Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001049.1

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

24244 .. 25095

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001049.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atggtgtcgtgtaattctttgacgcatttcgtaaggtatcaagtaccgccaagcataagaagaatagagatagaaaaatgtcaaaatttgaaactattagtgaaggatgctggggagctagggggttgtctggagtacttgaagataagcgagtgtgcatctttgacatctttgacatcaggcaatggaggccgactacctagaacgcttaaaaatctttggttaagagactgtgaacaattggagtcgataatcaaaacattccacgatgacacttgtcttgattatattaagatagagaggtgtgcaaatcttaaatccttaccagagaggctatgccatctctccattcttcgcgccttaaaaaattttaaatgtggaagtctcatttccttcccgagaggagggctgccatccaacctgatattcttgtctatcttcgaatgcgatcaattggaagctctccccagaggcaatgacaacttcagctctcttcagactttgttattgggatcctgtggaggtttggcatccattctagaagagggtttcccacccaacgtaattaaactttatattttcggtcctaaaagttgcaagcctctctcagagtgggggcttcaccacttggacagactcacctctcttaaaatcttgtggatctatggtgtagatccagatctggtgtcctttccgccaaaggaggtgctgctccctacatctctcattaaactcaggattggaggcttcccaaatctgaagcgcctgtcatcatcttttcaatcactcacctctcttgaatccctttcaattgatcggtgcccaaagctagcatctattattggagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

283

Amino Acids

31.5

Weight (kDa)

