Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

941298 .. 942248

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG008000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCCAAAATTGGTGGAGGATGAGGAGGCGATAGGGGGTTCTTCATCTTCTTCTCCTTGTTTGATTCAGGATGAGGAGTCCTCTCTCGAGTATTTGAGCATATGGAACTGTCCATCTTTGATATCTCTATCATCCAGAGTCAAGCTACCCAGGGCGCTTAAACACCTCCAGATACATACTTGCAGACAACTGGAGTCAATAGCTGATGCATTACATGATAACATTTCTCTCGAGTACATTCACATCTGGTATTGCTCTAATCTCCAATATTTTCCAGAAGGTATTTACTACCTCTCCAATCTTCAGAAGTTGAGTATTTACGGTTGTAGAAGTCTTGTTTCCTTCCCGACAGGAGGGTTCCCAAGAAGTCCTTCCAACTTGAGAGAGTTTGAGATCACCAGTTGTGAGAAATTGGAGGCCTTACCCAAAGGCATGCACAACCTCAACTCTCTTGAGATATTAAGGATCCCCTATTATGAAGGTTTCACTTCCTTCCTAGAAGAAAGGTTGCCTCCTAACCTTCAGTCTCTTAAAGTTCTGAATCTCAAGAGTTGTAAACCACTCTTCGAATGCGGCTTGCACAGACTCACATCTCTTAGAGAGTTGTGGATCAGTGGTGAAGATCCGGAACTGGTTTCCTTTCCACCCAAGAAAGAGATGGTGCTTCCCAAATCTCTCATTAAGCTCATAATCGAAGACTTTCTGGATCTCAAGTATCTACCCAGCAAAGGGTTTCAGTCCCTCACATCTCTTAAAAGACTCTATATTTGGAGTTGCCCCAAGCTACTGTCCATTCCAGATGAGGGCAGGCTTCTTTCACTGACACAACTTAGTATCCGTCACTGTCCACTGCTAGAAGTGAGATGCAAACCAGGTAAAGGTCAGTATTGGCGCTCCATAGCCCACATTCCTTACATATGGTTGGGAGACAAGAGAATTCAAGCTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

316

Amino Acids

36.21

Weight (kDa)

