FvH4_7g06280

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001235
Physical Location & Seq
Reverse (-)
6375258 .. 6381680
6423 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06280.t1

Sequence Viewer

Length: 1362 bp
ATGGCTGTCGATAATTCCACTTTCGAGACGATAAACCCATCTGCTTTCACCACTTTCACTTTCCCCAACCCTTCCCCCTCCGCCGCCGCATCTCTCCTCCGCGTTGCCGTCCTCGACTCGCCTCTCCAACCCGCCGCCGACCCACCCCGAGTCGCCGCAATGCTCGTCCCCAAACACCGCCACTCCGACTGGATATTCTCCACCCTCTCCGGCCATCTCCAGCTCCTCTCCTCCTCCCCCGCCTTCTCCCGCCTTATTCTCGTCGGCGACAGCTCCCCCCACTCGCCGCCTATCTACCGCCGTCCCCTCAAAGACGACGACGAAGAACTCGGGGTGAGCCTCCAACCTCTCTTTCTTGCCTTGTCTCCCAAATCTTGCTTTAAACACGGCATTCCTGAGGTACCCATTTTGAGATACCAAGATAATCTGATTTCTAGTGTGGTTTTGGAGATATGTGATGGGCCTTTTGTTGGTGAAATGGTGGTGGAGGATGTCGAGATTGGTTGCGGCGGTGAGGCTTCGAAGAGGGAGTTCAGGAGGCGTTTGAGGTTTAAAAGAATGCCCAATTTGGTCCAGACTGAGGTTCGTATTGTTCCCAAAATGGGGTTTGGTTTGGATTGTGTGGGAATTGGACAAGTTGAGTTTAGGCTAGATGATAGTGTTTTAGTGCATTCTTATCTGGTTCCTATGGTGGCAAGTCTTAGCCTGGCTGCTCCTTATATTGAGGGAAGGATTCGAAGTGGGGCAAGGCCAAAAGCTTTGTGTTTAGGAGTTGGGGGTGGGGCCTTGCTTGGGTTCTTGAGAACCCAGTTGGGTTTTCAGGTTGAGGGTGTGGAAGCCGATGAGGAGGTGCTAAGGGTTTCTAGGCAGTATTTTGGACTGGAAGATGGTGAGCACATCAATGTTCATGTTGGAGATGCATTGGAAGTTATAGATAAGCTGGCTGGTGCTTGTCAGGTAGAGGAAGGTTGTGATGTGGGCAGTGGCAATGATGTTGATACTAAATTTGATGTGATTATGGTTGATTTGGATTCAAGTGATGCTAGGGACGGTCTAATTGCTCCGCCATTGGAGTTTGTTAGGAAGCATGTCCTTTTGTCGGCCAGATCAATTCTCTCTGATCATGGAATCCTAGCTGTAAATGTCATTCCTCCAAATACATCTTTTTACAAGACATTGATCCATACATTTGAAGATGTTTTTAATGAGTTATACGAAATAGACGTGGGAAATGGGGAAAATTTTATTCTTGTTGCTGTTGCATCTCCTCTAATGCCTCCCAGTGATCGTGAGAACTGTTTCCTCAACAGACTAGGAAAAGCTATATCCGGGGTGTACTTGAATTCAATAAAGAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

454

Amino Acids

49.36

Weight (kDa)

