Rroxscaffold_4G00284030

NO-associated protein 1, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
5760790 .. 5762242
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284030.1

Sequence Viewer

Length: 402 bp
ATGATATTTGGATTCTCAATTCCAGCCTTTCCATTTTGTATTGTGGAATGTAGGTTGATATTGTGGACTTCAATTGTAGATTTTTGGCTCGGTGCAAATCCCATGATATTAGTCATTACTAAGGTTGATTTACTTGCCAAGGGGACTGATTTTAATTGTATTGGTGATTGGGTTGTGGAGGCCACCGTAAAGAAGAAGCTTAATGTTATGAGTGTTCATCTGACGAGTTCAAAGTCTTTGGTTGGAGTAGCTGGAGTTGCATTAGAGATTCAAAAGAAGAAGGGACGGGATGTGGATGTTATGATGAGCTTCTTTGTGGGAATTCTGGAAGTTTACTTAGTACTGATTTATATTACATTTTTCTGTAGGGCTACGCAAATGTTGGGAAATAAGCTTTTATGA

Protein Analysis

133

Amino Acids

14.85

Weight (kDa)

8.73

Isoelectric Point (pI)

19.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 321
AfaI GTAC 1 cut(s) 342
AgsI TTSAA 3 cut(s) 72, 231, 272
AluBI AGCT 4 cut(s) 199, 251, 309, 394
AluI AGCT 4 cut(s) 199, 251, 309, 394
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 364
BmcAI AGTACT 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 295, 301
BshFI GGCC 1 cut(s) 182
BslFI GGGAC 2 cut(s) 157, 297
BsmFI GGGAC 2 cut(s) 157, 297
BsnI GGCC 1 cut(s) 182
BspANI GGCC 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 120, 337
BstF5I GGATG 2 cut(s) 295, 301
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 364
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 2 cut(s) 295, 301
Csp6I GTAC 1 cut(s) 341
CviAII CATG 1 cut(s) 103
CviJI RGCY 8 cut(s) 26, 88, 182, 199, 251, 309, 371, 394
CviKI_1 RGCY 8 cut(s) 26, 88, 182, 199, 251, 309, 371, 394
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 2 cut(s) 120, 337
Eco130I CCWWGG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 106
FaiI YATR 5 cut(s) 104, 209, 302, 351, 400
FaqI GGGAC 2 cut(s) 157, 297
FatI CATG 1 cut(s) 102
FokI GGATG 2 cut(s) 302, 308
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 1 cut(s) 106
HindIII AAGCTT 2 cut(s) 197, 392
HinfI GANTC 2 cut(s) 12, 268
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 66, 334
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 2 cut(s) 66, 334
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 95, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 2 cut(s) 120, 337
Hsp92II CATG 1 cut(s) 106
LpnPI CCDG 3 cut(s) 36, 237, 311
MboII GAAGA 2 cut(s) 205, 289
MfeI CAATTG 1 cut(s) 72
MluCI AATT 4 cut(s) 18, 72, 154, 321
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 1 cut(s) 172
MseI TTAA 2 cut(s) 153, 201
MunI CAATTG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 257
NlaIII CATG 1 cut(s) 106
PfeI GAWTC 2 cut(s) 12, 268
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 153, 201
ScaI AGTACT 1 cut(s) 342
SetI ASST 6 cut(s) 56, 126, 201, 253, 311, 396
SfcI CTRYAG 1 cut(s) 364
SgeI CNNG 9 cut(s) 35, 101, 115, 146, 151, 237, 264, 299, 338
Sse9I AATT 4 cut(s) 18, 72, 154, 321
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 187
TasI AATT 4 cut(s) 18, 72, 154, 321
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 2 cut(s) 12, 268
Tru1I TTAA 2 cut(s) 153, 201
Tru9I TTAA 2 cut(s) 153, 201
TspDTI ATGAA 1 cut(s) 206
XapI RAATTY 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.