Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

48876449 .. 48880153

Gene Structure 3705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG428200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGTCATCTGGGAGTGTCCAAATCTTAAATCCTTACCTGAGGGCATGTTTCACCTCACCAACCTTCGGTCTTTGATGATTGCAGGGTGTGAAAGTCTTGTTTCGTTCCCACTGAATGTGAGTGTCAGTGGGAGTGGGAGTTTGTCATTGCTAAGAAGAGCCACCTCCAAACTGAGAAACATCTTGATCCTTGACTGTCACAAAGTGGAGGTGGTAACCATGCTTAGAGAGATGCACAATAATCTCAACTCTCTTTGGGACTTGACAATTGATTACTGTGAAGGTTTGCCTTCCTTTCTAGAAGCACAAAAAGAGGATTTTTCGCCCAACCTAACGTCTCTAACAATTTTGAAGGTCCGTAGTTGTAAGGCACTCTTGGAATCTCAAGGGTTGCACAGACTCACATCTCTAAGGAAGTTGTGGATCAGGGGTGAAAATGATCCTGATCTGTTGTTCTTTCCACCAGATGCTGAGAATGAGATGCTGCTCCCTAAGTCTCTCATTAAACTCCTCATTCAAGGCTTCCCAAATCTCAAGAAACTGAGCAAAGGCTTTCAATTTCTCACCTCTCTTAAATCTCTGTCAATAATCGAATGTCCAAAGCTAGCATCCATTCCAGAGGAGGGGCTGCCTCTTTCGCTTACGCATCTTAAGATTGCTGGGAGTCCTCTACTTGAAGAGAAATGCAAAGCAGGCAGTAAAGGACAATACTGGCCCAAAATATCCCACATCCCTTGCATAGATGTTCATGAGCAGGAGGCATTGGGATATAAGAGAGAATTCATCTTCAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

265

Amino Acids

29.77

Weight (kDa)

