RLG00000029478

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001235
Physical Location & Seq
Forward (+)
39316689 .. 39321384
4696 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029478

Sequence Viewer

Length: 822 bp
ATGGCTATCCTCGATGAGACGACTTTCGAAATGATAAACCCATCTCGTTTCACTACCTTCACTTTCCCAAACCCTTCCGACTCCACCACCACCTCACTCCTCCGCGTCGCCGTTCTCGACTCTCCTTTCCAACCCCCCGCCGACCCGCCCCGAGTCGCCGCAATACTCGTCCCCAAACACCGCCACTCCGACTGGATATTCTCCACCCACTCCGGCCATCTCCACCTCCTTCTCAGCTCCCCCGGCATCTCCCGCCTAATTCTCATCGGCGACAGCTCTCACCACTCGACCCCAATCTACCGCCGGCCGCTCAAAAACGACACGTCGTGTGACGACGAACTCGCGGTGAGCCTGAAACCTCTCTTCCTTGCTTTATCTCCCAAGTCCTGCTTTAAACACGGCATTCCTGAGATACCCATTTTGAGTTACCAAGATAATTTGATTTCTAGTTTGGTTTTGGAGAAATGCGTTGGGAGTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGACTGTGGTGGTGAGGTTTCAACGAGGGAGTTCAGGAGGCGTTTGAGATTTAAAAGAATGCCCAATTTGATTCAGACGGAGGTGCGTATTGTTCCTAAAATGGGTTTTGGTTTGGATTGTGTAGGAATTGGACAAGTTCAGTTTAGGCTAGATCATAGTGGTTTAGTGCACTCTTATTTGGTTCCTATGGTGGCAAGTCTTAGCCTGGCTGCTCCTTATATTCAGGGACGGATTCAAAGTGGGCAGCATGGGACGGCTGAGAATGGATGGGCTAAGCCACTGTATAAGACAATCTCTCATCCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

274

Amino Acids

30.25

Weight (kDa)

