Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000576.1

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

85977 .. 86525

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000576.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgcacaacctcaactctcttgagatattaaggatcccctattgtgaaggtttcacttccttcctagaagaggggttgcctcctaaccttcagtctcttaaagttctgaatctcaagagttgtaaaccactcttcaaatgcggcttgcacagactcacatctcttagagagttgtggatcattggtgaagatccggaactggtttcctttccacccaagaaagagatggtgcttcccaaatctctcattaagctcatcatcgaagactttccgaatctcaagtatctacccagcaaggggtttcaatccctcacatctcttaaaagactctatatctggagttgccccaagcaactgtcctttccagatgagggcagtcttctttcactgacacaacttagtattctagagaaatcaagattattcgacacaagaaagttccttgctattatatattacctgatagatactatatcttctccattttcagacaagttttcagagcttggtgcacttcattgccgttgtagctgcagaaatcaatattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

182

Amino Acids

20.98

Weight (kDa)

8.81

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	4 cut(s)	28, 41, 185, 185
AcuI	CTGAAG	1 cut(s)	74
AfiI	CCNNNNNNNGG	4 cut(s)	70, 296, 297, 371
AgsI	TTSAA	2 cut(s)	136, 305
AluBI	AGCT	3 cut(s)	253, 505, 531
AluI	AGCT	3 cut(s)	253, 505, 531
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	99
Alw44I	GTGCAC	1 cut(s)	510
AlwI	GGATC	4 cut(s)	28, 41, 185, 185
Aor13HI	TCCGGA	1 cut(s)	193
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	514
BamHI	GGATCC	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	270, 371
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	2 cut(s)	65, 407
BfmI	CTRYAG	1 cut(s)	532
BisI	GCNGC	2 cut(s)	142, 532
BlsI	GCNGC	2 cut(s)	143, 533
BmiI	GGNNCC	1 cut(s)	35
BpiI	GAAGAC	2 cut(s)	270, 371
BpmI	CTGGAG	1 cut(s)	358
BpuEI	CTTGAG	3 cut(s)	41, 98, 263
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 296, 297, 371
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	517
BseAI	TCCGGA	1 cut(s)	193
BseLI	CCNNNNNNNGG	4 cut(s)	70, 296, 297, 371
BseMI	GCAATG	1 cut(s)	517
BseNI	ACTGG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	518
BseYI	CCCAGC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	194
BslI	CCNNNNNNNGG	4 cut(s)	70, 296, 297, 371
BsmAI	GTCTC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	33, 177, 190
BspACI	CCGC	1 cut(s)	141
BspEI	TCCGGA	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	536
BspPI	GGATC	4 cut(s)	28, 41, 185, 185
BsrDI	GCAATG	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	204
BssMI	GATC	3 cut(s)	33, 177, 190
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	2 cut(s)	63, 137
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	2 cut(s)	164, 398
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstKTI	GATC	3 cut(s)	36, 180, 193
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	3 cut(s)	33, 177, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	532
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	518
BstV2I	GAAGAC	2 cut(s)	270, 371
BstX2I	RGATCY	2 cut(s)	33, 190
BstYI	RGATCY	2 cut(s)	33, 190
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	146
CviJI	RGCY	4 cut(s)	144, 253, 505, 531
CviKI_1	RGCY	4 cut(s)	144, 253, 505, 531
DdeI	CTNAG	2 cut(s)	164, 398
DpnI	GATC	3 cut(s)	35, 179, 192
DpnII	GATC	3 cut(s)	33, 177, 190
Eam1104I	CTCTTC	2 cut(s)	63, 137
EarI	CTCTTC	2 cut(s)	63, 137
Eco57I	CTGAAG	1 cut(s)	74
EcoNI	CCTNNNNNAGG	1 cut(s)	68
FaiI	YATR	4 cut(s)	333, 452, 454, 473
Fnu4HI	GCNGC	2 cut(s)	142, 532
Fsp4HI	GCNGC	2 cut(s)	142, 532
FspBI	CTAG	2 cut(s)	65, 407
GluI	GCNGC	2 cut(s)	142, 532
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	358
HapII	CCGG	1 cut(s)	194
HinfI	GANTC	4 cut(s)	109, 153, 274, 327
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	125, 512
Hpy188I	TCNGA	4 cut(s)	108, 273, 490, 502
Hpy188III	TCNNGA	7 cut(s)	20, 115, 194, 337, 365, 407, 417
Hpy8I	GTNNAC	2 cut(s)	125, 512
HpyAV	CCTTC	3 cut(s)	41, 70, 98
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	4, 148, 512, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	528
HpyF3I	CTNAG	2 cut(s)	164, 398
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	33, 177, 190
LpnPI	CCDG	6 cut(s)	185, 207, 304, 322, 378, 473
Lsp1109I	GCAGC	1 cut(s)	518
MaeI	CTAG	2 cut(s)	65, 407
MalI	GATC	3 cut(s)	35, 179, 192
MboI	GATC	3 cut(s)	33, 177, 190
MboII	GAAGA	6 cut(s)	80, 124, 200, 275, 371, 468
MflI	RGATCY	2 cut(s)	33, 190
MhlI	GDGCHC	1 cut(s)	514
MlyI	GAGTC	2 cut(s)	147, 321
MnlI	CCTC	5 cut(s)	20, 64, 90, 320, 364
MroI	TCCGGA	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	5 cut(s)	29, 99, 249, 321, 547
MspI	CCGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	528
NdeII	GATC	3 cut(s)	33, 177, 190
NlaIV	GGNNCC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	109, 274
PkrI	GCNGC	2 cut(s)	143, 533
PleI	GAGTC	2 cut(s)	147, 321
PpsI	GAGTC	2 cut(s)	147, 321
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	536
PsuI	RGATCY	2 cut(s)	33, 190
SaqAI	TTAA	5 cut(s)	29, 99, 249, 321, 547
SatI	GCNGC	2 cut(s)	142, 532
Sau3AI	GATC	3 cut(s)	33, 177, 190
SchI	GAGTC	2 cut(s)	147, 321
SduI	GDGCHC	1 cut(s)	514
SetI	ASST	7 cut(s)	12, 52, 90, 255, 462, 507, 533
SfcI	CTRYAG	1 cut(s)	532
SmlI	CTYRAG	3 cut(s)	20, 113, 278
SmoI	CTYRAG	3 cut(s)	20, 113, 278
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	2 cut(s)	65, 407
TaaI	ACNGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	261, 426
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	109, 274
Tru1I	TTAA	5 cut(s)	29, 99, 249, 321, 547
Tru9I	TTAA	5 cut(s)	29, 99, 249, 321, 547
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	1 cut(s)	531
TspDTI	ATGAA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	393
VneI	GTGCAC	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	68
XbaI	TCTAGA	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	2 cut(s)	65, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.