Rh1BG007600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001766
Physical Location & Seq
Forward (+)
904595 .. 905547
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG007600.1

Sequence Viewer

Length: 795 bp
ATGAGCTCACTCTTTCTGAAACAGAGAGAAAAGAGAACAATAAGGGTACCTTATACGTACGTAACGATAATAATGAAATATCTATGTTTCATACATTACAAAATCGATTTTCCTCTTGAACGACATCAGGGAACTATAGATTTTCCTTGCCTGAAAAAGCTTCCCATTTATGCATGCCCCAAACTGGAGGGTGTGGTAGAGCTTTTATTTGATTTGGAGATAACTGGCTGTGAGGAGCTGACATGTTCATTGCCGAATGAGGATGGATTTCTGCAAAACCTTATGTCACTTCGTGATTTGAGTATTGAAGGTAACTCACATCTTGTTCAATTGCATCACCTCAGCTTACTACAAGAGCTTCACATTGATAAGTGGCCAAGCCTAGTTTCTTTTCCATTGGCTAGTTTGCCACCTTCTCTTAAAGATATAAAGATTCGAGGTTGCGATTCTCTTACTTATTTTGCAAGATATCAGATACCGCCAAGTCTAAGGAGAATAGAGATAAATAGACTCTATATCTGGAGATTCGAGGTTCCGATTCTCTTACTTATTCTCAAGTATCTACCCAGCAAAGGGTTTCAGTCCCTCACATCTCTTAAAAGACTCTATATCTGGAGTTGCCCCAAGCTACTGTCCATTCCAGATGAAGGCAGGCTTCTTTCACTGACACAACTTAGTATCCGTCACTGTCCACTGCTAGAAGTGAGATGCAAACCAGGTAAAGGTCGGTATTGGCGCTCCATAGCCCACATCCCTTACATGTGGTTGGGAGACAAGAGAATTCAAGCTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

264

Amino Acids

30.87

Weight (kDa)

