Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

38666844 .. 38668912

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1168500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACATCGTGCGATTCGTTGATATATTTTACAAAATTCCAGATTCCCCAAAATCTCAGAAGAATAGAGATAAGAGAGTGCAAAAATTTGAAATCACTAGTAGATGAGGAGGCTGTTGGTTCTTCTTGGTCGTCTTATTCTCATAGTTGTCTTGAGTACTTGTTTATCGATGGATGTGAATCTCTGACGTCGTTATCATTGAGTGGCCAGCTTCTCAGGACACTTAAACACCTTCAGACATACAGATGTAAACAACTGGAGCTAATCGCAGAGGACGGGTCCTTCAACGACAACACCAATCACTGCCTTGAATATATTGAGATCTGGAATTGCCAAAATCTGAAATCCTTACCGGATGGATTATGCCACCTCAGCAATCTTCAAAAGCTACATATTGAAAGATGTGGAAGTCTTGTTTCCATCCCGAGACTGAGTGGGGGGAGAAGACCCTCCAACCTGAGAAATATCTGTATCATCTATTGCGAGAAATTGGAGGCGTTGCCCGAAGACATGCACAATCTCAACTCTGTTGAGGAATTGAGAATTGACTACCATGAAGGTTTGACTTTTCCTCCCAACCTAACATTACTTCATATTTGGAAGGTCAAGAGTTGTAAGTCATTGTGGGAGTTGGAGTGGGGGTTGCACAGACTCACCTTTCTTAGCAAGTTGGGGATCTATGGTGATGACCCGGGTACGATGTCGTTTCCACCCGACATGGTCCGCATGGAGACGCTCCTCCCTAAATCTCTCGCTCATCTCTCAATACATAGCTTCCCGAATCTGAAGAAATTGAGCGGCAAAGGCTTTCAATTCCTCACCTCCCTTCAATCTCTTAGACTCTGGAATTGTCCAAAGCTAGCATCCATTCCAGATGAGGGTCTGCCTCCTTCACTTACGCAACTTTGGATCTCTGGGTGTCCAGTGCTAAAAGAGAGATGCCAACCAGGAAAAGGACACTACTGGCACAAAATATCCCACATCCCTTCCATACAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

334

Amino Acids

38.09

Weight (kDa)

