Rh1BG110800

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001235
Physical Location & Seq
Forward (+)
19024587 .. 19025117
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG110800.1

Sequence Viewer

Length: 531 bp
ATGCGTGGTGAAATGGTGGTGGAGAATGTGGAGATTGACTCTGGTGGTGAGGTTTCAATGAGGGAGTTCAGGAGGCGTTTGAGGTTTGAAAGAATGCCCTATGTGATCCAGACGGAGGTGCGCATTGTTCCCAAAATGGGTTTTGGTTTGGATTGTGTGGGAATTGGACAAGTTGAGTTTAGGCTAGATGATAGTGTTTTAGTGCACTCTTATTTGGTTCCTATGGTGGCAAGTCTTAGCCTGGCTGCTTCTTACATTGACGGACAGATTCGAAGTGGGGTAAGGCCAAAAGCTTTGTGTCTAGGAGTTGGGGGTGGGGCTTTGCTTGGTTTCTTGAAAACCCAATTGGATTTTCAGGTCGTGGGTGTGGAAGCCGATGAAGAGGTGCTAAGGGTTTCTAGGCGGTATTTTGGGCTAGACAATGGGGAGCATATCAAAGTTTGTGTTGGAGATGCATTACAAGTTATTGACAAACTTGCTGGTGCCCGTGAGGTAGAGGTTGGTTGTGACGTGGGCAGTGGTAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

176

Amino Acids

19.23

Weight (kDa)

5.06

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 122
AccB1I GGYRCC 1 cut(s) 482
AciI CCGC 1 cut(s) 403
AclWI GGATC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 115, 137
AgsI TTSAA 3 cut(s) 57, 89, 337
AjiI CACGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 240
AjuI GAANNNNNNNTTGG 4 cut(s) 329, 336, 361, 368
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw21I GWGCWC 1 cut(s) 207
Alw44I GTGCAC 1 cut(s) 203
AlwI GGATC 1 cut(s) 100
AoxI GGCC 1 cut(s) 284
ApaLI GTGCAC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 20, 59
AsuII TTCGAA 1 cut(s) 271
BaeGI GKGCMC 2 cut(s) 207, 487
BanI GGYRCC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 242
BfaI CTAG 4 cut(s) 185, 302, 399, 416
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 242
BmgBI CACGTC 1 cut(s) 511
BmiI GGNNCC 2 cut(s) 219, 484
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 23, 55
Bpu10I CCTNAGC 1 cut(s) 389
Bpu14I TTCGAA 1 cut(s) 271
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 137
BseBI CCWGG 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 115, 137
BseSI GKGCMC 2 cut(s) 207, 487
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 115, 137
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 207, 487
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 1 cut(s) 403
BspANI GGCC 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 219, 484
BspPI GGATC 1 cut(s) 100
BspT104I TTCGAA 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 482
BssMI GATC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 271
BstDEI CTNAG 2 cut(s) 236, 389
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstSLI GKGCMC 2 cut(s) 207, 487
BstV1I GCAGC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 286
BtrI CACGTC 1 cut(s) 511
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 1 cut(s) 523
CfoI GCGC 1 cut(s) 123
CviJI RGCY 8 cut(s) 184, 240, 245, 286, 293, 320, 374, 415
CviKI_1 RGCY 8 cut(s) 184, 240, 245, 286, 293, 320, 374, 415
DdeI CTNAG 2 cut(s) 236, 389
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 457
FaiI YATR 3 cut(s) 102, 224, 432
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
FspAI RTGCGCAY 1 cut(s) 122
FspBI CTAG 4 cut(s) 185, 302, 399, 416
FspI TGCGCA 1 cut(s) 122
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 1 cut(s) 286
HhaI GCGC 1 cut(s) 123
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 38, 268
HphI GGTGA 2 cut(s) 20, 59
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 3 cut(s) 70, 109, 334
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 2 cut(s) 205, 455
HpyF3I CTNAG 2 cut(s) 236, 389
HpySE526I ACGT 1 cut(s) 510
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 7 cut(s) 27, 55, 122, 227, 254, 341, 465
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 442
MaeI CTAG 4 cut(s) 185, 302, 399, 416
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 506
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 392
MfeI CAATTG 1 cut(s) 344
MhlI GDGCHC 2 cut(s) 207, 487
MluCI AATT 2 cut(s) 162, 344
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 8 cut(s) 43, 54, 66, 75, 109, 376, 484, 490
Mph1103I ATGCAT 1 cut(s) 457
MspR9I CCNGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 344
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 1 cut(s) 242
NdeII GATC 1 cut(s) 105
NlaIV GGNNCC 2 cut(s) 219, 484
NmuCI GTSAC 1 cut(s) 506
NsbI TGCGCA 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 457
NspV TTCGAA 1 cut(s) 271
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 219, 484
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 105
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 2 cut(s) 207, 487
SetI ASST 9 cut(s) 54, 86, 120, 295, 360, 387, 495, 501, 513
SfaNI GCATC 1 cut(s) 442
SfuI TTCGAA 1 cut(s) 271
Sse9I AATT 2 cut(s) 162, 344
SsiI CCGC 1 cut(s) 403
SspMI CTAG 4 cut(s) 185, 302, 399, 416
StyD4I CCNGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 513
TaqI TCGA 1 cut(s) 271
TasI AATT 2 cut(s) 162, 344
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 2 cut(s) 128, 276
TspRI CASTG 1 cut(s) 523
VneI GTGCAC 1 cut(s) 203
XspI CTAG 4 cut(s) 185, 302, 399, 416
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.