9.24

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 46
AciI CCGC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 374
AcsI RAATTY 1 cut(s) 780
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 2 cut(s) 48, 59
AfiI CCNNNNNNNGG 5 cut(s) 184, 572, 573, 647, 722
AflIII ACRYGT 2 cut(s) 242, 759
AgsI TTSAA 4 cut(s) 119, 308, 329, 785
AjnI CCWGG 1 cut(s) 715
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AluBI AGCT 8 cut(s) 6, 160, 202, 238, 345, 358, 628, 788
AluI AGCT 8 cut(s) 6, 160, 202, 238, 345, 358, 628, 788
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 765
AoxI GGCC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 780
Asp718I GGTACC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 738
AsuHPI GGTGA 1 cut(s) 329
BalI TGGCCA 1 cut(s) 376
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 341
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 717
BciVI GTATCC 1 cut(s) 689
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 3 cut(s) 383, 402, 698
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 739
BfuI GTATCC 1 cut(s) 689
Bme1390I CCNGG 1 cut(s) 717
BmiI GGNNCC 2 cut(s) 48, 534
BmrFI CCNGG 1 cut(s) 717
BmsI GCATC 2 cut(s) 343, 698
BpmI CTGGAG 3 cut(s) 206, 541, 634
Bpu10I CCTNAGC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 539
Bsa29I ATCGAT 1 cut(s) 105
BsaAI YACGTR 2 cut(s) 57, 61
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 572, 573, 647, 722
Bse1I ACTGG 2 cut(s) 189, 229
Bse3DI GCAATG 1 cut(s) 248
BseBI CCWGG 1 cut(s) 717
BseCI ATCGAT 1 cut(s) 105
BseGI GGATG 2 cut(s) 268, 750
BseLI CCNNNNNNNGG 5 cut(s) 184, 572, 573, 647, 722
BseMI GCAATG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 355
BseNI ACTGG 2 cut(s) 189, 229
BseRI GAGGAG 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 566
BshFI GGCC 1 cut(s) 376
BshNI GGYRCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 8
BsiWI CGTACG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 5 cut(s) 184, 572, 573, 647, 722
BsmAI GTCTC 1 cut(s) 765
BsmFI GGGAC 1 cut(s) 568
BsnI GGCC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 1 cut(s) 479
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 1 cut(s) 354
BspDI ATCGAT 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 48, 534
BspT107I GGYRCC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 248
BsrI ACTGG 2 cut(s) 189, 229
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 2 cut(s) 633, 689
BstBAI YACGTR 2 cut(s) 57, 61
BstC8I GCNNGC 2 cut(s) 175, 653
BstDEI CTNAG 3 cut(s) 341, 488, 674
BstF5I GGATG 2 cut(s) 268, 750
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 1 cut(s) 738
BstMAI GTCTC 1 cut(s) 765
BstNI CCWGG 1 cut(s) 717
BstNSI RCATGY 3 cut(s) 177, 246, 763
BstSCI CCNGG 1 cut(s) 715
BstSFI CTRYAG 1 cut(s) 135
BstSNI TACGTA 2 cut(s) 57, 61
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 1 cut(s) 376
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 2 cut(s) 268, 750
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 3 cut(s) 662, 685, 692
Cac8I GCNNGC 2 cut(s) 175, 653
CfoI GCGC 1 cut(s) 738
ClaI ATCGAT 1 cut(s) 105
CsiI ACCWGGT 1 cut(s) 715
Csp6I GTAC 2 cut(s) 47, 58
CviAII CATG 3 cut(s) 174, 243, 760
CviQI GTAC 2 cut(s) 47, 58
DdeI CTNAG 3 cut(s) 341, 488, 674
DraIII CACNNNGTG 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 6
Eco105I TACGTA 2 cut(s) 57, 61
Eco24I GRGCYC 1 cut(s) 8
Eco32I GATATC 1 cut(s) 470
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 1 cut(s) 780
EcoRII CCWGG 1 cut(s) 715
EcoRV GATATC 1 cut(s) 470
EcoT22I ATGCAT 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 3 cut(s) 177, 246, 763
FalI AAGNNNNNCTT 4 cut(s) 34, 66, 639, 671
FaqI GGGAC 1 cut(s) 568
FatI CATG 3 cut(s) 173, 242, 759
FokI GGATG 2 cut(s) 275, 737
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 3 cut(s) 383, 402, 698
GlaI GCGC 1 cut(s) 737
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 3 cut(s) 206, 541, 634
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 1 cut(s) 376
HhaI GCGC 1 cut(s) 738
Hin1II CATG 3 cut(s) 177, 246, 763
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 6 cut(s) 433, 446, 510, 525, 538, 603
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 692
Hpy188I TCNGA 3 cut(s) 18, 474, 537
Hpy188III TCNNGA 5 cut(s) 116, 293, 520, 613, 641
Hpy8I GTNNAC 1 cut(s) 692
HpyAV CCTTC 3 cut(s) 302, 423, 641
HpyCH4III ACNGT 2 cut(s) 633, 689
HpyCH4IV ACGT 2 cut(s) 56, 60
HpyCH4V TGCA 5 cut(s) 173, 274, 334, 464, 711
HpyF3I CTNAG 3 cut(s) 341, 488, 674
HpySE526I ACGT 2 cut(s) 56, 60
Hsp92II CATG 3 cut(s) 177, 246, 763
HspAI GCGC 1 cut(s) 736
KpnI GGTACC 1 cut(s) 50
LmnI GCTCC 3 cut(s) 235, 743, 793
LweI GCATC 2 cut(s) 343, 698
MabI ACCWGGT 1 cut(s) 715
MaeI CTAG 3 cut(s) 383, 402, 698
MaeII ACGT 2 cut(s) 56, 60
MaeIII GTNAC 4 cut(s) 61, 285, 311, 683
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 376
MluCI AATT 2 cut(s) 329, 780
MluNI TGGCCA 1 cut(s) 376
MlyI GAGTC 2 cut(s) 504, 597
MnlI CCTC 8 cut(s) 123, 181, 226, 253, 350, 431, 523, 596
Mox20I TGGCCA 1 cut(s) 376
Mph1103I ATGCAT 1 cut(s) 175
MscI TGGCCA 1 cut(s) 376
MseI TTAA 2 cut(s) 420, 597
Msp20I TGGCCA 1 cut(s) 376
MspR9I CCNGG 1 cut(s) 717
MunI CAATTG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 717
NlaIII CATG 3 cut(s) 177, 246, 763
NlaIV GGNNCC 2 cut(s) 48, 534
NmuCI GTSAC 2 cut(s) 285, 683
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 3 cut(s) 177, 246, 763
PaeI GCATGC 1 cut(s) 177
PciI ACATGT 2 cut(s) 242, 759
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PfeI GAWTC 4 cut(s) 433, 446, 525, 538
Pfl23II CGTACG 1 cut(s) 57
PleI GAGTC 2 cut(s) 504, 597
PpsI GAGTC 2 cut(s) 504, 597
Ppu21I YACGTR 2 cut(s) 57, 61
PscI ACATGT 2 cut(s) 242, 759
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 715
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 1 cut(s) 715
PspLI CGTACG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 48, 534
RsaI GTAC 2 cut(s) 48, 59
RsaNI GTAC 2 cut(s) 47, 58
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 420, 597
SchI GAGTC 2 cut(s) 504, 597
ScrFI CCNGG 1 cut(s) 717
SduI GDGCHC 1 cut(s) 8
SexAI ACCWGGT 1 cut(s) 715
SfaNI GCATC 2 cut(s) 343, 698
SfcI CTRYAG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SnaBI TACGTA 2 cut(s) 57, 61
SphI GCATGC 1 cut(s) 177
Sse9I AATT 2 cut(s) 329, 780
SsiI CCGC 1 cut(s) 479
SspMI CTAG 3 cut(s) 383, 402, 698
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 715
TaaI ACNGT 2 cut(s) 633, 689
TaiI ACGT 2 cut(s) 59, 63
TaqI TCGA 3 cut(s) 105, 436, 528
TasI AATT 2 cut(s) 329, 780
TfiI GAWTC 4 cut(s) 433, 446, 525, 538
Tru1I TTAA 2 cut(s) 420, 597
Tru9I TTAA 2 cut(s) 420, 597
TscAI CASTG 3 cut(s) 669, 692, 699
TseFI GTSAC 2 cut(s) 285, 683
Tsp45I GTSAC 2 cut(s) 285, 683
TspDTI ATGAA 4 cut(s) 79, 89, 237, 660
TspGWI ACGGA 2 cut(s) 671, 780
TspRI CASTG 3 cut(s) 669, 692, 699
XapI RAATTY 1 cut(s) 780
XceI RCATGY 3 cut(s) 177, 246, 763
XspI CTAG 3 cut(s) 383, 402, 698
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.