5.12

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 400
AccB1I GGYRCC 1 cut(s) 400
AccII CGCG 1 cut(s) 102
AclWI GGATC 1 cut(s) 1174
AcoI YGGCCR 2 cut(s) 211, 1101
AcsI RAATTY 3 cut(s) 1004, 1240, 1342
AfaI GTAC 2 cut(s) 402, 1337
AfiI CCNNNNNNNGG 6 cut(s) 470, 580, 602, 603, 792, 1099
AgsI TTSAA 4 cut(s) 1035, 1193, 1342, 1347
AjiI CACGTC 1 cut(s) 1225
AjnI CCWGG 1 cut(s) 705
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 6 cut(s) 223, 273, 758, 940, 1136, 1322
AluI AGCT 6 cut(s) 223, 273, 758, 940, 1136, 1322
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 2 cut(s) 20, 369
AlwI GGATC 1 cut(s) 1174
Ama87I CYCGRG 2 cut(s) 147, 329
AoxI GGCC 5 cut(s) 211, 461, 749, 783, 1101
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 3 cut(s) 1004, 1240, 1342
Asp700I GAANNNNTTC 1 cut(s) 1298
Asp718I GGTACC 1 cut(s) 400
AspS9I GGNCC 3 cut(s) 461, 571, 783
AsuC2I CCSGG 1 cut(s) 1330
AsuHPI GGTGA 5 cut(s) 40, 346, 485, 524, 902
AsuII TTCGAA 2 cut(s) 521, 736
AvaI CYCGRG 2 cut(s) 147, 329
AvaII GGWCC 1 cut(s) 571
AxyI CCTNAGG 1 cut(s) 396
BanI GGYRCC 1 cut(s) 400
Bbv12I GWGCWC 1 cut(s) 897
BbvI GCAGC 1 cut(s) 697
BccI CCATC 4 cut(s) 46, 222, 452, 881
BceAI ACGGC 3 cut(s) 92, 285, 403
BciT130I CCWGG 1 cut(s) 707
BclI TGATCA 1 cut(s) 1120
BcnI CCSGG 1 cut(s) 1330
BcoDI GTCTC 2 cut(s) 20, 369
BfaI CTAG 6 cut(s) 435, 650, 864, 1044, 1133, 1313
BglII AGATCT 1 cut(s) 1356
BisI GCNGC 7 cut(s) 84, 87, 135, 156, 287, 508, 711
BlsI GCNGC 7 cut(s) 85, 88, 136, 157, 288, 509, 712
Bme1390I CCNGG 2 cut(s) 707, 1330
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 2 cut(s) 147, 329
BmgBI CACGTC 1 cut(s) 1225
BmgT120I GGNCC 3 cut(s) 461, 571, 783
BmiI GGNNCC 3 cut(s) 402, 684, 784
BmrFI CCNGG 2 cut(s) 707, 1330
BmrI ACTGGG 2 cut(s) 802, 1275
BmsI GCATC 4 cut(s) 98, 907, 1030, 1271
BmuI ACTGGG 2 cut(s) 802, 1275
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 854
Bpu14I TTCGAA 2 cut(s) 521, 736
BpuEI CTTGAG 1 cut(s) 820
BpuMI CCSGG 1 cut(s) 1330
BsaJI CCNNGG 1 cut(s) 1329
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 6 cut(s) 470, 580, 602, 603, 792, 1099
Bse1I ACTGG 4 cut(s) 194, 808, 885, 1281
Bse21I CCTNAGG 1 cut(s) 396
Bse3DI GCAATG 2 cut(s) 165, 994
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 1 cut(s) 1329
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 6 cut(s) 470, 580, 602, 603, 792, 1099
BseMI GCAATG 2 cut(s) 165, 994
BseMII CTCAG 2 cut(s) 387, 570
BseNI ACTGG 4 cut(s) 194, 808, 885, 1281
BseRI GAGGAG 6 cut(s) 86, 215, 220, 223, 860, 1257
BseXI GCAGC 1 cut(s) 697
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 5 cut(s) 213, 463, 751, 785, 1103
BshNI GGYRCC 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 897
BsiHKCI CYCGRG 2 cut(s) 147, 329
BsiSI CCGG 2 cut(s) 210, 1329
BslFI GGGAC 3 cut(s) 152, 288, 1061
BslI CCNNNNNNNGG 6 cut(s) 470, 580, 602, 603, 792, 1099
BsmAI GTCTC 2 cut(s) 20, 369
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 3 cut(s) 152, 288, 1061
BsmI GAATGC 3 cut(s) 390, 564, 670
BsnI GGCC 5 cut(s) 213, 463, 751, 785, 1103
