Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8320637.1

Orthogroup ID

OG0001235

Physical Location & Seq

Genomic Coordinates Forward (+)

81 .. 946

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8320637.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 866 bp

atggctatccttgatgagacgactttcgaaatgataaacccatctcgtttcactaccttcactttcccaaacccttgcgtctccaccaccaccgcactcctccacgtcgccgttctcgactcgcctttccaaccccccgccgacccaccccgagtcgccgcaatgctcgtccccaaacaccgccactccgactggatattctccacccactccggccatctccacctcctcctcagctcccccggcatctcccgcctgatcctcatcggcgacagctctcaccactcgcctccaatctaccgccgtccgctcaaaaacgacgacacgtcgtgtgacgacgaactcgcggtgagcttgaaacctctcttccttgctttatctcccaagtcctgctttaaacacggcattcctgagatacccattttgagttatgaagataatttgatttctagtgtggttttggagaaatgcgttgggtgtttggttggtgaaatggtggtggaggatgtggagattgagtgtggtggtgaggtttcaacgagggagttcaggaggcgtttgaggtttaaaagaatgcccaatttgattcagacggaggtgcgtattgttcccaaaatgggttttggtatggattgtgtgggaattggacaagttgagtttaggctagatgatagtgttttagtgcactcttatttggttcctatggtggcaagtcttagcctggctgcttcttacattgacggacagattcaaagtggggtaaggccaaaagctttgtgtctaggagttgggggtggggctttgcttggtttcttgagaaccctattgggttttcaggttgtgggtgtggaagccgatgaggaggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synth

Protein Analysis

289

Amino Acids

31.66

Weight (kDa)

