Rroxscaffold_4G00327800

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
60647411 .. 60651482
4072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327800.1

Sequence Viewer

Length: 435 bp
ATGGTAGCGGAGGTCTTCCTCGTTGTAGGCCACTCCTGGAAGCTCAAGGATTGCACAGACTCACTTCTCTTAGAGCGTTGGATATCAGGGGGAAATGATTCACAACTAGTGTCATTTCCACCTGACAAGGAGATGGTGCTCCCCAAATCTCTCATTCTACTTCATATTGCAGGGTTCCCGAATCTGAGGCACCTATCCAGCAAGGGCTTTCAGTTCCTCCCCTCTCTTGAATCTCTTCAAGTCTTCAGCTGTCCAAAGCTAGCATCCATTCCTGAGGAGGGACTCCCTCTTTCACTTACACAACTTCATATCTTTGGTTGTCCACTGCTAGTAAAGAACTGCAGACCTGGAAAAGGACAATACTGGCACTCCATAGCTCGCATCCCTTTCATATGGATTAAGGGTGATAAGGGAGCAGACATATTTAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.1

Weight (kDa)

8.75

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 189
AciI CCGC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 278, 353
AgsI TTSAA 2 cut(s) 230, 239
AhlI ACTAGT 1 cut(s) 106
AjnI CCWGG 2 cut(s) 35, 346
AluBI AGCT 5 cut(s) 43, 249, 259, 377, 432
AluI AGCT 5 cut(s) 43, 249, 259, 377, 432
Alw21I GWGCWC 1 cut(s) 141
AoxI GGCC 1 cut(s) 28
Asp700I GAANNNNTTC 2 cut(s) 97, 234
AsuHPI GGTGA 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 273
BanI GGYRCC 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 7, 235
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 1 cut(s) 127
BciT130I CCWGG 2 cut(s) 37, 348
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 3 cut(s) 107, 260, 329
BfmI CTRYAG 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 37, 348
BmiI GGNNCC 2 cut(s) 176, 191
BmrFI CCNGG 2 cut(s) 37, 348
BmsI GCATC 2 cut(s) 272, 390
BmtI GCTAGC 1 cut(s) 263
BpiI GAAGAC 2 cut(s) 7, 235
BpuEI CTTGAG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 353
Bse1I ACTGG 1 cut(s) 368
Bse21I CCTNAGG 1 cut(s) 273
BseBI CCWGG 2 cut(s) 37, 348
BseGI GGATG 2 cut(s) 263, 381
BseLI CCNNNNNNNGG 2 cut(s) 278, 353
BseMII CTCAG 2 cut(s) 176, 264
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 290
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 141
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 278, 353
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 141
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 177, 265
BspLI GGNNCC 2 cut(s) 176, 191
BspMAI CTGCAG 1 cut(s) 344
BspOI GCTAGC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 37, 348
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 261, 379
BstDEI CTNAG 3 cut(s) 70, 185, 273
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 263, 381
BstNI CCWGG 2 cut(s) 37, 348
BstSCI CCNGG 2 cut(s) 35, 346
BstSFI CTRYAG 1 cut(s) 340
BstV2I GAAGAC 2 cut(s) 7, 235
Bsu36I CCTNAGG 1 cut(s) 273
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 2 cut(s) 263, 381
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 2 cut(s) 261, 379
CviJI RGCY 7 cut(s) 30, 43, 207, 249, 259, 377, 432
CviKI_1 RGCY 7 cut(s) 30, 43, 207, 249, 259, 377, 432
DdeI CTNAG 3 cut(s) 70, 185, 273
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco32I GATATC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 229
Eco81I CCTNAGG 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoRII CCWGG 2 cut(s) 35, 346
EcoRV GATATC 1 cut(s) 84
FaiI YATR 6 cut(s) 165, 309, 374, 392, 394, 422
FaqI GGGAC 1 cut(s) 294
FauNDI CATATG 1 cut(s) 392
FokI GGATG 2 cut(s) 250, 368
FspBI CTAG 3 cut(s) 107, 260, 329
HaeIII GGCC 1 cut(s) 30
HinfI GANTC 5 cut(s) 59, 98, 181, 230, 282
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 3 cut(s) 178, 227, 272
Hpy8I GTNNAC 1 cut(s) 323
HpyCH4V TGCA 3 cut(s) 54, 170, 342
HpyF3I CTNAG 3 cut(s) 70, 185, 273
LmnI GCTCC 2 cut(s) 144, 413
LweI GCATC 2 cut(s) 272, 390
MaeI CTAG 3 cut(s) 107, 260, 329
MboII GAAGA 3 cut(s) 7, 227, 235
MhlI GDGCHC 1 cut(s) 141
MlyI GAGTC 2 cut(s) 53, 276
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 8 cut(s) 4, 29, 180, 227, 232, 268, 271, 297
MroXI GAANNNNTTC 2 cut(s) 97, 234
MseI TTAA 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 37, 348
MvaI CCWGG 2 cut(s) 37, 348
NdeI CATATG 1 cut(s) 392
NheI GCTAGC 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 176, 191
PdmI GAANNNNTTC 2 cut(s) 97, 234
PfeI GAWTC 3 cut(s) 98, 181, 230
PfoI TCCNGGA 1 cut(s) 35
PleI GAGTC 2 cut(s) 53, 276
PpsI GAGTC 2 cut(s) 53, 276
Psp6I CCWGG 2 cut(s) 35, 346
PspGI CCWGG 2 cut(s) 35, 346
PspN4I GGNNCC 2 cut(s) 176, 191
PstI CTGCAG 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 399
SchI GAGTC 2 cut(s) 53, 276
ScrFI CCNGG 2 cut(s) 37, 348
SduI GDGCHC 1 cut(s) 141
SetI ASST 9 cut(s) 15, 45, 124, 195, 251, 261, 349, 379, 434
SfaNI GCATC 2 cut(s) 272, 390
SfcI CTRYAG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SpeI ACTAGT 1 cut(s) 106
SsiI CCGC 1 cut(s) 8
SspMI CTAG 3 cut(s) 107, 260, 329
StyD4I CCNGG 2 cut(s) 35, 346
TfiI GAWTC 3 cut(s) 98, 181, 230
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 330
TspDTI ATGAA 3 cut(s) 152, 296, 379
TspRI CASTG 1 cut(s) 330
XagI CCTNNNNNAGG 1 cut(s) 351
XmnI GAANNNNTTC 2 cut(s) 97, 234
XspI CTAG 3 cut(s) 107, 260, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.