Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

7812513 .. 7812845

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTGTCCTTTCCACCAGAGGATATAGAGTTGATGCTCCCTAAATCCCTCAGTAGACTCGACATTGCAAACTTCCCAAGTCTGAGGCGCCTATCCAGGAAGGCCCTTCAGTCCCTCACCTCCCTTGAATATCTTGAGATTGCTGATTGTCAAAAGCTAGCATCCATTCCAGAGAAGTATCTGCCTCTTTCACTTGCAAAACTTCACATATATGCATGTCCGAAGCTAAAAGATAGATACACTTGCAACACAACATACTGGTCCAAAATAGCTCACATCCCTTGCGTACATATTGGAGATGAGTATTTGAGCCCACTGAAGACTCACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

110

Amino Acids

12.59

Weight (kDa)

8.69

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	4 cut(s)	157, 226, 272, 330
AluI	AGCT	4 cut(s)	157, 226, 272, 330
AoxI	GGCC	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	103, 261
AsuHPI	GGTGA	1 cut(s)	109
AsuNHI	GCTAGC	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	97
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	103, 261
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	24, 170
BmtI	GCTAGC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	161, 276
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	64, 74
BseNI	ACTGG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	63, 75
BspLI	GGNNCC	1 cut(s)	89
BspOI	GCTAGC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	263
BssNI	GRCGYC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	50, 83
BstF5I	GGATG	2 cut(s)	161, 276
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	161, 276
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	159
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	103, 261
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	6 cut(s)	104, 157, 226, 272, 312, 330
CviKI_1	RGCY	6 cut(s)	104, 157, 226, 272, 312, 330
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	2 cut(s)	50, 83
DinI	GGCGCC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	314
EgeI	GGCGCC	1 cut(s)	89
EheI	GGCGCC	1 cut(s)	89
FaeI	CATG	1 cut(s)	219
FaiI	YATR	7 cut(s)	26, 209, 211, 213, 217, 256, 291
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	55
FokI	GGATG	2 cut(s)	148, 263
FriOI	GRGCYC	1 cut(s)	314
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	57, 322
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	84, 222
Hpy188III	TCNNGA	2 cut(s)	134, 170
Hpy8I	GTNNAC	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	94, 116
HpyCH4V	TGCA	4 cut(s)	68, 197, 215, 246
HpyF3I	CTNAG	2 cut(s)	50, 83
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	219
HspAI	GCGC	1 cut(s)	88
KasI	GGCGCC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	5 cut(s)	30, 82, 109, 183, 244
LweI	GCATC	2 cut(s)	24, 170
MaeI	CTAG	1 cut(s)	158
MboII	GAAGA	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	314
Mly113I	GGCGCC	1 cut(s)	88
MlyI	GAGTC	2 cut(s)	51, 316
MnlI	CCTC	6 cut(s)	13, 59, 78, 125, 130, 195
Mph1103I	ATGCAT	1 cut(s)	217
MslI	CAYNNNNRTG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
NarI	GGCGCC	1 cut(s)	88
NheI	GCTAGC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	219
PfoI	TCCNGGA	1 cut(s)	95
PleI	GAGTC	2 cut(s)	51, 316
PluTI	GGCGCC	1 cut(s)	91
PpsI	GAGTC	2 cut(s)	51, 316
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	103, 261
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	103, 261
SchI	GAGTC	2 cut(s)	51, 316
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	5 cut(s)	122, 159, 228, 274, 332
SfaNI	GCATC	2 cut(s)	24, 170
SfoI	GGCGCC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SspDI	GGCGCC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	95
TaqI	TCGA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	321
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	261
XceI	RCATGY	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.