8.53

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	819
AccII	CGCG	1 cut(s)	357
AciI	CCGC	2 cut(s)	47, 695
AclWI	GGATC	4 cut(s)	507, 520, 668, 668
AcsI	RAATTY	2 cut(s)	85, 367
AcuI	CTGAAG	3 cut(s)	469, 479, 779
AfaI	GTAC	2 cut(s)	45, 137
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	5 cut(s)	91, 142, 782, 800, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	4 cut(s)	118, 461, 489, 829
AluI	AGCT	4 cut(s)	118, 461, 489, 829
Alw26I	GTCTC	2 cut(s)	222, 389
AlwI	GGATC	4 cut(s)	507, 520, 668, 668
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	409, 709
ApoI	RAATTY	2 cut(s)	85, 367
AspLEI	GCGC	2 cut(s)	359, 765
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	3 cut(s)	614, 631, 781
AsuII	TTCGAA	1 cut(s)	441
AsuNHI	GCTAGC	1 cut(s)	829
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	824
BamHI	GGATCC	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	819
BbvI	GCAGC	2 cut(s)	396, 696
BccI	CCATC	2 cut(s)	348, 421
BcoDI	GTCTC	2 cut(s)	222, 389
BfaI	CTAG	4 cut(s)	119, 201, 539, 830
BfoI	RGCGCY	1 cut(s)	766
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	2 cut(s)	410, 710
BlsI	GCNGC	2 cut(s)	411, 711
BmcAI	AGTACT	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	514, 821
BmsI	GCATC	4 cut(s)	97, 167, 539, 842
BmtI	GCTAGC	1 cut(s)	833
BoxI	GACNNNNGTC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse3DI	GCAATG	2 cut(s)	190, 481
Bse8I	GATNNNNATC	1 cut(s)	678
BseGI	GGATG	3 cut(s)	112, 413, 530
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMI	GCAATG	2 cut(s)	190, 481
BseMII	CTCAG	2 cut(s)	621, 748
BseRI	GAGGAG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	824
BseXI	GCAGC	2 cut(s)	396, 696
BseYI	CCCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	222, 389
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	824
Bsp143I	GATC	6 cut(s)	448, 512, 660, 673, 679, 814
BspACI	CCGC	2 cut(s)	47, 695
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	620, 747
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	514, 821
BspOI	GCTAGC	1 cut(s)	833
BspPI	GGATC	4 cut(s)	507, 520, 668, 668
BspT104I	TTCGAA	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	819
BsrDI	GCAATG	2 cut(s)	190, 481
BssMI	GATC	6 cut(s)	448, 512, 660, 673, 679, 814
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	498, 537
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	599, 831
BstDEI	CTNAG	2 cut(s)	607, 734
BstF5I	GGATG	3 cut(s)	112, 413, 530
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	766
BstHHI	GCGC	2 cut(s)	359, 765
BstKTI	GATC	6 cut(s)	451, 515, 663, 676, 682, 817
BstMAI	GTCTC	2 cut(s)	222, 389
BstMBI	GATC	6 cut(s)	448, 512, 660, 673, 679, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	824
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	396, 696
BstX2I	RGATCY	4 cut(s)	512, 660, 673, 679
BstYI	RGATCY	4 cut(s)	512, 660, 673, 679
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	112, 413, 530
Cac8I	GCNNGC	2 cut(s)	599, 831
CfoI	GCGC	2 cut(s)	359, 765
Cfr13I	GGNCC	1 cut(s)	584
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	44, 136
CviQI	GTAC	2 cut(s)	44, 136
DdeI	CTNAG	2 cut(s)	607, 734
DpnI	GATC	6 cut(s)	450, 514, 662, 675, 681, 816
DpnII	GATC	6 cut(s)	448, 512, 660, 673, 679, 814
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	498, 537
EarI	CTCTTC	2 cut(s)	498, 537
EciI	GGCGGA	1 cut(s)	684
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	3 cut(s)	469, 479, 779
Eco88I	CYCGRG	1 cut(s)	397
FaiI	YATR	5 cut(s)	56, 288, 337, 576, 666
Fnu4HI	GCNGC	2 cut(s)	410, 710
FokI	GGATG	3 cut(s)	119, 400, 517
Fsp4HI	GCNGC	2 cut(s)	410, 710
FspBI	CTAG	4 cut(s)	119, 201, 539, 830
GlaI	GCGC	2 cut(s)	358, 764
GluI	GCNGC	2 cut(s)	410, 710
GsaI	CCCAGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	1 cut(s)	766
HaeIII	GGCC	1 cut(s)	192
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	2 cut(s)	359, 765
Hin6I	GCGC	2 cut(s)	357, 763
HinP1I	GCGC	2 cut(s)	357, 763
HinfI	GANTC	3 cut(s)	245, 636, 800
HphI	GGTGA	3 cut(s)	614, 631, 781
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	3 cut(s)	498, 610, 759
Hpy188III	TCNNGA	7 cut(s)	131, 281, 397, 539, 677, 736, 797
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	97, 403
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	158, 308, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	2 cut(s)	607, 734
HpySE526I	ACGT	1 cut(s)	561
HspAI	GCGC	2 cut(s)	357, 763
Kzo9I	GATC	6 cut(s)	448, 512, 660, 673, 679, 814
LmnI	GCTCC	2 cut(s)	115, 717
Lsp1109I	GCAGC	2 cut(s)	396, 696
LweI	GCATC	4 cut(s)	97, 167, 539, 842
MaeI	CTAG	4 cut(s)	119, 201, 539, 830
MaeII	ACGT	1 cut(s)	561
MalI	GATC	6 cut(s)	450, 514, 662, 675, 681, 816
MboI	GATC	6 cut(s)	448, 512, 660, 673, 679, 814
MboII	GAAGA	6 cut(s)	72, 154, 344, 430, 485, 554
MfeI	CAATTG	3 cut(s)	239, 452, 810
MflI	RGATCY	4 cut(s)	512, 660, 673, 679
MhlI	GDGCHC	1 cut(s)	824
MluCI	AATT	7 cut(s)	13, 85, 239, 367, 452, 564, 810
MlyI	GAGTC	2 cut(s)	254, 630
MmeI	TCCRAC	1 cut(s)	441
MseI	TTAA	9 cut(s)	210, 224, 291, 315, 362, 372, 567, 648, 729
MunI	CAATTG	3 cut(s)	239, 452, 810
Mva1269I	GAATGC	1 cut(s)	449
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	6 cut(s)	448, 512, 660, 673, 679, 814
NheI	GCTAGC	1 cut(s)	829
NlaIV	GGNNCC	2 cut(s)	514, 821
NspV	TTCGAA	1 cut(s)	441
PctI	GAATGC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	800
PkrI	GCNGC	2 cut(s)	411, 711
PleI	GAGTC	2 cut(s)	253, 630
PpsI	GAGTC	2 cut(s)	253, 630
PshAI	GACNNNNGTC	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	514, 821
PspPI	GGNCC	1 cut(s)	584
PsuI	RGATCY	4 cut(s)	512, 660, 673, 679
RsaI	GTAC	2 cut(s)	45, 137
RsaNI	GTAC	2 cut(s)	44, 136
SaqAI	TTAA	9 cut(s)	210, 224, 291, 315, 362, 372, 567, 648, 729
SatI	GCNGC	2 cut(s)	410, 710
Sau3AI	GATC	6 cut(s)	448, 512, 660, 673, 679, 814
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	2 cut(s)	254, 630
SduI	GDGCHC	1 cut(s)	824
SfaNI	GCATC	4 cut(s)	97, 167, 539, 842
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	1 cut(s)	584
Sse9I	AATT	7 cut(s)	13, 85, 239, 367, 452, 564, 810
SsiI	CCGC	2 cut(s)	47, 695
SspMI	CTAG	4 cut(s)	119, 201, 539, 830
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	248, 441
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	7 cut(s)	13, 85, 239, 367, 452, 564, 810
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	800
Tru1I	TTAA	9 cut(s)	210, 224, 291, 315, 362, 372, 567, 648, 729
Tru9I	TTAA	9 cut(s)	210, 224, 291, 315, 362, 372, 567, 648, 729
TseI	GCWGC	2 cut(s)	409, 709
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	2 cut(s)	85, 367
XbaI	TCTAGA	1 cut(s)	538
XspI	CTAG	4 cut(s)	119, 201, 539, 830
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.