7.22

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 310
AccII CGCG 2 cut(s) 105, 344
AciI CCGC 9 cut(s) 103, 138, 146, 159, 181, 253, 301, 308, 344
AcoI YGGCCR 2 cut(s) 214, 305
AdeI CACNNNGTG 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 614
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 2 cut(s) 534, 749
AjiI CACGTC 1 cut(s) 324
AjnI CCWGG 1 cut(s) 717
AluBI AGCT 2 cut(s) 237, 276
AluI AGCT 2 cut(s) 237, 276
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 1 cut(s) 11
Alw44I GTGCAC 1 cut(s) 680
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 2 cut(s) 214, 305
ApaLI GTGCAC 1 cut(s) 680
ApeKI GCWGC 2 cut(s) 722, 757
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 4 cut(s) 272, 358, 497, 536
AsuII TTCGAA 1 cut(s) 27
AvaI CYCGRG 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 709, 769
BccI CCATC 3 cut(s) 49, 225, 774
BceAI ACGGC 3 cut(s) 95, 415, 783
BciT130I CCWGG 1 cut(s) 719
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 447, 662
BisI GCNGC 4 cut(s) 159, 308, 723, 758
BlpI GCTNAGC 1 cut(s) 786
BlsI GCNGC 4 cut(s) 160, 309, 724, 759
Bme1390I CCNGG 2 cut(s) 243, 719
BmeT110I CYCGRG 1 cut(s) 150
BmgBI CACGTC 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 696
BmrFI CCNGG 2 cut(s) 243, 719
BmsI GCATC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse118I RCCGGY 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 719
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 3 cut(s) 508, 785, 811
BseLI CCNNNNNNNGG 1 cut(s) 614
BseMII CTCAG 3 cut(s) 247, 399, 762
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 684
BseX3I CGGCCG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 709, 769
Bsh1236I CGCG 2 cut(s) 105, 344
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 2 cut(s) 216, 307
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 3 cut(s) 213, 243, 304
BslFI GGGAC 3 cut(s) 155, 753, 778
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 3 cut(s) 155, 753, 778
BsmI GAATGC 2 cut(s) 402, 576
BsnI GGCC 2 cut(s) 216, 307
BsoBI CYCGRG 1 cut(s) 150
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 1 cut(s) 664
Bsp1720I GCTNAGC 1 cut(s) 786
BspACI CCGC 9 cut(s) 103, 138, 146, 159, 181, 253, 301, 308, 344
BspANI GGCC 2 cut(s) 216, 307
BspCNI CTCAG 3 cut(s) 246, 400, 763
BspFNI CGCG 2 cut(s) 105, 344
BspLI GGNNCC 1 cut(s) 696
BspT104I TTCGAA 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 303
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 664
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 2 cut(s) 518, 795
Bst6I CTCTTC 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 5 cut(s) 233, 408, 713, 771, 786
BstF5I GGATG 3 cut(s) 508, 785, 811
BstFNI CGCG 2 cut(s) 105, 344
BstKTI GATC 1 cut(s) 667
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 664
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 2 cut(s) 243, 252
BstNI CCWGG 1 cut(s) 719
BstSCI CCNGG 2 cut(s) 241, 717
BstSLI GKGCMC 1 cut(s) 684
BstUI CGCG 2 cut(s) 105, 344
BstV1I GCAGC 2 cut(s) 709, 769
BstZI CGGCCG 1 cut(s) 305
BsuRI GGCC 2 cut(s) 216, 307
BtrI CACGTC 1 cut(s) 324
BtsCI GGATG 3 cut(s) 508, 785, 811
BtsIMutI CAGTG 1 cut(s) 791
Cac8I GCNNGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 303
CseI GACGC 1 cut(s) 94
CviAII CATG 1 cut(s) 761
DdeI CTNAG 5 cut(s) 233, 408, 713, 771, 786
DpnI GATC 1 cut(s) 666
DpnII GATC 1 cut(s) 664
DraI TTTAAA 2 cut(s) 394, 565
DraIII CACNNNGTG 1 cut(s) 327
EaeI YGGCCR 2 cut(s) 214, 305
EagI CGGCCG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 305
Eco52I CGGCCG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 717
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 1 cut(s) 764
FaiI YATR 5 cut(s) 669, 701, 732, 762, 798
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 3 cut(s) 155, 753, 778
FatI CATG 1 cut(s) 760
FauI CCCGC 3 cut(s) 145, 153, 260
Fnu4HI GCNGC 4 cut(s) 159, 308, 723, 758
FokI GGATG 3 cut(s) 515, 792, 798
Fsp4HI GCNGC 4 cut(s) 159, 308, 723, 758
FspBI CTAG 2 cut(s) 447, 662
GluI GCNGC 4 cut(s) 159, 308, 723, 758
HaeIII GGCC 2 cut(s) 216, 307
HapII CCGG 3 cut(s) 213, 243, 304
HgaI GACGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 764
HinfI GANTC 5 cut(s) 80, 119, 153, 583, 745
HpaII CCGG 3 cut(s) 213, 243, 304
HphI GGTGA 4 cut(s) 272, 358, 497, 536
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 3 cut(s) 79, 190, 588
Hpy188III TCNNGA 3 cut(s) 116, 407, 547
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 3 cut(s) 110, 328, 338
HpyAV CCTTC 3 cut(s) 67, 84, 239
HpyCH4III ACNGT 2 cut(s) 518, 795
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 682
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 252
HpyF3I CTNAG 5 cut(s) 233, 408, 713, 771, 786
HpySE526I ACGT 1 cut(s) 323
Hsp92II CATG 1 cut(s) 764
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
Kzo9I GATC 1 cut(s) 664
LmnI GCTCC 2 cut(s) 242, 730
Lsp1109I GCAGC 2 cut(s) 709, 769
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 447, 662
MaeII ACGT 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 329, 425
MalI GATC 1 cut(s) 666
MbiI CCGCTC 1 cut(s) 310
MboI GATC 1 cut(s) 664
MboII GAAGA 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 4 cut(s) 258, 436, 577, 639
MlyI GAGTC 3 cut(s) 74, 113, 162
MmeI TCCRAC 3 cut(s) 102, 154, 213
MroNI GCCGGC 1 cut(s) 303
MseI TTAA 2 cut(s) 393, 564
MspI CCGG 3 cut(s) 213, 243, 304
MspR9I CCNGG 2 cut(s) 243, 719
Mva1269I GAATGC 2 cut(s) 402, 576
MvaI CCWGG 1 cut(s) 719
MvnI CGCG 2 cut(s) 105, 344
MwoI GCNNNNNNNGC 2 cut(s) 243, 252
NaeI GCCGGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 243
NdeII GATC 1 cut(s) 664
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 1 cut(s) 764
NlaIV GGNNCC 1 cut(s) 696
NmuCI GTSAC 1 cut(s) 329
NspV TTCGAA 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 2 cut(s) 402, 576
PdiI GCCGGC 1 cut(s) 305
PfeI GAWTC 2 cut(s) 583, 745
PkrI GCNGC 4 cut(s) 160, 309, 724, 759
PleI GAGTC 3 cut(s) 74, 113, 161
PpsI GAGTC 3 cut(s) 74, 113, 161
Psp6I CCWGG 1 cut(s) 717
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 1 cut(s) 696
SaqAI TTAA 2 cut(s) 393, 564
SatI GCNGC 4 cut(s) 159, 308, 723, 758
Sau3AI GATC 1 cut(s) 664
SchI GAGTC 3 cut(s) 74, 113, 162
ScrFI CCNGG 2 cut(s) 243, 719
SduI GDGCHC 1 cut(s) 684
SetI ASST 9 cut(s) 59, 95, 228, 239, 278, 326, 361, 531, 597
SfaNI GCATC 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 27
Sse9I AATT 4 cut(s) 258, 436, 577, 639
SsiI CCGC 9 cut(s) 103, 138, 146, 159, 181, 253, 301, 308, 344
SspMI CTAG 2 cut(s) 447, 662
StyD4I CCNGG 2 cut(s) 241, 717
TaaI ACNGT 2 cut(s) 518, 795
TaiI ACGT 1 cut(s) 326
TaqI TCGA 4 cut(s) 12, 27, 117, 287
TasI AATT 4 cut(s) 258, 436, 577, 639
TauI GCSGC 2 cut(s) 161, 310
TfiI GAWTC 2 cut(s) 583, 745
Tru1I TTAA 2 cut(s) 393, 564
Tru9I TTAA 2 cut(s) 393, 564
TscAI CASTG 1 cut(s) 798
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 722, 757
Tsp45I GTSAC 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 605, 757
TspRI CASTG 1 cut(s) 798
VneI GTGCAC 1 cut(s) 680
XspI CTAG 2 cut(s) 447, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.