RchiOBHm_Chr1g0320441

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001766
Physical Location & Seq
Reverse (-)
8088886 .. 8091788
2903 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55059

Sequence Viewer

Length: 543 bp
ATGGTCAAGCACAACCTCAGCTCTCTTCAGAGATTAACAATCGCTTACTGTAAAGGTTTGGTGTCCATTCTAGAAGAGGGTTTTCCCTCAAACCTAACAATACTTAAAATTGTGGATCCCAAGAGTTGTAAGCCACTCTCTGAGTGGGGCTTGCAGTTGGAGAAACTCACCTCTCTAAAAGAGTTGTGGATCTCTGGTGTAGATCCATATCTGGTGTCCTTTCCACCAAAGGATATAGAGTTGATGCTCCCTAAATCCCTCAGTAGACTCGACATTGCAAACTTCCCAAGTCTGAGGCGCCTATCCAGGAAGGCCCTTCAGTCCCTCACCTCTCTTGAATATCTTGAGATTGCTGATTGTCAAAAGCTAGCATCCATTCCCGAGAAGTATCTGCCTCTTTCACTTGCAAAACTTCACATATATGCATGTCCGAAGCTAAAAGATAGATACACTTGCAACACAACATACTGGTCCAAAATAGCTCACATCCCTTGCGTACATGTTGGAGATGAGTATTTGAGCCCACTGAAGACTCACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

180

Amino Acids

20.41

Weight (kDa)

