Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004180.1

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

163762 .. 164799

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004180.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgtcacttcgtcatttgagtattgaaggtaactcacatcttgttcaattgcatcacctcagattactacaagagcttcacattgataagtggccaagcctagtttcttttccattggctagtttgccaccttctcttaaagatataaagattcgaggttgcgattctcttacttattttgcaagatatcagataccgccaagtctaaggagaatagagataaatagatgccaaaatttgaaatcattggcggaggatgaggaggcgatagggggttcttcatcttcttctccttgttttattcaggatgaggagtcctgtctcgagtatttgagcatatggaactgtccatctttgatatctctatcatccagagtcaagctacccagggcgcttaaacacctccagatacaaacttgcagacaattggagtcaatagctgatgcattacatgataacatttctctcgagtacattcacatctggtattgctcaaatctccaatatttaccagaaggtctttaccacctcttcaatcttcagaagatgagtatttacggttgtagaagtcttgtttccttcccgacaggagggttcccaagaagtccttccaacttgagagagtttgagatcaccagttgtgagaaattggaggccttacccaaaggcatgcacaacctcaactctcttgagatattaaggatcccctattatgaaggtttcacttccttcctagaagaagggttgcctcctaaccttcagtctcttaaagttctgaatctcaagagttgtaaaccactcttcaaatgcggcttgcacagactcacatctcttagagagttgtggatcagtggtgaagatccggaactggtttcctttccacccaagaaagagatggtgcttcccaaatctctcattaagctcataatcgaagactttccggatctcaagtatctacccagcaaagggtttcagtccctcacatctcttaaaagactatatatggagttgccccaagctactgtccattccagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

345

Amino Acids

39.51

Weight (kDa)

7.97

Isoelectric Point (pI)

