Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8013808.1

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

21 .. 535

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8013808.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

ttcagactttggtgttgagatactgtggaggtttggcatccattatagaagagggtttcccacccaacctaattaatcttcgtattggcaatcgcaaaagctgcaagcctctctcagagtgggggcttcaccacttggacagactcacctctcttaaaggcttgtggatccatggtgtagatccagatctggtgtcctttccgccaaaggaggtgctgttcccaaaatctctcattcaactcgacattggagagttcccaaatctgaagcgcctgtcatcatcttttcaatcactctcctctcttgaatcccttaacatttgggattgcccaaagctagcatctattattccagaaaaagaggatcatctgcctctttcacttacacagcttcgcatctatcatgactgtccgctgctcacaaagaaataccaaccaggtaaagaaatagcccgcatcccttacgtttattttggagactgggaggacgaagccaaagccgaccgcgggctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

170

Amino Acids

19.32

Weight (kDa)

6.57

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	506
AciI	CCGC	5 cut(s)	202, 412, 453, 504, 506
AclWI	GGATC	4 cut(s)	162, 175, 175, 371
AcuI	CTGAAG	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	3 cut(s)	238, 289, 307
AjnI	CCWGG	1 cut(s)	435
AloI	GAACNNNNNNTCC	2 cut(s)	202, 234
AluBI	AGCT	3 cut(s)	101, 336, 390
AluI	AGCT	3 cut(s)	101, 336, 390
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	4 cut(s)	162, 175, 175, 371
ApeKI	GCWGC	2 cut(s)	101, 414
AseI	ATTAAT	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	121, 138
AsuNHI	GCTAGC	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	88, 401
BciT130I	CCWGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	273
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	102, 415
BlsI	GCNGC	2 cut(s)	103, 416
Bme1390I	CCNGG	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	437
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	4 cut(s)	46, 349, 404, 464
BmtI	GCTAGC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	171, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	484
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	2 cut(s)	171, 504
BseGI	GGATG	2 cut(s)	37, 455
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	88, 401
Bsh1236I	CGCG	1 cut(s)	506
Bsh1285I	CGRYCG	1 cut(s)	504
BsiEI	CGRYCG	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	470
Bsp143I	GATC	4 cut(s)	167, 180, 186, 363
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	5 cut(s)	202, 412, 453, 504, 506
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	506
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	340
BspPI	GGATC	4 cut(s)	162, 175, 175, 371
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	171, 504
BssMI	GATC	4 cut(s)	167, 180, 186, 363
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	2 cut(s)	25, 409
Bst6I	CTCTTC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	4 cut(s)	106, 338, 453, 508
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	2 cut(s)	171, 504
BstF5I	GGATG	2 cut(s)	37, 455
BstFNI	CGCG	1 cut(s)	506
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	4 cut(s)	170, 183, 189, 366
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	4 cut(s)	167, 180, 186, 363
BstMCI	CGRYCG	1 cut(s)	504
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	435
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	2 cut(s)	88, 401
BstX2I	RGATCY	3 cut(s)	167, 180, 186
BstYI	RGATCY	3 cut(s)	167, 180, 186
BtgI	CCRYGG	2 cut(s)	171, 504
BtsCI	GGATG	2 cut(s)	37, 455
Cac8I	GCNNGC	4 cut(s)	106, 338, 453, 508
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	1 cut(s)	272
Cfr42I	CCGCGG	1 cut(s)	507
CsiI	ACCWGGT	1 cut(s)	435
CviAII	CATG	2 cut(s)	172, 403
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	4 cut(s)	169, 182, 188, 365
DpnII	GATC	4 cut(s)	167, 180, 186, 363
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	2 cut(s)	175, 406
FaiI	YATR	3 cut(s)	46, 173, 404
FatI	CATG	2 cut(s)	171, 402
FauI	CCCGC	2 cut(s)	460, 499
Fnu4HI	GCNGC	2 cut(s)	102, 415
FokI	GGATG	2 cut(s)	24, 442
Fsp4HI	GCNGC	2 cut(s)	102, 415
FspBI	CTAG	1 cut(s)	337
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	2 cut(s)	102, 415
HaeII	RGCGCY	1 cut(s)	273
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	175, 406
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	143, 307
HphI	GGTGA	2 cut(s)	121, 138
Hpy188I	TCNGA	3 cut(s)	5, 117, 266
Hpy188III	TCNNGA	4 cut(s)	184, 304, 352, 403
HpyCH4III	ACNGT	2 cut(s)	25, 409
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	2 cut(s)	175, 406
HspAI	GCGC	1 cut(s)	270
KspI	CCGCGG	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	167, 180, 186, 363
LpnPI	CCDG	7 cut(s)	175, 197, 286, 365, 422, 449, 465
Lsp1109I	GCAGC	2 cut(s)	88, 401
LweI	GCATC	4 cut(s)	46, 349, 404, 464
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	1 cut(s)	337
MaeII	ACGT	1 cut(s)	464
MalI	GATC	4 cut(s)	169, 182, 188, 365
MboI	GATC	4 cut(s)	167, 180, 186, 363
MboII	GAAGA	2 cut(s)	61, 70
MflI	RGATCY	3 cut(s)	167, 180, 186
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	9 cut(s)	22, 45, 119, 159, 204, 309, 354, 383, 477
MseI	TTAA	3 cut(s)	74, 155, 314
MspA1I	CMGCKG	2 cut(s)	414, 506
MspR9I	CCNGG	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	4 cut(s)	167, 180, 186, 363
NheI	GCTAGC	1 cut(s)	336
NlaIII	CATG	2 cut(s)	175, 406
NlaIV	GGNNCC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	103, 416
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PshBI	ATTAAT	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	3 cut(s)	167, 180, 186
SacII	CCGCGG	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	74, 155, 314
SatI	GCNGC	2 cut(s)	102, 415
Sau3AI	GATC	4 cut(s)	167, 180, 186, 363
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	437
SetI	ASST	9 cut(s)	33, 71, 103, 151, 215, 338, 392, 441, 467
SexAI	ACCWGGT	1 cut(s)	435
SfaNI	GCATC	4 cut(s)	46, 349, 404, 464
Sfr303I	CCGCGG	1 cut(s)	507
SgrBI	CCGCGG	1 cut(s)	507
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	5 cut(s)	202, 412, 453, 504, 506
SspMI	CTAG	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	25, 409
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	1 cut(s)	242
TasI	AATT	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	3 cut(s)	74, 155, 314
Tru9I	TTAA	3 cut(s)	74, 155, 314
TseI	GCWGC	2 cut(s)	101, 414
VspI	ATTAAT	1 cut(s)	74
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.