7.55

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	46 - 162	7.2e-09	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	798
AciI	CCGC	2 cut(s)	724, 798
AclWI	GGATC	2 cut(s)	683, 917
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	35, 85
AcuI	CTGAAG	2 cut(s)	218, 806
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	2 cut(s)	158, 697
AfiI	CCNNNNNNNGG	2 cut(s)	878, 953
AgsI	TTSAA	7 cut(s)	91, 286, 311, 383, 398, 812, 830
AhlI	ACTAGT	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	946
AluBI	AGCT	5 cut(s)	211, 262, 388, 774, 859
AluI	AGCT	5 cut(s)	211, 262, 388, 774, 859
Alw26I	GTCTC	2 cut(s)	421, 725
AlwI	GGATC	2 cut(s)	683, 917
Ama87I	CYCGRG	2 cut(s)	424, 691
AoxI	GGCC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	35, 85
AspS9I	GGNCC	2 cut(s)	279, 721
AsuC2I	CCSGG	2 cut(s)	692, 693
AsuHPI	GGTGA	3 cut(s)	646, 695, 811
AsuNHI	GCTAGC	1 cut(s)	859
AvaI	CYCGRG	2 cut(s)	424, 691
AvaII	GGWCC	2 cut(s)	279, 721
BalI	TGGCCA	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	451, 513
BbvCI	CCTCAGC	1 cut(s)	371
BccI	CCATC	3 cut(s)	164, 350, 428
BciT130I	CCWGG	1 cut(s)	948
BcnI	CCSGG	2 cut(s)	692, 693
BcoDI	GTCTC	2 cut(s)	421, 725
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	2 cut(s)	98, 860
BglII	AGATCT	1 cut(s)	321
BisI	GCNGC	1 cut(s)	799
BlsI	GCNGC	1 cut(s)	800
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	3 cut(s)	692, 693, 948
Bme18I	GGWCC	2 cut(s)	279, 721
BmeT110I	CYCGRG	2 cut(s)	424, 691
BmgT120I	GGNCC	2 cut(s)	279, 721
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	3 cut(s)	692, 693, 948
BmsI	GCATC	2 cut(s)	872, 929
BmtI	GCTAGC	1 cut(s)	863
BpiI	GAAGAC	2 cut(s)	451, 513
BpmI	CTGGAG	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	2 cut(s)	692, 693
Bsa29I	ATCGAT	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	691
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	6 cut(s)	556, 586, 620, 626, 650, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	878, 953
Bse1I	ACTGG	3 cut(s)	261, 923, 968
Bse8I	GATNNNNATC	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	948
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	5 cut(s)	179, 361, 420, 863, 981
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	878, 953
BseMII	CTCAG	5 cut(s)	70, 229, 385, 422, 449
BseNI	ACTGG	3 cut(s)	261, 923, 968
BseRI	GAGGAG	2 cut(s)	122, 728
BshFI	GGCC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	168
BsiHKCI	CYCGRG	2 cut(s)	424, 691
BsiSI	CCGG	2 cut(s)	353, 692
BslI	CCNNNNNNNGG	2 cut(s)	878, 953
BsmAI	GTCTC	2 cut(s)	421, 725
BsmBI	CGTCTC	1 cut(s)	725
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	2 cut(s)	424, 691
Bsp143I	GATC	3 cut(s)	321, 675, 909
BspACI	CCGC	2 cut(s)	724, 798
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	5 cut(s)	69, 228, 384, 423, 450
BspDI	ATCGAT	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	280
BspOI	GCTAGC	1 cut(s)	863
BspPI	GGATC	2 cut(s)	683, 917
BsrBI	CCGCTC	1 cut(s)	798
BsrI	ACTGG	3 cut(s)	261, 923, 968
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	3 cut(s)	321, 675, 909
BssNI	GRCGYC	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	948
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	209, 861
BstDEI	CTNAG	7 cut(s)	56, 215, 371, 431, 458, 662, 836
BstF5I	GGATG	5 cut(s)	179, 361, 420, 863, 981
BstKTI	GATC	3 cut(s)	324, 678, 912
BstMAI	GTCTC	2 cut(s)	421, 725
BstMBI	GATC	3 cut(s)	321, 675, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 804
BstNI	CCWGG	1 cut(s)	948
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	3 cut(s)	690, 691, 946
BstV2I	GAAGAC	2 cut(s)	451, 513
BstX2I	RGATCY	3 cut(s)	321, 675, 909
BstYI	RGATCY	3 cut(s)	321, 675, 909
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	168
BtsCI	GGATG	5 cut(s)	179, 361, 420, 863, 981
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	301, 930
Cac8I	GCNNGC	2 cut(s)	209, 861
Cfr13I	GGNCC	2 cut(s)	279, 721
Cfr9I	CCCGGG	1 cut(s)	691
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	1 cut(s)	742
Csp6I	GTAC	2 cut(s)	157, 696
