Rh1AG141900

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001235
Physical Location & Seq
Forward (+)
26835755 .. 26836615
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG141900.1

Sequence Viewer

Length: 861 bp
ATGGCTATCCTCGATAATACCACATTCGAAATCATAAACCCATATCGTTTCATTACCTTGACTTTTCCAAACCCTTCGGACTCCACCACCTCACTCCTCCGCGTCGCCGTTCTCGACTCGCCTTTCCAACTCGCCGGCGACCCACCTCGAGTCGCCGGAATGCTCGTCCCTAAACACCGCCACTCCGACTGGATATTCTCCACCCACTCCGGCCATCTCCAGCTCCTCCTCAGCTCTCCCGGCATCTCCCGCCTAATTCTCATTGGCGACAGCTCTCACGACTCGCCGCCAATCTACCGCCGTCCTCTCAAAGACGACGCGTGGTGTGACGACGAACTCGGTGTGAGCCTGAAACCTCTCTTTCTTGCTTTATCTCCCAAGTCCTGCTTTAAACACGGCATTCCTGAGATACCCATTTTGAGTTACCAAGATAATTTGATTTCTAGTTTGGTTTTGGAGATTTGTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGACTCTGGTGGTGGTGAGGTTTCAAAGAGGGAGTTCAGGAGGCGTTTGAGGTTTGAAAGAATGCCCTATGTGATCCAGACGGAGGTGCGCATTGTTCCCAAAATGGGTTTTGGTTTGGATTGTGTGGGAATTGGACAAGTTGAGTTTAGGCTAGATGATAGTGTTTTAGTGCACTCTTATTTGGTTCCTATGGTCGCAAGTCTTAGCCTGGCTGCTTCTTACATTGACGGACGGATTCGAAGTCGAGTAGGGCCAAAAGCTTTGTGTTTAGGAGTTGGGGGTGGGGCTTTGCTTGGTTTCTTGAAAACCCAATTGGATTTTCAGGTCGTGGGTGTGGAATCCGATGAAGAGGTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

286

Amino Acids

31.53

Weight (kDa)

