RLG00000029401

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001235
Physical Location & Seq
Reverse (-)
38129399 .. 38133935
4537 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029401

Sequence Viewer

Length: 537 bp
ATGGTTGATTTTGTTCTCAAGTCTCAGATTACTGGATTTGCTTCAGGTTCTCCCCTCAGGTCAAGATCTTCAAAAAATGAGAGTACTGCTGAGTCTCTTCTAACTAATACTGTTTCATCTAGATCCAATGTTCCATCTCATTCTGAAAGGTCTCAGATTACTAGATCTGCTTTAGGTTCTCCCCTCAGTTTTAAGGGCATCTCCGACTGGATATTCTCCGCCCACTCCGGCCATCTCCAGCTCCTCCTCAGCTCCCCCGGCATCTCCCGCCTGATCCTTATCGGCGACTGCTCTCACGACTCGCCTCCAATCTACCGCTGTCCGCTCAAAGACGACGACACGTCGTGTGACGACGAACTCGGGGTGAGCTTGAAACCTCTCTTTCTTGCTTTATCTCCCAAGTCCTGCTTTAAACACGGCATTCCTGAGATACCCATTTTGAGATACGAAGATAATTTGATTTCTAGTTTGGTTTTGGAGAAATGCGTTGGGTGTTTGGTTGGAGAAATGGTGGTGGTGACTGGTGAGGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

179

Amino Acids

19.13

Weight (kDa)