BsoBI CYCGRG 2 cut(s) 147, 329
Bsp119I TTCGAA 2 cut(s) 521, 736
Bsp1286I GDGCHC 1 cut(s) 897
Bsp143I GATC 5 cut(s) 1106, 1120, 1179, 1285, 1356
BspANI GGCC 5 cut(s) 213, 463, 751, 785, 1103
BspCNI CTCAG 2 cut(s) 388, 571
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 3 cut(s) 402, 684, 784
BspPI GGATC 1 cut(s) 1174
BspT104I TTCGAA 2 cut(s) 521, 736
BspT107I GGYRCC 1 cut(s) 400
BsrDI GCAATG 2 cut(s) 165, 994
BsrI ACTGG 4 cut(s) 194, 808, 885, 1281
BssECI CCNNGG 1 cut(s) 1329
BssMI GATC 5 cut(s) 1106, 1120, 1179, 1285, 1356
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 2 cut(s) 1052, 1298
Bst6I CTCTTC 1 cut(s) 518
BstBI TTCGAA 2 cut(s) 521, 736
BstC8I GCNNGC 1 cut(s) 942
BstDEI CTNAG 4 cut(s) 396, 579, 701, 854
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 5 cut(s) 1109, 1123, 1182, 1288, 1359
BstMAI GTCTC 2 cut(s) 20, 369
BstMBI GATC 5 cut(s) 1106, 1120, 1179, 1285, 1356
BstNI CCWGG 1 cut(s) 707
BstNSI RCATGY 1 cut(s) 1091
BstSCI CCNGG 2 cut(s) 705, 1328
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 697
BstX2I RGATCY 1 cut(s) 1356
BstYI RGATCY 1 cut(s) 1356
Bsu36I CCTNAGG 1 cut(s) 396
BsuRI GGCC 5 cut(s) 213, 463, 751, 785, 1103
BtrI CACGTC 1 cut(s) 1225
BtsCI GGATG 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 988
BtsIMutI CAGTG 2 cut(s) 988, 1288
Cac8I GCNNGC 1 cut(s) 942
Cfr13I GGNCC 3 cut(s) 461, 571, 783
Csp6I GTAC 2 cut(s) 401, 1336
CviAII CATG 3 cut(s) 908, 1088, 1124
CviQI GTAC 2 cut(s) 401, 1336
DdeI CTNAG 4 cut(s) 396, 579, 701, 854
DpnI GATC 5 cut(s) 1108, 1122, 1181, 1287, 1358
DpnII GATC 5 cut(s) 1106, 1120, 1179, 1285, 1356
DraI TTTAAA 2 cut(s) 382, 553
EaeI YGGCCR 2 cut(s) 211, 1101
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
EciI GGCGGA 2 cut(s) 70, 1053
Eco47I GGWCC 1 cut(s) 571
Eco81I CCTNAGG 1 cut(s) 396
Eco88I CYCGRG 2 cut(s) 147, 329
EcoO109I RGGNCCY 1 cut(s) 783
EcoRI GAATTC 1 cut(s) 1342
EcoRII CCWGG 1 cut(s) 705
EcoT22I ATGCAT 1 cut(s) 922
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 3 cut(s) 911, 1091, 1127
FaqI GGGAC 3 cut(s) 152, 288, 1061
FatI CATG 3 cut(s) 907, 1087, 1123
FauI CCCGC 3 cut(s) 139, 247, 257
FbaI TGATCA 1 cut(s) 1120
Fnu4HI GCNGC 7 cut(s) 84, 87, 135, 156, 287, 508, 711
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 7 cut(s) 84, 87, 135, 156, 287, 508, 711
FspBI CTAG 6 cut(s) 435, 650, 864, 1044, 1133, 1313
GluI GCNGC 7 cut(s) 84, 87, 135, 156, 287, 508, 711
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 5 cut(s) 213, 463, 751, 785, 1103
HapII CCGG 2 cut(s) 210, 1329
Hin1II CATG 3 cut(s) 911, 1091, 1127
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 5 cut(s) 116, 150, 733, 1031, 1128
HpaII CCGG 2 cut(s) 210, 1329
HphI GGTGA 5 cut(s) 40, 346, 485, 524, 902
Hpy166II GTNNAC 1 cut(s) 1336
Hpy188I TCNGA 3 cut(s) 187, 429, 1120
Hpy188III TCNNGA 7 cut(s) 25, 395, 496, 535, 574, 799, 1289
Hpy8I GTNNAC 1 cut(s) 1336
Hpy99I CGWCG 3 cut(s) 266, 320, 323
HpyAV CCTTC 4 cut(s) 81, 253, 723, 959
HpyCH4III ACNGT 2 cut(s) 1052, 1298
HpyCH4IV ACGT 1 cut(s) 1224