CviAII	CATG	4 cut(s)	511, 554, 718, 727
CviJI	RGCY	8 cut(s)	113, 207, 211, 262, 388, 774, 807, 859
CviKI_1	RGCY	8 cut(s)	113, 207, 211, 262, 388, 774, 807, 859
CviQI	GTAC	2 cut(s)	157, 696
DdeI	CTNAG	7 cut(s)	56, 215, 371, 431, 458, 662, 836
DpnI	GATC	3 cut(s)	323, 677, 911
DpnII	GATC	3 cut(s)	321, 675, 909
EaeI	YGGCCR	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	279, 721
Eco57I	CTGAAG	2 cut(s)	218, 806
Eco88I	CYCGRG	2 cut(s)	424, 691
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	946
Esp3I	CGTCTC	1 cut(s)	725
FaeI	CATG	4 cut(s)	514, 557, 721, 730
FatI	CATG	4 cut(s)	510, 553, 717, 726
Fnu4HI	GCNGC	1 cut(s)	799
FokI	GGATG	5 cut(s)	186, 368, 407, 850, 968
Fsp4HI	GCNGC	1 cut(s)	799
FspBI	CTAG	2 cut(s)	98, 860
GluI	GCNGC	1 cut(s)	799
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	353, 692
HgaI	GACGC	1 cut(s)	742
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	514, 557, 721, 730
HinfI	GANTC	6 cut(s)	14, 43, 179, 651, 781, 840
HpaII	CCGG	2 cut(s)	353, 692
HphI	GGTGA	3 cut(s)	646, 695, 811
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	5 cut(s)	59, 186, 237, 342, 786
Hpy188III	TCNNGA	9 cut(s)	40, 152, 217, 325, 424, 607, 778, 844, 872
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	7 cut(s)	242, 292, 551, 595, 836, 900, 996
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	3 cut(s)	81, 514, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 804
HpyF3I	CTNAG	7 cut(s)	56, 215, 371, 431, 458, 662, 836
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	4 cut(s)	514, 557, 721, 730
Kzo9I	GATC	3 cut(s)	321, 675, 909
LmnI	GCTCC	2 cut(s)	259, 741
LweI	GCATC	2 cut(s)	872, 929
MaeI	CTAG	2 cut(s)	98, 860
MaeII	ACGT	1 cut(s)	188
MalI	GATC	3 cut(s)	323, 677, 911
MbiI	CCGCTC	1 cut(s)	798
MboI	GATC	3 cut(s)	321, 675, 909
MboII	GAAGA	6 cut(s)	72, 114, 371, 456, 518, 799
MflI	RGATCY	3 cut(s)	321, 675, 909
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	9 cut(s)	35, 85, 328, 488, 536, 543, 791, 812, 847
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	645, 834
MmeI	TCCRAC	2 cut(s)	477, 612
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	244
Msp20I	TGGCCA	1 cut(s)	207
MspI	CCGG	2 cut(s)	353, 692
MspR9I	CCNGG	3 cut(s)	692, 693, 948
MvaI	CCWGG	1 cut(s)	948
MwoI	GCNNNNNNNGC	2 cut(s)	372, 804
NciI	CCSGG	2 cut(s)	692, 693
NdeII	GATC	3 cut(s)	321, 675, 909
NheI	GCTAGC	1 cut(s)	859
NlaIII	CATG	4 cut(s)	514, 557, 721, 730
NlaIV	GGNNCC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	14, 43, 179, 781
PflFI	GACNNNGTC	1 cut(s)	719
PkrI	GCNGC	1 cut(s)	800
PleI	GAGTC	2 cut(s)	645, 834
PpsI	GAGTC	2 cut(s)	645, 834
PpuMI	RGGWCCY	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	946
PspGI	CCWGG	1 cut(s)	946
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	279, 721
PspPPI	RGGWCCY	1 cut(s)	279
PsuI	RGATCY	3 cut(s)	321, 675, 909
PsyI	GACNNNGTC	1 cut(s)	719
RsaI	GTAC	2 cut(s)	158, 697
RsaNI	GTAC	2 cut(s)	157, 696
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	799
Sau3AI	GATC	3 cut(s)	321, 675, 909
Sau96I	GGNCC	2 cut(s)	279, 721
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	2 cut(s)	645, 834
ScrFI	CCNGG	3 cut(s)	692, 693, 948
SfaNI	GCATC	2 cut(s)	872, 929
SinI	GGWCC	2 cut(s)	279, 721
SmaI	CCCGGG	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	9 cut(s)	35, 85, 328, 488, 536, 543, 791, 812, 847
SsiI	CCGC	2 cut(s)	724, 798
SspMI	CTAG	2 cut(s)	98, 860
StyD4I	CCNGG	3 cut(s)	690, 691, 946
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	168
TasI	AATT	9 cut(s)	35, 85, 328, 488, 536, 543, 791, 812, 847
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	801
TfiI	GAWTC	4 cut(s)	14, 43, 179, 781
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	308, 930
TspDTI	ATGAA	2 cut(s)	570, 581
TspMI	CCCGGG	1 cut(s)	691
TspRI	CASTG	2 cut(s)	308, 930
Tth111I	GACNNNGTC	1 cut(s)	719
VpaK11BI	GGWCC	2 cut(s)	279, 721
XapI	RAATTY	2 cut(s)	35, 85
XceI	RCATGY	1 cut(s)	514
XmaI	CCCGGG	1 cut(s)	691
XspI	CTAG	2 cut(s)	98, 860
ZraI	GACGTC	1 cut(s)	189
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.