG	3 cut(s)	72, 636, 812
Bse3DI	GCAATG	1 cut(s)	134
BseAI	TCCGGA	2 cut(s)	801, 877
BseBI	CCWGG	2 cut(s)	118, 1047
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	6 cut(s)	7, 38, 154, 430, 481, 1080
BseLI	CCNNNNNNNGG	6 cut(s)	67, 590, 902, 903, 977, 1052
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	2 cut(s)	176, 241
BseNI	ACTGG	3 cut(s)	72, 636, 812
BsePI	GCGCGC	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	443, 494
BseSI	GKGCMC	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	896
Bsh1236I	CGCG	2 cut(s)	73, 75
BshFI	GGCC	2 cut(s)	262, 656
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	802, 878
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	6 cut(s)	67, 590, 902, 903, 977, 1052
BsmAI	GTCTC	2 cut(s)	768, 1095
BsmFI	GGGAC	1 cut(s)	898
BsnI	GGCC	2 cut(s)	262, 656
Bsp1286I	GDGCHC	2 cut(s)	29, 446
Bsp13I	TCCGGA	2 cut(s)	801, 877
Bsp143I	GATC	4 cut(s)	630, 702, 798, 880
BspACI	CCGC	2 cut(s)	44, 365
BspANI	GGCC	2 cut(s)	262, 656
BspCNI	CTCAG	2 cut(s)	177, 240
BspEI	TCCGGA	2 cut(s)	801, 877
BspFNI	CGCG	2 cut(s)	73, 75
BspLI	GGNNCC	2 cut(s)	596, 704
BspPI	GGATC	4 cut(s)	697, 710, 793, 888
BspQI	GCTCTTC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	72, 636, 812
BssECI	CCNNGG	1 cut(s)	117
BssHII	GCGCGC	1 cut(s)	71
BssMI	GATC	4 cut(s)	630, 702, 798, 880
Bst2UI	CCWGG	2 cut(s)	118, 1047
Bst4CI	ACNGT	3 cut(s)	560, 963, 1019
Bst6I	CTCTTC	2 cut(s)	21, 451
BstC8I	GCNNGC	3 cut(s)	73, 671, 983
BstDEI	CTNAG	4 cut(s)	185, 227, 374, 1004
BstF5I	GGATG	6 cut(s)	7, 38, 154, 430, 481, 1080
BstFNI	CGCG	2 cut(s)	73, 75
BstH2I	RGCGCY	1 cut(s)	1069
BstHHI	GCGC	3 cut(s)	73, 75, 1068
BstKTI	GATC	4 cut(s)	633, 705, 801, 883
BstMAI	GTCTC	2 cut(s)	768, 1095
BstMBI	GATC	4 cut(s)	630, 702, 798, 880
BstNI	CCWGG	2 cut(s)	118, 1047
BstNSI	RCATGY	3 cut(s)	132, 673, 1041
BstSCI	CCNGG	2 cut(s)	116, 1045
BstSLI	GKGCMC	1 cut(s)	29
BstUI	CGCG	2 cut(s)	73, 75
BstV2I	GAAGAC	1 cut(s)	876
BstX2I	RGATCY	3 cut(s)	702, 798, 880
BstYI	RGATCY	3 cut(s)	702, 798, 880
BsuI	GTATCC	1 cut(s)	1019
BsuRI	GGCC	2 cut(s)	262, 656
BtsCI	GGATG	6 cut(s)	7, 38, 154, 430, 481, 1080
BtsI	GCAGTG	1 cut(s)	1022
BtsIMutI	CAGTG	4 cut(s)	65, 992, 1015, 1022
Cac8I	GCNNGC	3 cut(s)	73, 671, 983
CfoI	GCGC	3 cut(s)	73, 75, 1068
CsiI	ACCWGGT	1 cut(s)	1045
CviAII	CATG	3 cut(s)	129, 670, 1038
DdeI	CTNAG	4 cut(s)	185, 227, 374, 1004
DpnI	GATC	4 cut(s)	632, 704, 800, 882