70.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	862, 940
AciI	CCGC	3 cut(s)	197, 251, 810
AclWI	GGATC	5 cut(s)	697, 710, 854, 854, 951
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	2 cut(s)	524, 743
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	590, 965, 966
AgsI	TTSAA	5 cut(s)	26, 47, 241, 535, 805
AjnI	CCWGG	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	4 cut(s)	88, 120, 592, 624
AluBI	AGCT	5 cut(s)	76, 382, 440, 922, 1019
AluI	AGCT	5 cut(s)	76, 382, 440, 922, 1019
Alw26I	GTCTC	2 cut(s)	326, 768
AlwI	GGATC	5 cut(s)	697, 710, 854, 854, 951
Ama87I	CYCGRG	2 cut(s)	323, 467
Aor13HI	TCCGGA	2 cut(s)	862, 940
AoxI	GGCC	2 cut(s)	92, 654
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	2 cut(s)	607, 936
AspLEI	GCGC	1 cut(s)	394
AsuHPI	GGTGA	3 cut(s)	47, 625, 866
AvaI	CYCGRG	2 cut(s)	323, 467
BalI	TGGCCA	1 cut(s)	94
BamHI	GGATCC	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	939
BccI	CCATC	2 cut(s)	358, 889
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	326, 768
BfaI	CTAG	3 cut(s)	101, 120, 734
BfoI	RGCGCY	1 cut(s)	395
BisI	GCNGC	1 cut(s)	811
BlsI	GCNGC	1 cut(s)	812
Bme1390I	CCNGG	1 cut(s)	388
BmeT110I	CYCGRG	2 cut(s)	323, 467
BmiI	GGNNCC	2 cut(s)	596, 704
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	3 cut(s)	61, 218, 433
BpiI	GAAGAC	1 cut(s)	939
BpmI	CTGGAG	1 cut(s)	389
BpuEI	CTTGAG	4 cut(s)	637, 710, 767, 932
BsaJI	CCNNGG	2 cut(s)	386, 387
BsaWI	WCCGGW	2 cut(s)	862, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	590, 965, 966
Bse1I	ACTGG	2 cut(s)	636, 873
BseAI	TCCGGA	2 cut(s)	862, 940
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	386, 387
BseGI	GGATG	3 cut(s)	262, 313, 368
BseLI	CCNNNNNNNGG	3 cut(s)	590, 965, 966
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	636, 873
BseRI	GAGGAG	2 cut(s)	275, 326
BseYI	CCCAGC	1 cut(s)	959
BshFI	GGCC	2 cut(s)	94, 656
BsiHKCI	CYCGRG	2 cut(s)	323, 467
BsiSI	CCGG	2 cut(s)	863, 941
BslFI	GGGAC	1 cut(s)	961
BslI	CCNNNNNNNGG	3 cut(s)	590, 965, 966
BsmAI	GTCTC	2 cut(s)	326, 768
BsmFI	GGGAC	1 cut(s)	961
BsnI	GGCC	2 cut(s)	94, 656
BsoBI	CYCGRG	2 cut(s)	323, 467
Bsp13I	TCCGGA	2 cut(s)	862, 940
Bsp143I	GATC	5 cut(s)	630, 702, 846, 859, 943
BspACI	CCGC	3 cut(s)	197, 251, 810
BspANI	GGCC	2 cut(s)	94, 656
BspCNI	CTCAG	1 cut(s)	72
BspEI	TCCGGA	2 cut(s)	862, 940
BspLI	GGNNCC	2 cut(s)	596, 704
BspPI	GGATC	5 cut(s)	697, 710, 854, 854, 951
BsrI	ACTGG	2 cut(s)	636, 873
BssECI	CCNNGG	2 cut(s)	386, 387
BssMI	GATC	5 cut(s)	630, 702, 846, 859, 943
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	3 cut(s)	347, 560, 1024
Bst6I	CTCTTC	2 cut(s)	536, 806
BstC8I	GCNNGC	2 cut(s)	671, 815
BstDEI	CTNAG	3 cut(s)	59, 206, 833
BstF5I	GGATG	3 cut(s)	262, 313, 368
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	5 cut(s)	633, 705, 849, 862, 946
BstMAI	GTCTC	2 cut(s)	326, 768
BstMBI	GATC	5 cut(s)	630, 702, 846, 859, 943
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	3 cut(s)	702, 859, 943
BstYI	RGATCY	3 cut(s)	702, 859, 943
BsuRI	GGCC	2 cut(s)	94, 656
BtsCI	GGATG	3 cut(s)	262, 313, 368
BtsIMutI	CAGTG	1 cut(s)	856
Cac8I	GCNNGC	2 cut(s)	671, 815
CfoI	GCGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	2 cut(s)	452, 670
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	3 cut(s)	59, 206, 833
DpnI	GATC	5 cut(s)	632, 704, 848, 861, 945
DpnII	GATC	5 cut(s)	630, 702, 846, 859, 943
EaeI	YGGCCR	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	536, 806
EarI	CTCTTC	2 cut(s)	536, 806
EciI	GGCGGA	1 cut(s)	266
Eco147I	AGGCCT	1 cut(s)	656
Eco32I	GATATC	2 cut(s)	188, 360
Eco57I	CTGAAG	2 cut(s)	524, 743
Eco88I	CYCGRG	2 cut(s)	323, 467
EcoRII	CCWGG	1 cut(s)	386
EcoRV	GATATC	2 cut(s)	188, 360
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	2 cut(s)	455, 673
