MD03G1042200.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0001766
Physical Location & Seq
Reverse (-)
3322289 .. 3323228
940 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1042200.v1.1.491

Sequence Viewer

Length: 273 bp
ATGGAGATGCTGCTCCCCAAATCTCTCACTGAGCTGACAATTTCTGGCTTCCCAAATCTGAAGAAATTCAGCAAGAGCATTCACTTCCTCACCTCTCTTCAGACTCTGAAGCTCTTTGCTTGCCCAAAGCTGGCATCCATTCCAGAGGAGGGCCTGCCTCTTTCACTTGCGCAATTTACGATGGACAAGTGTCCTCTACTAGAAGAGAGATGTCAACCTGGAAAAGGACGATATTGGCCCAAAATATCCCACATTCCTTGCCTGAACGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

91

Amino Acids

10.15

Weight (kDa)

9.02

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 3 cut(s) 80, 83, 128
AfiI CCNNNNNNNGG 3 cut(s) 130, 149, 224
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 3 cut(s) 34, 112, 130
AluI AGCT 3 cut(s) 34, 112, 130
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 2 cut(s) 151, 236
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 151, 237
AsuHPI GGTGA 1 cut(s) 82
BccI CCATC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 219
BfaI CTAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 151, 237
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 143
BoxI GACNNNNGTC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 149, 224
BseBI CCWGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 130, 149, 224
BseMII CTCAG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 161
BshFI GGCC 2 cut(s) 153, 238
BslI CCNNNNNNNGG 3 cut(s) 130, 149, 224
BsmI GAATGC 1 cut(s) 78
BsnI GGCC 2 cut(s) 153, 238
BspANI GGCC 2 cut(s) 153, 238
BspCNI CTCAG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 219
Bst6I CTCTTC 2 cut(s) 102, 198
BstC8I GCNNGC 3 cut(s) 121, 132, 155
BstDEI CTNAG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 134
BstHHI GCGC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 219
BstPAI GACNNNNGTC 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 217
BsuRI GGCC 2 cut(s) 153, 238
BtsCI GGATG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 3 cut(s) 121, 132, 155
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 151, 237
CspCI CAANNNNNGTGG 1 cut(s) 239
CviJI RGCY 6 cut(s) 34, 48, 112, 130, 153, 238
CviKI_1 RGCY 6 cut(s) 34, 48, 112, 130, 153, 238
DdeI CTNAG 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 102, 198
EarI CTCTTC 2 cut(s) 102, 198
Eco57I CTGAAG 3 cut(s) 80, 83, 128
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 217
FaiI YATR 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 1 cut(s) 200
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 11
HaeIII GGCC 2 cut(s) 153, 238
HhaI GCGC 1 cut(s) 172
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 1 cut(s) 103
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 60, 102, 108
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 267
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 267
HspAI GCGC 1 cut(s) 170
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 6 cut(s) 30, 116, 156, 167, 204, 231
LweI GCATC 1 cut(s) 143
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 267
MboII GAAGA 3 cut(s) 73, 89, 215
MluCI AATT 3 cut(s) 39, 65, 173
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 6 cut(s) 98, 103, 139, 142, 168, 204
MroXI GAANNNNTTC 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 1 cut(s) 219
NsbI TGCGCA 1 cut(s) 171
PctI GAATGC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 12
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PshAI GACNNNNGTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspPI GGNCC 2 cut(s) 151, 237
PstNI CAGNNNCTG 1 cut(s) 106
SatI GCNGC 1 cut(s) 11
Sau96I GGNCC 2 cut(s) 151, 237
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 219
SetI ASST 6 cut(s) 36, 95, 114, 132, 220, 270
SfaNI GCATC 1 cut(s) 143
Sse9I AATT 3 cut(s) 39, 65, 173
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 270
TasI AATT 3 cut(s) 39, 65, 173
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 10
TspRI CASTG 1 cut(s) 34
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.