DpnII	GATC	4 cut(s)	630, 702, 798, 880
EaeI	YGGCCR	1 cut(s)	260
Eam1104I	CTCTTC	2 cut(s)	21, 451
EarI	CTCTTC	2 cut(s)	21, 451
Eco147I	AGGCCT	1 cut(s)	656
Eco24I	GRGCYC	1 cut(s)	446
Eco32I	GATATC	1 cut(s)	356
Eco57I	CTGAAG	2 cut(s)	524, 743
EcoRI	GAATTC	1 cut(s)	1110
EcoRII	CCWGG	2 cut(s)	116, 1045
EcoRV	GATATC	1 cut(s)	356
EcoT38I	GRGCYC	1 cut(s)	446
FaeI	CATG	3 cut(s)	132, 673, 1041
FalI	AAGNNNNNCTT	4 cut(s)	592, 624, 969, 1001
FaqI	GGGAC	1 cut(s)	898
FatI	CATG	3 cut(s)	128, 669, 1037
FauI	CCCGC	1 cut(s)	51
FauNDI	CATATG	2 cut(s)	506, 1091
FokI	GGATG	5 cut(s)	25, 161, 437, 488, 1067
FriOI	GRGCYC	1 cut(s)	446
FspBI	CTAG	4 cut(s)	269, 288, 734, 1028
GlaI	GCGC	3 cut(s)	72, 74, 1067
GsaI	CCCAGC	1 cut(s)	900
GsuI	CTGGAG	1 cut(s)	964
HaeII	RGCGCY	1 cut(s)	1069
HaeIII	GGCC	2 cut(s)	262, 656
HapII	CCGG	2 cut(s)	802, 878
HhaI	GCGC	3 cut(s)	73, 75, 1068
Hin1II	CATG	3 cut(s)	132, 673, 1041
Hin6I	GCGC	3 cut(s)	71, 73, 1066
HinP1I	GCGC	3 cut(s)	71, 73, 1066
HindIII	AAGCTT	1 cut(s)	859
HinfI	GANTC	8 cut(s)	13, 80, 319, 332, 469, 482, 778, 933
HpaII	CCGG	2 cut(s)	802, 878
HphI	GGTGA	5 cut(s)	44, 79, 215, 625, 805
Hpy166II	GTNNAC	2 cut(s)	27, 1022
Hpy188I	TCNGA	6 cut(s)	12, 107, 186, 360, 543, 777
Hpy188III	TCNNGA	8 cut(s)	473, 583, 689, 784, 802, 878, 943, 971
Hpy8I	GTNNAC	2 cut(s)	27, 1022
HpyAV	CCTTC	9 cut(s)	188, 309, 589, 618, 710, 734, 739, 767, 971
HpyCH4III	ACNGT	3 cut(s)	560, 963, 1019
HpyCH4V	TGCA	6 cut(s)	27, 160, 220, 350, 673, 1041
HpyF3I	CTNAG	4 cut(s)	185, 227, 374, 1004
Hsp92II	CATG	3 cut(s)	132, 673, 1041
HspAI	GCGC	3 cut(s)	71, 73, 1066
Kpn2I	TCCGGA	2 cut(s)	801, 877
Kzo9I	GATC	4 cut(s)	630, 702, 798, 880
LguI	GCTCTTC	1 cut(s)	451
LmnI	GCTCC	3 cut(s)	121, 1073, 1123
LweI	GCATC	2 cut(s)	229, 386
MabI	ACCWGGT	1 cut(s)	1045
MaeI	CTAG	4 cut(s)	269, 288, 734, 1028
MaeIII	GTNAC	5 cut(s)	85, 171, 197, 1013, 1033
MalI	GATC	4 cut(s)	632, 704, 800, 882
MboI	GATC	4 cut(s)	630, 702, 798, 880
MboII	GAAGA	7 cut(s)	8, 438, 444, 530, 749, 808, 881
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	3 cut(s)	702, 798, 880
MhlI	GDGCHC	2 cut(s)	29, 446
MlsI	TGGCCA	1 cut(s)	262
MluCI	AATT	6 cut(s)	110, 215, 403, 613, 647, 1110
MluNI	TGGCCA	1 cut(s)	262
MlyI	GAGTC	3 cut(s)	7, 491, 927
MmeI	TCCRAC	2 cut(s)	35, 85
Mox20I	TGGCCA	1 cut(s)	262
MroI	TCCGGA	2 cut(s)	801, 877
MroXI	GAANNNNTTC	2 cut(s)	607, 873