HpyCH4V TGCA 3 cut(s) 670, 920, 1262
HpyF3I CTNAG 4 cut(s) 396, 579, 701, 854
HpySE526I ACGT 1 cut(s) 1224
Hsp92II CATG 3 cut(s) 911, 1091, 1127
KpnI GGTACC 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 5 cut(s) 1106, 1120, 1179, 1285, 1356
LmnI GCTCC 4 cut(s) 228, 278, 718, 1066
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 4 cut(s) 98, 907, 1030, 1271
MaeI CTAG 6 cut(s) 435, 650, 864, 1044, 1133, 1313
MaeII ACGT 1 cut(s) 1224
MalI GATC 5 cut(s) 1108, 1122, 1181, 1287, 1358
MboI GATC 5 cut(s) 1106, 1120, 1179, 1285, 1356
MboII GAAGA 4 cut(s) 335, 535, 896, 1205
MflI RGATCY 1 cut(s) 1356
MhlI GDGCHC 1 cut(s) 897
MluCI AATT 8 cut(s) 13, 565, 627, 1004, 1056, 1110, 1240, 1342
MlyI GAGTC 2 cut(s) 110, 159
MmeI TCCRAC 4 cut(s) 151, 210, 367, 892
Mph1103I ATGCAT 1 cut(s) 922
MroXI GAANNNNTTC 1 cut(s) 1298
MseI TTAA 3 cut(s) 381, 552, 1203
MslI CAYNNNNRTG 1 cut(s) 900
MspI CCGG 2 cut(s) 210, 1329
MspR9I CCNGG 2 cut(s) 707, 1330
Mva1269I GAATGC 3 cut(s) 390, 564, 670
MvaI CCWGG 1 cut(s) 707
MvnI CGCG 1 cut(s) 102
NciI CCSGG 1 cut(s) 1330
NdeII GATC 5 cut(s) 1106, 1120, 1179, 1285, 1356
NlaIII CATG 3 cut(s) 911, 1091, 1127
NlaIV GGNNCC 3 cut(s) 402, 684, 784
NsiI ATGCAT 1 cut(s) 922
NspI RCATGY 1 cut(s) 1091
NspV TTCGAA 2 cut(s) 521, 736
PcsI WCGNNNNNNNCGW 1 cut(s) 1221
PctI GAATGC 3 cut(s) 390, 564, 670
PdmI GAANNNNTTC 1 cut(s) 1298
PfeI GAWTC 3 cut(s) 733, 1031, 1128
PkrI GCNGC 7 cut(s) 85, 88, 136, 157, 288, 509, 712
PleI GAGTC 2 cut(s) 110, 158
PpsI GAGTC 2 cut(s) 110, 158
Psp6I CCWGG 1 cut(s) 705
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 3 cut(s) 402, 684, 784
PspPI GGNCC 3 cut(s) 461, 571, 783
PsuI RGATCY 1 cut(s) 1356
RsaI GTAC 2 cut(s) 402, 1337
RsaNI GTAC 2 cut(s) 401, 1336
RseI CAYNNNNRTG 1 cut(s) 900
SaqAI TTAA 3 cut(s) 381, 552, 1203
SatI GCNGC 7 cut(s) 84, 87, 135, 156, 287, 508, 711
Sau3AI GATC 5 cut(s) 1106, 1120, 1179, 1285, 1356
Sau96I GGNCC 3 cut(s) 461, 571, 783
SchI GAGTC 2 cut(s) 110, 159
ScrFI CCNGG 2 cut(s) 707, 1330
SduI GDGCHC 1 cut(s) 897
SfaNI GCATC 4 cut(s) 98, 907, 1030, 1271
SfuI TTCGAA 2 cut(s) 521, 736
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 1 cut(s) 799
SmoI CTYRAG 1 cut(s) 799
Sse9I AATT 8 cut(s) 13, 565, 627, 1004, 1056, 1110, 1240, 1342
SspMI CTAG 6 cut(s) 435, 650, 864, 1044, 1133, 1313
StyD4I CCNGG 2 cut(s) 705, 1328
TaaI ACNGT 2 cut(s) 1052, 1298
TaiI ACGT 1 cut(s) 1227
TaqI TCGA 6 cut(s) 9, 24, 114, 495, 521, 736
TasI AATT 8 cut(s) 13, 565, 627, 1004, 1056, 1110, 1240, 1342
TatI WGTACW 1 cut(s) 1335
TauI GCSGC 6 cut(s) 86, 89, 137, 158, 289, 510
TfiI GAWTC 3 cut(s) 733, 1031, 1128
Tru1I TTAA 3 cut(s) 381, 552, 1203
Tru9I TTAA 3 cut(s) 381, 552, 1203
TscAI CASTG 2 cut(s) 988, 1288
TseI GCWGC 1 cut(s) 710
TspDTI ATGAA 1 cut(s) 896
TspRI CASTG 2 cut(s) 988, 1288
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 3 cut(s) 1004, 1240, 1342
XceI RCATGY 1 cut(s) 1091
XmnI GAANNNNTTC 1 cut(s) 1298
XspI CTAG 6 cut(s) 435, 650, 864, 1044, 1133, 1313
Zsp2I ATGCAT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.