7.95

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	27 - 136	1.4e-06	Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14	PF23598	51 - 256	2.1e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	625
AciI	CCGC	1 cut(s)	573
AclWI	GGATC	5 cut(s)	460, 473, 617, 617, 714
AcsI	RAATTY	1 cut(s)	936
AcuI	CTGAAG	2 cut(s)	287, 506
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	5 cut(s)	353, 728, 729, 803, 878
AgsI	TTSAA	1 cut(s)	941
AjnI	CCWGG	2 cut(s)	149, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
AluBI	AGCT	5 cut(s)	145, 203, 685, 784, 944
AluI	AGCT	5 cut(s)	145, 203, 685, 784, 944
Alw26I	GTCTC	2 cut(s)	531, 921
AlwI	GGATC	5 cut(s)	460, 473, 617, 617, 714
Ama87I	CYCGRG	2 cut(s)	86, 230
Aor13HI	TCCGGA	1 cut(s)	625
AoxI	GGCC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	936
ArsI	GACNNNNNNTTYG	2 cut(s)	750, 782
Asp700I	GAANNNNTTC	2 cut(s)	370, 699
AspLEI	GCGC	2 cut(s)	157, 894
AsuHPI	GGTGA	2 cut(s)	388, 629
AsuII	TTCGAA	1 cut(s)	567
AvaI	CYCGRG	2 cut(s)	86, 230
BamHI	GGATCC	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	702
BccI	CCATC	2 cut(s)	121, 652
BciT130I	CCWGG	2 cut(s)	151, 873
BciVI	GTATCC	1 cut(s)	845
BcoDI	GTCTC	2 cut(s)	531, 921
BfaI	CTAG	2 cut(s)	497, 854
BfoI	RGCGCY	2 cut(s)	158, 895
BfuI	GTATCC	1 cut(s)	845
BisI	GCNGC	1 cut(s)	574
BlsI	GCNGC	1 cut(s)	575
Bme1390I	CCNGG	2 cut(s)	151, 873
BmeT110I	CYCGRG	2 cut(s)	86, 230
BmiI	GGNNCC	2 cut(s)	359, 467
BmrFI	CCNGG	2 cut(s)	151, 873
BmsI	GCATC	2 cut(s)	196, 854
BpiI	GAAGAC	1 cut(s)	702
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	2 cut(s)	152, 212
Bpu14I	TTCGAA	1 cut(s)	567
BpuEI	CTTGAG	4 cut(s)	400, 473, 530, 695
BsaJI	CCNNGG	2 cut(s)	149, 150
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	353, 728, 729, 803, 878
Bse1I	ACTGG	3 cut(s)	195, 399, 636
BseAI	TCCGGA	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	151, 873
BseDI	CCNNGG	2 cut(s)	149, 150
BseGI	GGATG	3 cut(s)	25, 76, 131
BseLI	CCNNNNNNNGG	5 cut(s)	353, 728, 729, 803, 878
BseNI	ACTGG	3 cut(s)	195, 399, 636
BseRI	GAGGAG	2 cut(s)	38, 89
BseYI	CCCAGC	1 cut(s)	722
BshFI	GGCC	1 cut(s)	419
BsiHKCI	CYCGRG	2 cut(s)	86, 230
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	5 cut(s)	353, 728, 729, 803, 878
BsmAI	GTCTC	2 cut(s)	531, 921
BsmFI	GGGAC	1 cut(s)	724
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	419
BsoBI	CYCGRG	2 cut(s)	86, 230
Bsp119I	TTCGAA	1 cut(s)	567
Bsp13I	TCCGGA	1 cut(s)	625
Bsp143I	GATC	5 cut(s)	393, 465, 609, 622, 706
BspACI	CCGC	1 cut(s)	573
BspANI	GGCC	1 cut(s)	419
BspEI	TCCGGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	359, 467
BspPI	GGATC	5 cut(s)	460, 473, 617, 617, 714
BspT104I	TTCGAA	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	195, 399, 636
BssECI	CCNNGG	2 cut(s)	149, 150
BssMI	GATC	5 cut(s)	393, 465, 609, 622, 706
Bst2UI	CCWGG	2 cut(s)	151, 873
Bst4CI	ACNGT	4 cut(s)	110, 323, 789, 845
Bst6I	CTCTTC	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	434, 578, 809
BstDEI	CTNAG	2 cut(s)	596, 830
BstF5I	GGATG	3 cut(s)	25, 76, 131
BstH2I	RGCGCY	2 cut(s)	158, 895
BstHHI	GCGC	2 cut(s)	157, 894
BstKTI	GATC	5 cut(s)	396, 468, 612, 625, 709
BstMAI	GTCTC	2 cut(s)	531, 921
BstMBI	GATC	5 cut(s)	393, 465, 609, 622, 706
BstNI	CCWGG	2 cut(s)	151, 873
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	149, 871
BstV2I	GAAGAC	1 cut(s)	702
BstX2I	RGATCY	3 cut(s)	465, 622, 706
BstYI	RGATCY	3 cut(s)	465, 622, 706
BsuI	GTATCC	1 cut(s)	845
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	25, 76, 131
BtsI	GCAGTG	1 cut(s)	848
BtsIMutI	CAGTG	4 cut(s)	619, 818, 841, 848
Cac8I	GCNNGC	3 cut(s)	434, 578, 809
CfoI	GCGC	2 cut(s)	157, 894
CsiI	ACCWGGT	1 cut(s)	871
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviAII	CATG	2 cut(s)	215, 433
CviJI	RGCY	9 cut(s)	145, 203, 419, 576, 685, 784, 811, 902, 944
CviKI_1	RGCY	9 cut(s)	145, 203, 419, 576, 685, 784, 811, 902, 944
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	596, 830
DpnI	GATC	5 cut(s)	395, 467, 611, 624, 708
DpnII	GATC	5 cut(s)	393, 465, 609, 622, 706
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco147I	AGGCCT	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	123
Eco57I	CTGAAG	2 cut(s)	287, 506
