Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

2153985 .. 2154476

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCACAATCTCAACTCTCTTGAGGATTTGAGCATCGACTACCATGAAGCTTTGACTTTTCCTCCCAACCTCACGTTTCTTGAAATTAATAAGGTCAAGAGCTGTAAGTCATTGTGGGAGTTGGAGTCGGGGTTGCACAGACTCACCTCTCTTACAGACTTGGGAATCAATGGTGAAGACCCGGATACGGTGTCGTTTCCACCCAACATGGTACGGATGGAGACGCTCTTCCCCAAATCTCTCACTAGCCTCTCAATAGAAGGCTTCCCGAATCTGAAGAAACTGAGCAGCAAGGGCTTTCAATTCCTCACCTCCCTTAAATCTCTGGATCTCTGGTATTGTCCAAAGCTAGCATCCATTCCAGAGGAGGGTCTGCCTTCTTCACTAGAGAGACTCGCCATCCATAGGTGTCCAGTGCTAAAAGAGAGATGCCAACCAGGAAAAGGACGCTACTGGCACAAAATATCCCACATCCCTTACATAAGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

164

Amino Acids

18.52

Weight (kDa)

7.0

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	187, 368, 405, 443
AgsI	TTSAA	2 cut(s)	83, 302
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	3 cut(s)	50, 102, 349
AluI	AGCT	3 cut(s)	50, 102, 349
Alw26I	GTCTC	2 cut(s)	215, 385
AlwI	GGATC	1 cut(s)	336
ApeKI	GCWGC	1 cut(s)	288
AseI	ATTAAT	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	136, 185, 301
AsuNHI	GCTAGC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	211, 407
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	215, 385
BfaI	CTAG	3 cut(s)	246, 350, 386
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	2 cut(s)	182, 438
BmrFI	CCNGG	2 cut(s)	182, 438
BmsI	GCATC	3 cut(s)	42, 362, 419
BmtI	GCTAGC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 110, 116, 140, 146
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 368, 405, 443
Bse1I	ACTGG	2 cut(s)	413, 458
BseBI	CCWGG	1 cut(s)	438
BseGI	GGATG	4 cut(s)	222, 353, 399, 471
BseLI	CCNNNNNNNGG	4 cut(s)	187, 368, 405, 443
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	413, 458
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	4 cut(s)	187, 368, 405, 443
BsmAI	GTCTC	2 cut(s)	215, 385
BsmBI	CGTCTC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	276
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	336
BspQI	GCTCTTC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	413, 458
BssMI	GATC	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	4 cut(s)	222, 353, 399, 471
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	215, 385
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	180, 436
BstV1I	GCAGC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	222, 353, 399, 471
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	351
CseI	GACGC	2 cut(s)	232, 456
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	2 cut(s)	44, 208
CviJI	RGCY	6 cut(s)	50, 102, 249, 264, 297, 349
CviKI_1	RGCY	6 cut(s)	50, 102, 249, 264, 297, 349
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	2 cut(s)	47, 211
FaiI	YATR	6 cut(s)	45, 209, 405, 482, 488, 490
FatI	CATG	2 cut(s)	43, 207
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	4 cut(s)	229, 340, 386, 458
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	3 cut(s)	246, 350, 386
GluI	GCNGC	1 cut(s)	289
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	2 cut(s)	232, 456
Hin1II	CATG	2 cut(s)	47, 211
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	5 cut(s)	125, 141, 165, 271, 393
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	3 cut(s)	136, 185, 301
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	6 cut(s)	20, 80, 97, 268, 326, 362
HpyAV	CCTTC	2 cut(s)	254, 387
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	2 cut(s)	4, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	47, 211
Kzo9I	GATC	1 cut(s)	328
LguI	GCTCTTC	1 cut(s)	233
LpnPI	CCDG	8 cut(s)	195, 311, 319, 375, 423, 426, 439, 450
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	3 cut(s)	42, 362, 419
MaeI	CTAG	3 cut(s)	246, 350, 386
MaeII	ACGT	1 cut(s)	74
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	4 cut(s)	188, 220, 289, 372
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	2 cut(s)	84, 302
MlyI	GAGTC	3 cut(s)	134, 135, 387
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	9 cut(s)	16, 72, 80, 157, 260, 317, 322, 358, 361
MseI	TTAA	2 cut(s)	87, 318
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	182, 438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	294
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	328
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	47, 211
PciSI	GCTCTTC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	165, 271
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	3 cut(s)	133, 135, 387
PpsI	GAGTC	3 cut(s)	133, 135, 387
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	87, 318
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	1 cut(s)	328
SchI	GAGTC	3 cut(s)	134, 135, 387
ScrFI	CCNGG	2 cut(s)	182, 438
SetI	ASST	9 cut(s)	52, 72, 77, 96, 104, 149, 314, 351, 410
SfaNI	GCATC	3 cut(s)	42, 362, 419
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	84, 302
SspMI	CTAG	3 cut(s)	246, 350, 386
StyD4I	CCNGG	2 cut(s)	180, 436
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	84, 302
TfiI	GAWTC	2 cut(s)	165, 271
Tru1I	TTAA	2 cut(s)	87, 318
Tru9I	TTAA	2 cut(s)	87, 318
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	420
VspI	ATTAAT	1 cut(s)	87
XspI	CTAG	3 cut(s)	246, 350, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.