Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

6117476 .. 6119767

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026798

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAATCTCAAGGGTTGCACAGACTCACATCTTTGAGAGAACTGACTCTATGGGGTAAAGATGATCCAGGTCTGGTGTCCTTTCCACCTGGTGAGAATTCGAAGGAGAAAGAGATGCTGCTCCCCAGATCTCTTGTTGATTTACTTGCTAAGGGGATTGATTTTAATTGTATTGGTGATTGGGTTGTGGAGGTCACCATACAGAAGAAGCTTAATGTTATGAGTGTTCATCTGACGAGTTCAAAGTCTTTGGTTGGAGTAGCTGGAGTTGCATTAGAGATTCAAAAGGAGAAGAAGGGACGGGACGTGCATGTTATGTTCTTCAAATTCTCTAGAATGGTTTGCTACTTGTCTAAAAGATCTGTGTGTGCCAATGGCCAAGATTACTGTGACACCAAAACTGATGGCAGAAAAGGATGCATGCGCAAAAGTACAAACCAATACAATCTGCTGTTCCTGGAGCTTCCTTGGGTCCAATTCAAATCAATGCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko04626 map00220 map00330 map01100 map01110 map01130 map04626

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

166

Amino Acids

18.68

Weight (kDa)

9.11

Isoelectric Point (pI)

22.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	425
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	97, 326
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	433
AgsI	TTSAA	4 cut(s)	243, 284, 325, 481
AjiI	CACGTC	1 cut(s)	307
AjnI	CCWGG	3 cut(s)	67, 88, 456
AluBI	AGCT	3 cut(s)	211, 263, 463
AluI	AGCT	3 cut(s)	211, 263, 463
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	2 cut(s)	97, 326
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	472
AsuHPI	GGTGA	3 cut(s)	104, 187, 188
AsuII	TTCGAA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	3 cut(s)	69, 90, 458
BfaI	CTAG	1 cut(s)	333
BglII	AGATCT	2 cut(s)	128, 359
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	69, 90, 458
Bme18I	GGWCC	1 cut(s)	472
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	3 cut(s)	69, 90, 458
BmsI	GCATC	2 cut(s)	105, 407
BpmI	CTGGAG	2 cut(s)	285, 479
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	467
BseBI	CCWGG	3 cut(s)	69, 90, 458
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	105
BshFI	GGCC	1 cut(s)	378
BslFI	GGGAC	2 cut(s)	312, 317
BsmFI	GGGAC	2 cut(s)	312, 317
BsnI	GGCC	1 cut(s)	378
Bsp119I	TTCGAA	1 cut(s)	101
Bsp143I	GATC	3 cut(s)	64, 128, 359
BspANI	GGCC	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	473
BspPI	GGATC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	3 cut(s)	64, 128, 359
BssT1I	CCWWGG	1 cut(s)	467
Bst2UI	CCWGG	3 cut(s)	69, 90, 458
Bst4CI	ACNGT	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	150, 495
BstEII	GGTNACC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	3 cut(s)	67, 131, 362
BstMBI	GATC	3 cut(s)	64, 128, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	3 cut(s)	69, 90, 458
BstNSI	RCATGY	2 cut(s)	314, 424
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	3 cut(s)	67, 88, 456
BstV1I	GCAGC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	128, 359
BstYI	RGATCY	2 cut(s)	128, 359
BsuRI	GGCC	1 cut(s)	378
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	422
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	472
CsiI	ACCWGGT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	2 cut(s)	311, 421
CviJI	RGCY	4 cut(s)	211, 263, 378, 463
CviKI_1	RGCY	4 cut(s)	211, 263, 378, 463
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	2 cut(s)	150, 495
DpnI	GATC	3 cut(s)	66, 130, 361
DpnII	GATC	3 cut(s)	64, 128, 359
DraIII	CACNNNGTG	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	472
Eco91I	GGTNACC	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	3 cut(s)	67, 88, 456
EcoT14I	CCWWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	2 cut(s)	314, 424
FaiI	YATR	6 cut(s)	52, 200, 221, 312, 317, 422
FaqI	GGGAC	2 cut(s)	312, 317
FatI	CATG	2 cut(s)	310, 420
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	333
FspI	TGCGCA	1 cut(s)	425
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	119
GsuI	CTGGAG	2 cut(s)	285, 479
HaeIII	GGCC	1 cut(s)	378
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	314, 424
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	4 cut(s)	5, 24, 46, 280
HphI	GGTGA	3 cut(s)	104, 187, 188
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	333
HpyAV	CCTTC	2 cut(s)	97, 289
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	19, 272, 310, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	150, 495
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	314, 424
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	64, 128, 359
LmnI	GCTCC	2 cut(s)	126, 460
LpnPI	CCDG	9 cut(s)	54, 59, 75, 81, 102, 139, 249, 443, 470
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	2 cut(s)	105, 407
MabI	ACCWGGT	1 cut(s)	88
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	193, 389
MalI	GATC	3 cut(s)	66, 130, 361
MboI	GATC	3 cut(s)	64, 128, 359
MboII	GAAGA	3 cut(s)	217, 304, 313
MflI	RGATCY	2 cut(s)	128, 359
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	4 cut(s)	97, 166, 326, 476
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	18, 40
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	1 cut(s)	184
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	2 cut(s)	165, 213
Msp20I	TGGCCA	1 cut(s)	378
MspR9I	CCNGG	3 cut(s)	69, 90, 458
MvaI	CCWGG	3 cut(s)	69, 90, 458
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	3 cut(s)	64, 128, 359
NlaIII	CATG	2 cut(s)	314, 424
NlaIV	GGNNCC	1 cut(s)	473
NmuCI	GTSAC	2 cut(s)	193, 389
NsbI	TGCGCA	1 cut(s)	425
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	2 cut(s)	314, 424
NspV	TTCGAA	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	5, 280
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	18, 40
PpsI	GAGTC	2 cut(s)	18, 40
Psp6I	CCWGG	3 cut(s)	67, 88, 456
PspEI	GGTNACC	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	67, 88, 456
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	1 cut(s)	472
PsuI	RGATCY	2 cut(s)	128, 359
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	165, 213
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	3 cut(s)	64, 128, 359
Sau96I	GGNCC	1 cut(s)	472
SchI	GAGTC	2 cut(s)	18, 40
ScrFI	CCNGG	3 cut(s)	69, 90, 458
SetI	ASST	7 cut(s)	73, 91, 195, 213, 265, 309, 465
SexAI	ACCWGGT	1 cut(s)	88
SfaNI	GCATC	2 cut(s)	105, 407
SfuI	TTCGAA	1 cut(s)	101
SinI	GGWCC	1 cut(s)	472
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	424
Sse9I	AATT	4 cut(s)	97, 166, 326, 476
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	67, 88, 456
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	101
TasI	AATT	4 cut(s)	97, 166, 326, 476
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	2 cut(s)	5, 280
Tru1I	TTAA	2 cut(s)	165, 213
Tru9I	TTAA	2 cut(s)	165, 213
TseFI	GTSAC	2 cut(s)	193, 389
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	2 cut(s)	193, 389
TspDTI	ATGAA	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	472
XapI	RAATTY	2 cut(s)	97, 326
XbaI	TCTAGA	1 cut(s)	332
XceI	RCATGY	2 cut(s)	314, 424
XspI	CTAG	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.