5.93

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 325
AciI CCGC 4 cut(s) 219, 268, 316, 323
AclWI GGATC 2 cut(s) 117, 268
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 1 cut(s) 85
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 2 cut(s) 72, 373
AhdI GACNNNNNGTC 1 cut(s) 340
AjiI CACGTC 1 cut(s) 342
AluBI AGCT 3 cut(s) 241, 252, 369
AluI AGCT 3 cut(s) 241, 252, 369
Alw26I GTCTC 3 cut(s) 27, 99, 156
AlwI GGATC 2 cut(s) 117, 268
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 376, 529, 536
AvaI CYCGRG 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 56
BbvCI CCTCAGC 1 cut(s) 248
BccI CCATC 2 cut(s) 142, 240
BceAI ACGGC 1 cut(s) 433
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 3 cut(s) 27, 99, 156
BfaI CTAG 3 cut(s) 120, 162, 465
BglII AGATCT 2 cut(s) 65, 164
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 258
BmeRI GACNNNNNGTC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 359
BmgBI CACGTC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 207, 270
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bse1I ACTGG 3 cut(s) 37, 212, 526
Bse21I CCTNAGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 256
BseJI GATNNNNATC 1 cut(s) 278
BseMII CTCAG 7 cut(s) 38, 70, 81, 167, 199, 262, 417
BseNI ACTGG 3 cut(s) 37, 212, 526
BseRI GAGGAG 2 cut(s) 233, 236
BshFI GGCC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 228, 258
BsmAI GTCTC 3 cut(s) 27, 99, 156
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 1 cut(s) 231
Bso31I GGTCTC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 359
Bsp143I GATC 4 cut(s) 65, 122, 164, 273
BspACI CCGC 4 cut(s) 219, 268, 316, 323
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 7 cut(s) 37, 69, 82, 166, 198, 261, 418
BspPI GGATC 2 cut(s) 117, 268
BspTNI GGTCTC 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 325
BsrI ACTGG 3 cut(s) 37, 212, 526
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 4 cut(s) 65, 122, 164, 273
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 7 cut(s) 24, 56, 90, 153, 185, 248, 426
BstKTI GATC 4 cut(s) 68, 125, 167, 276
BstMAI GTCTC 3 cut(s) 27, 99, 156
BstMBI GATC 4 cut(s) 65, 122, 164, 273
BstMWI GCNNNNNNNGC 2 cut(s) 258, 267
BstSCI CCNGG 1 cut(s) 256
BstX2I RGATCY 3 cut(s) 65, 122, 164
BstYI RGATCY 3 cut(s) 65, 122, 164
Bsu36I CCTNAGG 1 cut(s) 56
BsuRI GGCC 1 cut(s) 231
BtrI CACGTC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 84
CviJI RGCY 4 cut(s) 231, 241, 252, 369
CviKI_1 RGCY 4 cut(s) 231, 241, 252, 369
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 7 cut(s) 24, 56, 90, 153, 185, 248, 426
DpnI GATC 4 cut(s) 67, 124, 166, 275
DpnII GATC 4 cut(s) 65, 122, 164, 273
DraI TTTAAA 1 cut(s) 412
DraIII CACNNNGTG 1 cut(s) 345
DriI GACNNNNNGTC 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 102
Eam1105I GACNNNNNGTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 359
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FauI CCCGC 1 cut(s) 275
FspBI CTAG 3 cut(s) 120, 162, 465
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 231
HapII CCGG 2 cut(s) 228, 258
HinfI GANTC 2 cut(s) 92, 299
HpaII CCGG 2 cut(s) 228, 258
HphI GGTGA 3 cut(s) 376, 529, 536
Hpy188I TCNGA 4 cut(s) 27, 145, 156, 205
Hpy188III TCNNGA 4 cut(s) 63, 120, 296, 425
Hpy99I CGWCG 3 cut(s) 338, 346, 356
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 267
HpyF3I CTNAG 7 cut(s) 24, 56, 90, 153, 185, 248, 426
HpySE526I ACGT 1 cut(s) 341
Kzo9I GATC 4 cut(s) 65, 122, 164, 273
LmnI GCTCC 2 cut(s) 246, 257
LweI GCATC 2 cut(s) 207, 270
MaeI CTAG 3 cut(s) 120, 162, 465
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 2 cut(s) 347, 517
MalI GATC 4 cut(s) 67, 124, 166, 275
MbiI CCGCTC 1 cut(s) 325
MboI GATC 4 cut(s) 65, 122, 164, 273
MboII GAAGA 3 cut(s) 60, 89, 461
MflI RGATCY 3 cut(s) 65, 122, 164
MluCI AATT 1 cut(s) 454
MlyI GAGTC 2 cut(s) 101, 293
MmeI TCCRAC 2 cut(s) 228, 481
MnlI CCTC 7 cut(s) 65, 194, 254, 257, 315, 387, 520
MseI TTAA 2 cut(s) 192, 411
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 2 cut(s) 228, 258
MspR9I CCNGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 420
MwoI GCNNNNNNNGC 2 cut(s) 258, 267
NciI CCSGG 1 cut(s) 258
NdeII GATC 4 cut(s) 65, 122, 164, 273
NmuCI GTSAC 2 cut(s) 347, 517
PctI GAATGC 1 cut(s) 420
PleI GAGTC 2 cut(s) 100, 293
PpsI GAGTC 2 cut(s) 100, 293
PsuI RGATCY 3 cut(s) 65, 122, 164
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 192, 411
Sau3AI GATC 4 cut(s) 65, 122, 164, 273
ScaI AGTACT 1 cut(s) 85
SchI GAGTC 2 cut(s) 101, 293
ScrFI CCNGG 1 cut(s) 258
SetI ASST 9 cut(s) 49, 62, 152, 178, 243, 254, 344, 371, 379
SfaNI GCATC 2 cut(s) 207, 270
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 1 cut(s) 454
SsiI CCGC 4 cut(s) 219, 268, 316, 323
SspMI CTAG 3 cut(s) 120, 162, 465
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 344
TasI AATT 1 cut(s) 454
TatI WGTACW 1 cut(s) 83
Tru1I TTAA 2 cut(s) 192, 411
Tru9I TTAA 2 cut(s) 192, 411
TseFI GTSAC 2 cut(s) 347, 517
Tsp45I GTSAC 2 cut(s) 347, 517
TspDTI ATGAA 1 cut(s) 105
XbaI TCTAGA 1 cut(s) 119
XspI CTAG 3 cut(s) 120, 162, 465
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.