5.39

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 590
AccII CGCG 2 cut(s) 102, 320
AciI CCGC 5 cut(s) 100, 178, 250, 287, 298
AclWI GGATC 1 cut(s) 568
AcoI YGGCCR 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 583, 605
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 3 cut(s) 525, 557, 805
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 4 cut(s) 797, 804, 829, 836
AluBI AGCT 4 cut(s) 223, 234, 273, 761
AluI AGCT 4 cut(s) 223, 234, 273, 761
Alw21I GWGCWC 2 cut(s) 675, 858
Alw44I GTGCAC 1 cut(s) 671
AlwI GGATC 1 cut(s) 568
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 2 cut(s) 211, 752
ApaLI GTGCAC 1 cut(s) 671
ApeKI GCWGC 1 cut(s) 713
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 1 cut(s) 752
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 485, 527
AsuII TTCGAA 2 cut(s) 27, 739
AvaI CYCGRG 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 675
Bbv12I GWGCWC 2 cut(s) 675, 858
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 700
BccI CCATC 1 cut(s) 222
BceAI ACGGC 3 cut(s) 92, 285, 412
BciT130I CCWGG 1 cut(s) 710
BcnI CCSGG 1 cut(s) 240
BfaI CTAG 3 cut(s) 444, 653, 859
BisI GCNGC 2 cut(s) 287, 714
BlsI GCNGC 2 cut(s) 288, 715
Bme1390I CCNGG 2 cut(s) 240, 710
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 752
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 2 cut(s) 240, 710
BmsI GCATC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 230
Bpu14I TTCGAA 2 cut(s) 27, 739
BpuMI CCSGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 583, 605
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 710
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 2 cut(s) 583, 605
BseMII CTCAG 2 cut(s) 244, 396
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 3 cut(s) 86, 215, 218
BseSI GKGCMC 1 cut(s) 675
BseXI GCAGC 1 cut(s) 700
Bsh1236I CGCG 2 cut(s) 102, 320
BshFI GGCC 2 cut(s) 213, 754
BsiHKAI GWGCWC 2 cut(s) 675, 858
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 4 cut(s) 135, 156, 210, 240
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 583, 605
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 3 cut(s) 165, 399, 567
BsnI GGCC 2 cut(s) 213, 754
BsoBI CYCGRG 1 cut(s) 147
Bsp119I TTCGAA 2 cut(s) 27, 739
Bsp1286I GDGCHC 2 cut(s) 675, 858
Bsp143I GATC 1 cut(s) 573
BspACI CCGC 5 cut(s) 100, 178, 250, 287, 298
BspANI GGCC 2 cut(s) 213, 754
BspCNI CTCAG 2 cut(s) 243, 397
BspFNI CGCG 2 cut(s) 102, 320
BspLI GGNNCC 1 cut(s) 687
BspPI GGATC 1 cut(s) 568
BspT104I TTCGAA 2 cut(s) 27, 739
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 134
BssMI GATC 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 710
Bst6I CTCTTC 1 cut(s) 843
BstBI TTCGAA 2 cut(s) 27, 739
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 230, 405, 704
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 2 cut(s) 102, 320
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 1 cut(s) 576
BstMBI GATC 1 cut(s) 573
BstMWI GCNNNNNNNGC 2 cut(s) 240, 249
BstNI CCWGG 1 cut(s) 710
BstSCI CCNGG 2 cut(s) 238, 708
BstSLI GKGCMC 1 cut(s) 675
BstUI CGCG 2 cut(s) 102, 320
BstV1I GCAGC 1 cut(s) 700
BsuRI GGCC 2 cut(s) 213, 754
BtsCI GGATG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 591
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 752
CseI GACGC 2 cut(s) 91, 326
DdeI CTNAG 3 cut(s) 230, 405, 704
DpnI GATC 1 cut(s) 575
DpnII GATC 1 cut(s) 573
DraI TTTAAA 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 708
FaiI YATR 4 cut(s) 35, 43, 570, 692
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 152
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 287, 714
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 2 cut(s) 287, 714
FspAI RTGCGCAY 1 cut(s) 590
FspBI CTAG 3 cut(s) 444, 653, 859
FspI TGCGCA 1 cut(s) 590
GlaI GCGC 1 cut(s) 590
GluI GCNGC 2 cut(s) 287, 714
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 2 cut(s) 213, 754
HapII CCGG 4 cut(s) 135, 156, 210, 240
HgaI GACGC 2 cut(s) 91, 326
HhaI GCGC 1 cut(s) 591
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 7 cut(s) 80, 116, 150, 281, 503, 736, 839
HpaII CCGG 4 cut(s) 135, 156, 210, 240
HphI GGTGA 2 cut(s) 485, 527
Hpy166II GTNNAC 1 cut(s) 673
Hpy188I TCNGA 3 cut(s) 79, 187, 844
Hpy188III TCNNGA 6 cut(s) 113, 278, 404, 538, 577, 802
Hpy8I GTNNAC 1 cut(s) 673
Hpy99I CGWCG 3 cut(s) 107, 320, 335
HpyAV CCTTC 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 673
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 249
HpyF3I CTNAG 3 cut(s) 230, 405, 704
HspAI GCGC 1 cut(s) 589
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 573
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 1 cut(s) 252
MaeI CTAG 3 cut(s) 444, 653, 859
MaeIII GTNAC 2 cut(s) 326, 422
MalI GATC 1 cut(s) 575
MboI GATC 1 cut(s) 573
MboII GAAGA 1 cut(s) 860
MfeI CAATTG 1 cut(s) 812
MhlI GDGCHC 2 cut(s) 675, 858
MluCI AATT 4 cut(s) 255, 433, 630, 812
MluI ACGCGT 1 cut(s) 318
MlyI GAGTC 5 cut(s) 74, 110, 159, 275, 497
MmeI TCCRAC 2 cut(s) 151, 210
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 1 cut(s) 390
MspI CCGG 4 cut(s) 135, 156, 210, 240
MspR9I CCNGG 2 cut(s) 240, 710
MunI CAATTG 1 cut(s) 812
Mva1269I GAATGC 3 cut(s) 165, 399, 567
MvaI CCWGG 1 cut(s) 710
MvnI CGCG 2 cut(s) 102, 320
MwoI GCNNNNNNNGC 2 cut(s) 240, 249
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 1 cut(s) 240
NdeII GATC 1 cut(s) 573
NgoMIV GCCGGC 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 687
NmuCI GTSAC 1 cut(s) 326
NsbI TGCGCA 1 cut(s) 590
NspV TTCGAA 2 cut(s) 27, 739
PaeR7I CTCGAG 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 3 cut(s) 165, 399, 567
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 736, 839
PkrI GCNGC 2 cut(s) 288, 715
PleI GAGTC 5 cut(s) 74, 110, 158, 275, 497
PpsI GAGTC 5 cut(s) 74, 110, 158, 275, 497
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 1 cut(s) 752
PspXI VCTCGAGB 1 cut(s) 147
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 287, 714
Sau3AI GATC 1 cut(s) 573
Sau96I GGNCC 1 cut(s) 752
SchI GAGTC 5 cut(s) 74, 110, 159, 275, 497
ScrFI CCNGG 2 cut(s) 240, 710
SduI GDGCHC 2 cut(s) 675, 858
SfaNI GCATC 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 147
SfuI TTCGAA 2 cut(s) 27, 739
SgrAI CRCCGGYG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 4 cut(s) 255, 433, 630, 812
SsiI CCGC 5 cut(s) 100, 178, 250, 287, 298
SspMI CTAG 3 cut(s) 444, 653, 859
StyD4I CCNGG 2 cut(s) 238, 708
TaqI TCGA 6 cut(s) 12, 27, 114, 148, 739, 745
TasI AATT 4 cut(s) 255, 433, 630, 812
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 2 cut(s) 736, 839
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 1 cut(s) 713
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 40, 861
TspGWI ACGGA 3 cut(s) 596, 744, 748
VneI GTGCAC 1 cut(s) 671
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 3 cut(s) 444, 653, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.