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FaqI	GGGAC	1 cut(s)	961
FatI	CATG	2 cut(s)	451, 669
FauNDI	CATATG	1 cut(s)	338
Fnu4HI	GCNGC	1 cut(s)	811
FokI	GGATG	3 cut(s)	269, 320, 355
Fsp4HI	GCNGC	1 cut(s)	811
FspBI	CTAG	3 cut(s)	101, 120, 734
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	811
GsaI	CCCAGC	1 cut(s)	963
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	94, 656
HapII	CCGG	2 cut(s)	863, 941
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	2 cut(s)	455, 673
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HinfI	GANTC	7 cut(s)	151, 164, 314, 375, 431, 778, 822
HpaII	CCGG	2 cut(s)	863, 941
HphI	GGTGA	3 cut(s)	47, 625, 866
Hpy166II	GTNNAC	1 cut(s)	794
Hpy188I	TCNGA	4 cut(s)	62, 192, 543, 777
Hpy8I	GTNNAC	1 cut(s)	794
HpyAV	CCTTC	9 cut(s)	20, 141, 509, 589, 618, 710, 734, 739, 767
HpyCH4III	ACNGT	3 cut(s)	347, 560, 1024
HpyCH4V	TGCA	6 cut(s)	52, 182, 420, 446, 673, 817
HpyF3I	CTNAG	3 cut(s)	59, 206, 833
Hsp92II	CATG	2 cut(s)	455, 673
HspAI	GCGC	1 cut(s)	392
Kpn2I	TCCGGA	2 cut(s)	862, 940
Kzo9I	GATC	5 cut(s)	630, 702, 846, 859, 943
LweI	GCATC	3 cut(s)	61, 218, 433
MaeI	CTAG	3 cut(s)	101, 120, 734
MaeIII	GTNAC	2 cut(s)	3, 29
MalI	GATC	5 cut(s)	632, 704, 848, 861, 945
MboI	GATC	5 cut(s)	630, 702, 846, 859, 943
MfeI	CAATTG	2 cut(s)	47, 425
MflI	RGATCY	3 cut(s)	702, 859, 943
MlsI	TGGCCA	1 cut(s)	94
MluCI	AATT	4 cut(s)	47, 235, 425, 647
MluNI	TGGCCA	1 cut(s)	94
MlyI	GAGTC	4 cut(s)	323, 384, 440, 816
MmeI	TCCRAC	1 cut(s)	636
Mox20I	TGGCCA	1 cut(s)	94
Mph1103I	ATGCAT	1 cut(s)	448
MroI	TCCGGA	2 cut(s)	862, 940
MroXI	GAANNNNTTC	2 cut(s)	607, 936
MscI	TGGCCA	1 cut(s)	94
MseI	TTAA	6 cut(s)	138, 396, 698, 768, 918, 990
Msp20I	TGGCCA	1 cut(s)	94
MspI	CCGG	2 cut(s)	863, 941
MspR9I	CCNGG	1 cut(s)	388
MunI	CAATTG	2 cut(s)	47, 425
MvaI	CCWGG	1 cut(s)	388
NdeI	CATATG	1 cut(s)	338
NdeII	GATC	5 cut(s)	630, 702, 846, 859, 943
NlaIII	CATG	2 cut(s)	455, 673
NlaIV	GGNNCC	2 cut(s)	596, 704
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	673
PaeI	GCATGC	1 cut(s)	673
PaeR7I	CTCGAG	2 cut(s)	323, 467
PasI	CCCWGGG	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	656
PdmI	GAANNNNTTC	2 cut(s)	607, 936
PfeI	GAWTC	3 cut(s)	151, 164, 778
PkrI	GCNGC	1 cut(s)	812
PleI	GAGTC	4 cut(s)	322, 383, 439, 816
PpsI	GAGTC	4 cut(s)	322, 383, 439, 816
Psp6I	CCWGG	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	959
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	596, 704
PsuI	RGATCY	3 cut(s)	702, 859, 943
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SaqAI	TTAA	6 cut(s)	138, 396, 698, 768, 918, 990
SatI	GCNGC	1 cut(s)	811
Sau3AI	GATC	5 cut(s)	630, 702, 846, 859, 943
SchI	GAGTC	4 cut(s)	323, 384, 440, 816
ScrFI	CCNGG	1 cut(s)	388
SfaNI	GCATC	3 cut(s)	61, 218, 433
Sfr274I	CTCGAG	2 cut(s)	323, 467
SlaI	CTCGAG	2 cut(s)	323, 467
SmlI	CTYRAG	6 cut(s)	323, 467, 616, 689, 782, 947
SmoI	CTYRAG	6 cut(s)	323, 467, 616, 689, 782, 947
SphI	GCATGC	1 cut(s)	673
Sse9I	AATT	4 cut(s)	47, 235, 425, 647
SseBI	AGGCCT	1 cut(s)	656
SsiI	CCGC	3 cut(s)	197, 251, 810
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	3 cut(s)	101, 120, 734
StuI	AGGCCT	1 cut(s)	656
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	347, 560, 1024
TaqI	TCGA	4 cut(s)	154, 324, 468, 930
TasI	AATT	4 cut(s)	47, 235, 425, 647
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	813
TfiI	GAWTC	3 cut(s)	151, 164, 778
Tru1I	TTAA	6 cut(s)	138, 396, 698, 768, 918, 990
Tru9I	TTAA	6 cut(s)	138, 396, 698, 768, 918, 990
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	270, 729
TspRI	CASTG	1 cut(s)	856
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XhoI	CTCGAG	2 cut(s)	323, 467
XmnI	GAANNNNTTC	2 cut(s)	607, 936
XspI	CTAG	3 cut(s)	101, 120, 734
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.