8.97

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 265
AclWI GGATC 4 cut(s) 110, 123, 197, 197
AcuI CTGAAG 2 cut(s) 11, 302
AcyI GRCGYC 1 cut(s) 298
AfaI GTAC 1 cut(s) 498
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 4 cut(s) 21, 367, 436, 482
AluI AGCT 4 cut(s) 21, 367, 436, 482
AlwI GGATC 4 cut(s) 110, 123, 197, 197
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 313, 471
AsuHPI GGTGA 2 cut(s) 160, 319
AsuNHI GCTAGC 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 1 cut(s) 471
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 536
BbvCI CCTCAGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 307
BfaI CTAG 2 cut(s) 71, 368
BfoI RGCGCY 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 471
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 313, 471
BmiI GGNNCC 2 cut(s) 117, 299
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 234, 380
BmtI GCTAGC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 536
Bpu10I CCTNAGC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 307
BseGI GGATG 2 cut(s) 371, 486
BseJI GATNNNNATC 1 cut(s) 207
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 4 cut(s) 31, 132, 274, 284
BseNI ACTGG 1 cut(s) 473
BshFI GGCC 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 3 cut(s) 115, 189, 202
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 4 cut(s) 30, 133, 273, 285
BspLI GGNNCC 2 cut(s) 117, 299
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 4 cut(s) 110, 123, 197, 197
BspT107I GGYRCC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 473
BssMI GATC 3 cut(s) 115, 189, 202
BssNI GRCGYC 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 50, 539
Bst6I CTCTTC 2 cut(s) 30, 69
BstACI GRCGYC 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 152, 369
BstDEI CTNAG 4 cut(s) 17, 141, 260, 293
BstF5I GGATG 2 cut(s) 371, 486
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 3 cut(s) 118, 192, 205
BstMBI GATC 3 cut(s) 115, 189, 202
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 2 cut(s) 429, 503
BstSCI CCNGG 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 3 cut(s) 115, 189, 202
BstYI RGATCY 3 cut(s) 115, 189, 202
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 2 cut(s) 371, 486
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 2 cut(s) 152, 369
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 313, 471
Csp6I GTAC 1 cut(s) 497
CviAII CATG 2 cut(s) 426, 500
CviJI RGCY 8 cut(s) 21, 133, 150, 314, 367, 436, 482, 522
CviKI_1 RGCY 8 cut(s) 21, 133, 150, 314, 367, 436, 482, 522
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 4 cut(s) 17, 141, 260, 293
DinI GGCGCC 1 cut(s) 299
DpnI GATC 3 cut(s) 117, 191, 204
DpnII GATC 3 cut(s) 115, 189, 202
Eam1104I CTCTTC 2 cut(s) 30, 69
EarI CTCTTC 2 cut(s) 30, 69
Eco24I GRGCYC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 471
Eco57I CTGAAG 2 cut(s) 11, 302
Eco88I CYCGRG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 305
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 524
EgeI GGCGCC 1 cut(s) 299
EheI GGCGCC 1 cut(s) 299
FaeI CATG 2 cut(s) 429, 503
FaiI YATR 8 cut(s) 208, 236, 419, 421, 423, 427, 466, 501
FaqI GGGAC 1 cut(s) 307
FatI CATG 2 cut(s) 425, 499
FblI GTMKAC 1 cut(s) 265
FokI GGATG 2 cut(s) 358, 473
FriOI GRGCYC 1 cut(s) 524
FspBI CTAG 2 cut(s) 71, 368
GlaI GCGC 1 cut(s) 299
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 1 cut(s) 314
HhaI GCGC 1 cut(s) 300
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 2 cut(s) 429, 503
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 2 cut(s) 267, 532
HphI GGTGA 2 cut(s) 160, 319
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 4 cut(s) 30, 142, 294, 432
Hpy188III TCNNGA 4 cut(s) 71, 335, 344, 380
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 304, 326
HpyCH4III ACNGT 2 cut(s) 50, 539
HpyCH4V TGCA 5 cut(s) 154, 278, 407, 425, 456
HpyF3I CTNAG 4 cut(s) 17, 141, 260, 293
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 2 cut(s) 429, 503
HspAI GCGC 1 cut(s) 298
KasI GGCGCC 1 cut(s) 297
Kzo9I GATC 3 cut(s) 115, 189, 202
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 5 cut(s) 180, 197, 292, 319, 454
LweI GCATC 2 cut(s) 234, 380
MaeI CTAG 2 cut(s) 71, 368
MalI GATC 3 cut(s) 117, 191, 204
MboI GATC 3 cut(s) 115, 189, 202
MboII GAAGA 3 cut(s) 17, 86, 541
MflI RGATCY 3 cut(s) 115, 189, 202
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 1 cut(s) 108
Mly113I GGCGCC 1 cut(s) 298
MlyI GAGTC 2 cut(s) 261, 526
MmeI TCCRAC 2 cut(s) 138, 484
MnlI CCTC 9 cut(s) 26, 70, 97, 181, 269, 288, 335, 340, 405
Mph1103I ATGCAT 1 cut(s) 427
MseI TTAA 3 cut(s) 35, 105, 541
MslI CAYNNNNRTG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
NarI GGCGCC 1 cut(s) 298
NdeII GATC 3 cut(s) 115, 189, 202
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 2 cut(s) 429, 503
NlaIV GGNNCC 2 cut(s) 117, 299
NsiI ATGCAT 1 cut(s) 427
NspI RCATGY 2 cut(s) 429, 503
PciI ACATGT 1 cut(s) 499
PfoI TCCNGGA 1 cut(s) 305
PleI GAGTC 2 cut(s) 261, 526
PluTI GGCGCC 1 cut(s) 301
PpsI GAGTC 2 cut(s) 261, 526
PscI ACATGT 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 117, 299
PspPI GGNCC 2 cut(s) 313, 471
PsuI RGATCY 3 cut(s) 115, 189, 202
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 3 cut(s) 35, 105, 541
Sau3AI GATC 3 cut(s) 115, 189, 202
Sau96I GGNCC 2 cut(s) 313, 471
SchI GAGTC 2 cut(s) 261, 526
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 524
SetI ASST 9 cut(s) 18, 23, 58, 96, 173, 332, 369, 438, 484
SfaNI GCATC 2 cut(s) 234, 380
SfoI GGCGCC 1 cut(s) 299
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 108
SspDI GGCGCC 1 cut(s) 297
SspMI CTAG 2 cut(s) 71, 368
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 50, 539
TaqI TCGA 1 cut(s) 270
TasI AATT 1 cut(s) 108
Tru1I TTAA 3 cut(s) 35, 105, 541
Tru9I TTAA 3 cut(s) 35, 105, 541
TscAI CASTG 1 cut(s) 531
TspRI CASTG 1 cut(s) 531
VpaK11BI GGWCC 1 cut(s) 471
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 2 cut(s) 429, 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 265
XspI CTAG 2 cut(s) 71, 368
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.