5.67

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04610
fragaria_vesca	FvH4_7g06280 FvH4_7g06280 FvH4_7g06280 FvH4_7g06281
malus_domestica	MD07G1071500.v1.1
prunus_persica	Prupe.2G089200_v2.0.a1 Prupe.2G089200_v2.0.a1 Prupe.2G089200_v2.0.a1 Prupe.2G089200_v2.0.a1
pyrus_communis	pycom07g05430
rosa_chinensis	RchiOBHm_Chr1g0333841 RchiOBHm_Chr1g0333901 RchiOBHm_Chr1g0334121 RchiOBHm_Chr1g0335101 RchiOBHm_Chr1g0335121
rosa_laevigata	RLG00000029395 RLG00000029401 RLG00000029478 RLG00000029481
rosa_multiflora	Rmu_co8244035.1_g000001 Rmu_co8320637.1_g000001 Rmu_sc0000115.1_g000006 Rmu_sc0002722.1_g000007 Rmu_sc0003690.1_g000023 Rmu_sc0006326.1_g000025 Rmu_sc0006746.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028300 Rroxscaffold_4G00317000 Rroxscaffold_4G00317130 Rroxscaffold_5G00352360 Rroxscaffold_7G00185410
rosa_rugosa	Rorug01G0112400 Rorug01G0112700 Rorug01G0119900 Rorug01G0129700
rosa_samantha	Rh1AG136100 Rh1AG136200 Rh1AG136800 Rh1AG141900 Rh1BG104100 Rh1BG110400 Rh1BG110500 Rh1BG110800 Rh1BG110900 Rh1CG128500 Rh1CG128700 Rh1CG129000 Rh1CG133800 Rh1DG141300 Rh1DG141600 Rh1DG141800 Rh1DG158000
rosa_wichuraiana	Rw0G013970 Rw0G021360 Rw1G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	310
AccII	CGCG	1 cut(s)	347
AciI	CCGC	8 cut(s)	93, 138, 159, 181, 253, 301, 308, 347
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	214
AdeI	CACNNNGTG	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	617
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	358, 537, 752
AhdI	GACNNNNNGTC	1 cut(s)	325
AjiI	CACGTC	2 cut(s)	106, 327
AjnI	CCWGG	1 cut(s)	720
AluBI	AGCT	4 cut(s)	237, 276, 354, 773
AluI	AGCT	4 cut(s)	237, 276, 354, 773
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	2 cut(s)	11, 85
Alw44I	GTGCAC	1 cut(s)	683
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	2 cut(s)	214, 764
ApaLI	GTGCAC	1 cut(s)	683
ApeKI	GCWGC	1 cut(s)	725
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	4 cut(s)	272, 361, 500, 539
AsuII	TTCGAA	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	687
BbvCI	CCTCAGC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	2 cut(s)	49, 225
BceAI	ACGGC	3 cut(s)	95, 288, 418
BciT130I	CCWGG	1 cut(s)	722
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	11, 85
BfaI	CTAG	3 cut(s)	450, 665, 782
BisI	GCNGC	2 cut(s)	159, 726
BlsI	GCNGC	2 cut(s)	160, 727
Bme1390I	CCNGG	2 cut(s)	243, 722
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	150
BmgBI	CACGTC	2 cut(s)	106, 327
BmiI	GGNNCC	1 cut(s)	699
BmrFI	CCNGG	2 cut(s)	243, 722
BmsI	GCATC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	835
BpuMI	CCSGG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	511
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	247, 402
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	3 cut(s)	89, 218, 221
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	1 cut(s)	712
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	216, 766
BsiHKAI	GWGCWC	1 cut(s)	687
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	213, 243
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	2 cut(s)	11, 85
BsmBI	CGTCTC	2 cut(s)	11, 85
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	2 cut(s)	405, 579
BsnI	GGCC	2 cut(s)	216, 766
BsoBI	CYCGRG	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	8 cut(s)	93, 138, 159, 181, 253, 301, 308, 347
BspANI	GGCC	2 cut(s)	216, 766
BspCNI	CTCAG	2 cut(s)	246, 403
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	722
Bst6I	CTCTTC	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	233, 411, 716
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	2 cut(s)	11, 85
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	2 cut(s)	243, 252
BstNI	CCWGG	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	241, 720
BstSLI	GKGCMC	1 cut(s)	687
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	712
BsuRI	GGCC	2 cut(s)	216, 766
BtrI	CACGTC	2 cut(s)	106, 327
BtsCI	GGATG	1 cut(s)	511
CseI	GACGC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	233, 411, 716
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DraI	TTTAAA	2 cut(s)	397, 568
DraIII	CACNNNGTG	1 cut(s)	330
DriI	GACNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	371
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	720
Esp3I	CGTCTC	2 cut(s)	11, 85
FaiI	YATR	3 cut(s)	432, 629, 704
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	155
FauI	CCCGC	2 cut(s)	145, 260
Fnu4HI	GCNGC	2 cut(s)	159, 726
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	2 cut(s)	159, 726
FspBI	CTAG	3 cut(s)	450, 665, 782
GluI	GCNGC	2 cut(s)	159, 726
HaeIII	GGCC	2 cut(s)	216, 766
HapII	CCGG	2 cut(s)	213, 243
HgaI	GACGC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	4 cut(s)	119, 153, 586, 748
HpaII	CCGG	2 cut(s)	213, 243
HphI	GGTGA	4 cut(s)	272, 361, 500, 539
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	2 cut(s)	190, 591
Hpy188III	TCNNGA	4 cut(s)	116, 410, 550, 814
Hpy8I	GTNNAC	1 cut(s)	685
Hpy99I	CGWCG	4 cut(s)	110, 323, 331, 341
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	105, 326
HpyCH4V	TGCA	1 cut(s)	685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	243, 252
HpyF3I	CTNAG	3 cut(s)	233, 411, 716
HpySE526I	ACGT	2 cut(s)	105, 326
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	3 cut(s)	450, 665, 782
MaeII	ACGT	2 cut(s)	105, 326
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	1 cut(s)	260
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	1 cut(s)	258
MboII	GAAGA	2 cut(s)	358, 446
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	3 cut(s)	439, 580, 642
MlyI	GAGTC	2 cut(s)	113, 162
MmeI	TCCRAC	2 cut(s)	154, 213
MseI	TTAA	2 cut(s)	396, 567
MspI	CCGG	2 cut(s)	213, 243
MspR9I	CCNGG	2 cut(s)	243, 722
Mva1269I	GAATGC	2 cut(s)	405, 579
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	243, 252
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	258
NlaIV	GGNNCC	1 cut(s)	699
NmuCI	GTSAC	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	2 cut(s)	405, 579
PfeI	GAWTC	2 cut(s)	586, 748
PkrI	GCNGC	2 cut(s)	160, 727
PleI	GAGTC	2 cut(s)	113, 161
PpsI	GAGTC	2 cut(s)	113, 161
Psp6I	CCWGG	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	1 cut(s)	699
SaqAI	TTAA	2 cut(s)	396, 567
SatI	GCNGC	2 cut(s)	159, 726
Sau3AI	GATC	1 cut(s)	258
SchI	GAGTC	2 cut(s)	113, 162
ScrFI	CCNGG	2 cut(s)	243, 722
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	814
SmoI	CTYRAG	1 cut(s)	814
Sse9I	AATT	3 cut(s)	439, 580, 642
SsiI	CCGC	8 cut(s)	93, 138, 159, 181, 253, 301, 308, 347
SspMI	CTAG	3 cut(s)	450, 665, 782
StyD4I	CCNGG	2 cut(s)	241, 720
TaiI	ACGT	2 cut(s)	108, 329
TaqI	TCGA	2 cut(s)	27, 117
TasI	AATT	3 cut(s)	439, 580, 642
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	586, 748
Tru1I	TTAA	2 cut(s)	396, 567
Tru9I	TTAA	2 cut(s)	396, 567
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	447
TspGWI	ACGGA	2 cut(s)	608, 756
VneI	GTGCAC	1 cut(s)	683
XspI	CTAG	3 cut(s)	450, 665, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.