MscI	TGGCCA	1 cut(s)	262
MseI	TTAA	7 cut(s)	113, 306, 698, 768, 857, 863, 927
Msp20I	TGGCCA	1 cut(s)	262
MspI	CCGG	2 cut(s)	802, 878
MspR9I	CCNGG	2 cut(s)	118, 1047
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	2 cut(s)	118, 1047
MvnI	CGCG	2 cut(s)	73, 75
NdeI	CATATG	2 cut(s)	506, 1091
NdeII	GATC	4 cut(s)	630, 702, 798, 880
NlaIII	CATG	3 cut(s)	132, 673, 1041
NlaIV	GGNNCC	2 cut(s)	596, 704
NmuCI	GTSAC	4 cut(s)	85, 171, 1013, 1033
NspI	RCATGY	3 cut(s)	132, 673, 1041
PaeI	GCATGC	1 cut(s)	673
PauI	GCGCGC	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	656
PciI	ACATGT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	451
PdmI	GAANNNNTTC	2 cut(s)	607, 873
PfeI	GAWTC	5 cut(s)	80, 319, 332, 469, 778
PleI	GAGTC	3 cut(s)	7, 490, 927
PpsI	GAGTC	3 cut(s)	7, 490, 927
PscI	ACATGT	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	116, 1045
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	2 cut(s)	116, 1045
PspN4I	GGNNCC	2 cut(s)	596, 704
PsuI	RGATCY	3 cut(s)	702, 798, 880
PteI	GCGCGC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	451
SaqAI	TTAA	7 cut(s)	113, 306, 698, 768, 857, 863, 927
Sau3AI	GATC	4 cut(s)	630, 702, 798, 880
SchI	GAGTC	3 cut(s)	7, 491, 927
ScrFI	CCNGG	2 cut(s)	118, 1047
SduI	GDGCHC	2 cut(s)	29, 446
SexAI	ACCWGGT	1 cut(s)	1045
SfaNI	GCATC	2 cut(s)	229, 386
SmlI	CTYRAG	4 cut(s)	20, 689, 782, 884
SmoI	CTYRAG	4 cut(s)	20, 689, 782, 884
SphI	GCATGC	1 cut(s)	673
Sse9I	AATT	6 cut(s)	110, 215, 403, 613, 647, 1110
SseBI	AGGCCT	1 cut(s)	656
SsiI	CCGC	2 cut(s)	44, 365
SspMI	CTAG	4 cut(s)	269, 288, 734, 1028
StuI	AGGCCT	1 cut(s)	656
StyD4I	CCNGG	2 cut(s)	116, 1045
TaaI	ACNGT	3 cut(s)	560, 963, 1019
TaqI	TCGA	3 cut(s)	322, 492, 867
TasI	AATT	6 cut(s)	110, 215, 403, 613, 647, 1110
TfiI	GAWTC	5 cut(s)	80, 319, 332, 469, 778
Tru1I	TTAA	7 cut(s)	113, 306, 698, 768, 857, 863, 927
Tru9I	TTAA	7 cut(s)	113, 306, 698, 768, 857, 863, 927
TscAI	CASTG	4 cut(s)	72, 999, 1022, 1029
TseFI	GTSAC	4 cut(s)	85, 171, 1013, 1033
Tsp45I	GTSAC	4 cut(s)	85, 171, 1013, 1033
TspDTI	ATGAA	3 cut(s)	123, 438, 990
TspGWI	ACGGA	3 cut(s)	73, 1001, 1110
TspRI	CASTG	4 cut(s)	72, 999, 1022, 1029
VneI	GTGCAC	1 cut(s)	25
XapI	RAATTY	2 cut(s)	403, 1110
XceI	RCATGY	3 cut(s)	132, 673, 1041
XcmI	CCANNNNNNNNNTGG	1 cut(s)	831
XmnI	GAANNNNTTC	2 cut(s)	607, 873
XspI	CTAG	4 cut(s)	269, 288, 734, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.