8.08

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	181, 431, 434
AcsI	RAATTY	1 cut(s)	779
AcuI	CTGAAG	1 cut(s)	772
AdeI	CACNNNGTG	1 cut(s)	205
AfiI	CCNNNNNNNGG	2 cut(s)	66, 623
AflII	CTTAAG	1 cut(s)	650
AgsI	TTSAA	4 cut(s)	352, 518, 557, 677
AluBI	AGCT	1 cut(s)	604
AluI	AGCT	1 cut(s)	604
Alw26I	GTCTC	2 cut(s)	342, 501
AlwI	GGATC	3 cut(s)	181, 431, 434
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	713
ApeKI	GCWGC	2 cut(s)	484, 628
ApoI	RAATTY	1 cut(s)	779
AspS9I	GGNCC	2 cut(s)	355, 714
AsuHPI	GGTGA	4 cut(s)	44, 49, 443, 556
AsuNHI	GCTAGC	1 cut(s)	604
AvaII	GGWCC	1 cut(s)	355
AxyI	CCTNAGG	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	471, 615
BcoDI	GTCTC	2 cut(s)	342, 501
BfaI	CTAG	2 cut(s)	299, 605
BfrI	CTTAAG	1 cut(s)	650
BisI	GCNGC	2 cut(s)	485, 629
BlsI	GCNGC	2 cut(s)	486, 630
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	355, 714
BmsI	GCATC	5 cut(s)	222, 457, 471, 617, 655
BmtI	GCTAGC	1 cut(s)	608
BpuEI	CTTGAG	2 cut(s)	369, 518
BsaBI	GATNNNNATC	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 623
Bse1I	ACTGG	1 cut(s)	716
Bse21I	CCTNAGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	444
BseGI	GGATG	2 cut(s)	608, 729
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	66, 623
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	4 cut(s)	30, 164, 462, 533
BseNI	ACTGG	1 cut(s)	716
BseRI	GAGGAG	2 cut(s)	500, 635
BseXI	GCAGC	2 cut(s)	471, 615
BseYI	CCCAGC	1 cut(s)	659
BshFI	GGCC	1 cut(s)	715
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	66, 623
BsmAI	GTCTC	2 cut(s)	342, 501
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	715
Bsp143I	GATC	4 cut(s)	186, 423, 439, 445
BspANI	GGCC	1 cut(s)	715
BspCNI	CTCAG	4 cut(s)	31, 165, 463, 534
BspHI	TCATGA	1 cut(s)	748
BspOI	GCTAGC	1 cut(s)	608
BspPI	GGATC	3 cut(s)	181, 431, 434
BspQI	GCTCTTC	1 cut(s)	151
BspTI	CTTAAG	1 cut(s)	650
BsrDI	GCAATG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	716
BssMI	GATC	4 cut(s)	186, 423, 439, 445
Bst4CI	ACNGT	2 cut(s)	197, 278
Bst6I	CTCTTC	2 cut(s)	151, 672
BstAFI	CTTAAG	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	606, 694
BstDEI	CTNAG	8 cut(s)	39, 152, 173, 224, 410, 471, 492, 542
BstEII	GGTNACC	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	608, 729
BstKTI	GATC	4 cut(s)	189, 426, 442, 448
BstMAI	GTCTC	2 cut(s)	342, 501
BstMBI	GATC	4 cut(s)	186, 423, 439, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	637, 693
BstNSI	RCATGY	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	471, 615
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	608, 729
BtsIMutI	CAGTG	2 cut(s)	110, 133
Cac8I	GCNNGC	2 cut(s)	606, 694
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	748
Cfr13I	GGNCC	2 cut(s)	355, 714
CspCI	CAANNNNNGTGG	2 cut(s)	716, 751
CviAII	CATG	3 cut(s)	46, 220, 749
CviJI	RGCY	6 cut(s)	161, 522, 552, 604, 628, 715
CviKI_1	RGCY	6 cut(s)	161, 522, 552, 604, 628, 715
DdeI	CTNAG	8 cut(s)	39, 152, 173, 224, 410, 471, 492, 542
DpnI	GATC	4 cut(s)	188, 425, 441, 447
DpnII	GATC	4 cut(s)	186, 423, 439, 445
DraIII	CACNNNGTG	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	151, 672
EarI	CTCTTC	2 cut(s)	151, 672
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	772
Eco81I	CCTNAGG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	779
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	3 cut(s)	49, 223, 752
FaiI	YATR	5 cut(s)	47, 221, 740, 750, 771
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	45, 219, 748
Fnu4HI	GCNGC	2 cut(s)	485, 629
FokI	GGATG	2 cut(s)	595, 716
Fsp4HI	GCNGC	2 cut(s)	485, 629
FspBI	CTAG	2 cut(s)	299, 605
GluI	GCNGC	2 cut(s)	485, 629
GsaI	CCCAGC	1 cut(s)	663
HaeIII	GGCC	1 cut(s)	715
Hin1II	CATG	3 cut(s)	49, 223, 752
HinfI	GANTC	3 cut(s)	380, 399, 664
HphI	GGTGA	4 cut(s)	44, 49, 443, 556
Hpy188III	TCNNGA	7 cut(s)	184, 299, 443, 535, 617, 749, 795
HpyAV	CCTTC	4 cut(s)	74, 275, 300, 346
HpyCH4III	ACNGT	2 cut(s)	197, 278
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	5 cut(s)	83, 235, 394, 687, 738
HpyF10VI	GCNNNNNNNGC	2 cut(s)	637, 693
HpyF3I	CTNAG	8 cut(s)	39, 152, 173, 224, 410, 471, 492, 542
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	3 cut(s)	49, 223, 752
Kzo9I	GATC	4 cut(s)	186, 423, 439, 445
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	492
Lsp1109I	GCAGC	2 cut(s)	471, 615
LweI	GCATC	5 cut(s)	222, 457, 471, 617, 655
MaeI	CTAG	2 cut(s)	299, 605
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	197, 214
MalI	GATC	4 cut(s)	188, 425, 441, 447
MboI	GATC	4 cut(s)	186, 423, 439, 445
MboII	GAAGA	3 cut(s)	168, 689, 778
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	4 cut(s)	267, 345, 557, 779
MlyI	GAGTC	2 cut(s)	393, 673
MseI	TTAA	4 cut(s)	27, 504, 573, 651
MspCI	CTTAAG	1 cut(s)	650
MunI	CAATTG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	637, 693
NdeII	GATC	4 cut(s)	186, 423, 439, 445
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	3 cut(s)	49, 223, 752
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	1 cut(s)	748
PciSI	GCTCTTC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	486, 630
PleI	GAGTC	2 cut(s)	393, 672
PpsI	GAGTC	2 cut(s)	393, 672
PspEI	GGTNACC	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	659
PspPI	GGNCC	2 cut(s)	355, 714
PstNI	CAGNNNCTG	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	4 cut(s)	27, 504, 573, 651
SatI	GCNGC	2 cut(s)	485, 629
Sau3AI	GATC	4 cut(s)	186, 423, 439, 445
Sau96I	GGNCC	2 cut(s)	355, 714
SchI	GAGTC	2 cut(s)	393, 673
SfaNI	GCATC	5 cut(s)	222, 457, 471, 617, 655
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	3 cut(s)	384, 533, 650
SmoI	CTYRAG	3 cut(s)	384, 533, 650
Sse9I	AATT	4 cut(s)	267, 345, 557, 779
SspMI	CTAG	2 cut(s)	299, 605
TaaI	ACNGT	2 cut(s)	197, 278
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	1 cut(s)	591
TaqII	GACCGA	1 cut(s)	57
TasI	AATT	4 cut(s)	267, 345, 557, 779
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	4 cut(s)	27, 504, 573, 651
Tru9I	TTAA	4 cut(s)	27, 504, 573, 651
TscAI	CASTG	2 cut(s)	117, 133
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	484, 628
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	737, 772
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	2 cut(s)	117, 133
Vha464I	CTTAAG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	779
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	2 cut(s)	299, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.