Eco88I	CYCGRG	2 cut(s)	86, 230
EcoRI	GAATTC	1 cut(s)	936
EcoRII	CCWGG	2 cut(s)	149, 871
EcoRV	GATATC	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	211
FaeI	CATG	2 cut(s)	218, 436
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	2 cut(s)	214, 432
FauNDI	CATATG	2 cut(s)	101, 917
Fnu4HI	GCNGC	1 cut(s)	574
FokI	GGATG	3 cut(s)	32, 83, 118
Fsp4HI	GCNGC	1 cut(s)	574
FspBI	CTAG	2 cut(s)	497, 854
GlaI	GCGC	2 cut(s)	156, 893
GluI	GCNGC	1 cut(s)	574
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	2 cut(s)	152, 212
HaeII	RGCGCY	2 cut(s)	158, 895
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	626
HhaI	GCGC	2 cut(s)	157, 894
Hin1II	CATG	2 cut(s)	218, 436
Hin6I	GCGC	2 cut(s)	155, 892
HinP1I	GCGC	2 cut(s)	155, 892
HinfI	GANTC	7 cut(s)	64, 77, 138, 194, 541, 585, 759
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	2 cut(s)	388, 629
Hpy166II	GTNNAC	2 cut(s)	557, 848
Hpy188I	TCNGA	2 cut(s)	306, 540
Hpy8I	GTNNAC	2 cut(s)	557, 848
HpyAV	CCTTC	6 cut(s)	272, 352, 381, 473, 502, 530
HpyCH4III	ACNGT	4 cut(s)	110, 323, 789, 845
HpyCH4V	TGCA	5 cut(s)	183, 209, 436, 580, 867
HpyF3I	CTNAG	2 cut(s)	596, 830
Hsp92II	CATG	2 cut(s)	218, 436
HspAI	GCGC	2 cut(s)	155, 892
Kpn2I	TCCGGA	1 cut(s)	625
Kzo9I	GATC	5 cut(s)	393, 465, 609, 622, 706
LmnI	GCTCC	2 cut(s)	899, 949
LweI	GCATC	2 cut(s)	196, 854
MabI	ACCWGGT	1 cut(s)	871
MaeI	CTAG	2 cut(s)	497, 854
MaeIII	GTNAC	1 cut(s)	839
MalI	GATC	5 cut(s)	395, 467, 611, 624, 708
MboI	GATC	5 cut(s)	393, 465, 609, 622, 706
MboII	GAAGA	8 cut(s)	33, 39, 42, 293, 512, 556, 632, 707
MflI	RGATCY	3 cut(s)	465, 622, 706
MluCI	AATT	3 cut(s)	8, 410, 936
MlyI	GAGTC	5 cut(s)	86, 147, 203, 579, 753
MmeI	TCCRAC	1 cut(s)	399
Mph1103I	ATGCAT	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	625
MroXI	GAANNNNTTC	2 cut(s)	370, 699
MseI	TTAA	5 cut(s)	159, 461, 531, 681, 753
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	2 cut(s)	151, 873
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	2 cut(s)	151, 873
NdeI	CATATG	2 cut(s)	101, 917
NdeII	GATC	5 cut(s)	393, 465, 609, 622, 706
NlaIII	CATG	2 cut(s)	218, 436
NlaIV	GGNNCC	2 cut(s)	359, 467
NmuCI	GTSAC	1 cut(s)	839
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	567
PaeI	GCATGC	1 cut(s)	436
PaeR7I	CTCGAG	2 cut(s)	86, 230
PasI	CCCWGGG	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	419
PctI	GAATGC	1 cut(s)	575
PdmI	GAANNNNTTC	2 cut(s)	370, 699
PfeI	GAWTC	2 cut(s)	64, 541
PkrI	GCNGC	1 cut(s)	575
PleI	GAGTC	5 cut(s)	85, 146, 202, 579, 753
PpsI	GAGTC	5 cut(s)	85, 146, 202, 579, 753
Psp6I	CCWGG	2 cut(s)	149, 871
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	149, 871
PspN4I	GGNNCC	2 cut(s)	359, 467
PsuI	RGATCY	3 cut(s)	465, 622, 706
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	5 cut(s)	159, 461, 531, 681, 753
SatI	GCNGC	1 cut(s)	574
Sau3AI	GATC	5 cut(s)	393, 465, 609, 622, 706
SchI	GAGTC	5 cut(s)	86, 147, 203, 579, 753
ScrFI	CCNGG	2 cut(s)	151, 873
SexAI	ACCWGGT	1 cut(s)	871
SfaNI	GCATC	2 cut(s)	196, 854
Sfr274I	CTCGAG	2 cut(s)	86, 230
SfuI	TTCGAA	1 cut(s)	567
SlaI	CTCGAG	2 cut(s)	86, 230
SmlI	CTYRAG	6 cut(s)	86, 230, 379, 452, 545, 710
SmoI	CTYRAG	6 cut(s)	86, 230, 379, 452, 545, 710
SphI	GCATGC	1 cut(s)	436
Sse9I	AATT	3 cut(s)	8, 410, 936
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	1 cut(s)	573
SspI	AATATT	1 cut(s)	269
SspMI	CTAG	2 cut(s)	497, 854
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	2 cut(s)	149, 871
TaaI	ACNGT	4 cut(s)	110, 323, 789, 845
TaqI	TCGA	4 cut(s)	87, 231, 567, 693
TasI	AATT	3 cut(s)	8, 410, 936
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	576
TfiI	GAWTC	2 cut(s)	64, 541
Tru1I	TTAA	5 cut(s)	159, 461, 531, 681, 753
Tru9I	TTAA	5 cut(s)	159, 461, 531, 681, 753
TscAI	CASTG	4 cut(s)	619, 825, 848, 855
TseFI	GTSAC	1 cut(s)	839
Tsp45I	GTSAC	1 cut(s)	839
TspDTI	ATGAA	2 cut(s)	33, 492
TspGWI	ACGGA	2 cut(s)	827, 936
TspRI	CASTG	4 cut(s)	619, 825, 848, 855
XapI	RAATTY	1 cut(s)	936
XceI	RCATGY	1 cut(s)	436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	655
XhoI	CTCGAG	2 cut(s)	86, 230
XmnI	GAANNNNTTC	2 cut(s)	370, 699
XspI	CTAG	2 cut(s)	497, 854
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.