Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001235

Physical Location & Seq

Genomic Coordinates Forward (+)

19012276 .. 19012824

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG110400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTATCCTCGATAATACCACTTTCGAAATCATAAGCCCATCTCGCTTCACCACCTTCAGTTTCCCAAACCCTTCCGACTCCGCCACCTCACTCCTCCGCGTCGCCGTTCTCGACTCGCCGCCGACCCACCCCGAGTCGCCGGAATGCTCGTCCCCAAACACCGCCACTCCGACTGGATATTCTCCACCCACTCCGGCCATCTCCCGCCTGATCCTCATCGGCGACAGCTCTCACGACTCGCCTCCAATCTACCGCCGTCCTCTCAAAGACGACGACACGTCGTGTGACGACGAAGTCCTCGGGGTGAGCTTGAAACCTCTCTTTCTTGCTTTATCTCCAAAGTCCTGCTTTAAACACGGCATTCCTGAGATACCCATTTTGAGTTACCAAGATAATTTGTTTTCTAGTTTGGTTTTGGAGAAGTGTGTTGGGTGTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGACTGTGGTGGTGAGGTTTCAACGAGGGAGTTTAGGAGGCGTTTGAGATTTAGAAGAATGCCCAATTTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synth

Protein Analysis

182

Amino Acids

20.03

Weight (kDa)

4.93

Isoelectric Point (pI)

75.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04610
fragaria_vesca	FvH4_7g06280 FvH4_7g06280 FvH4_7g06280 FvH4_7g06281
malus_domestica	MD07G1071500.v1.1
prunus_persica	Prupe.2G089200_v2.0.a1 Prupe.2G089200_v2.0.a1 Prupe.2G089200_v2.0.a1 Prupe.2G089200_v2.0.a1
pyrus_communis	pycom07g05430
rosa_chinensis	RchiOBHm_Chr1g0333841 RchiOBHm_Chr1g0333901 RchiOBHm_Chr1g0334121 RchiOBHm_Chr1g0335101 RchiOBHm_Chr1g0335121
rosa_laevigata	RLG00000029395 RLG00000029401 RLG00000029478 RLG00000029481
rosa_multiflora	Rmu_co8244035.1_g000001 Rmu_co8320637.1_g000001 Rmu_sc0000115.1_g000006 Rmu_sc0002722.1_g000007 Rmu_sc0003690.1_g000023 Rmu_sc0006326.1_g000025 Rmu_sc0006746.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028300 Rroxscaffold_4G00317000 Rroxscaffold_4G00317130 Rroxscaffold_5G00352360 Rroxscaffold_7G00185410
rosa_rugosa	Rorug01G0112400 Rorug01G0112700 Rorug01G0119900 Rorug01G0129700
rosa_samantha	Rh1AG136100 Rh1AG136200 Rh1AG136800 Rh1AG141900 Rh1BG104100 Rh1BG110400 Rh1BG110500 Rh1BG110800 Rh1BG110900 Rh1CG128500 Rh1CG128700 Rh1CG129000 Rh1CG133800 Rh1DG141300 Rh1DG141600 Rh1DG141800 Rh1DG158000
rosa_wichuraiana	Rw0G013970 Rw0G021360 Rw1G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AccII	CGCG	1 cut(s)	102
AciI	CCGC	6 cut(s)	84, 100, 122, 165, 208, 256
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	316, 495
AhdI	GACNNNNNGTC	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	282
AluBI	AGCT	2 cut(s)	231, 312
AluI	AGCT	2 cut(s)	231, 312
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	2 cut(s)	134, 302
AoxI	GGCC	1 cut(s)	198
AsuHPI	GGTGA	4 cut(s)	43, 319, 458, 497
AsuII	TTCGAA	1 cut(s)	27
AvaI	CYCGRG	2 cut(s)	134, 302
BccI	CCATC	2 cut(s)	49, 209
BceAI	ACGGC	3 cut(s)	92, 243, 376
BfaI	CTAG	2 cut(s)	408, 547
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmeT110I	CYCGRG	2 cut(s)	134, 302
BmgBI	CACGTC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bse1I	ACTGG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	200
BsiHKCI	CYCGRG	2 cut(s)	134, 302
BsiSI	CCGG	2 cut(s)	143, 197
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	3 cut(s)	152, 363, 537
BsnI	GGCC	1 cut(s)	200
BsoBI	CYCGRG	2 cut(s)	134, 302
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	213, 543
BspACI	CCGC	6 cut(s)	84, 100, 122, 165, 208, 256
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	102
BspPI	GGATC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	213, 543
Bst4CI	ACNGT	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	216, 546
BstMBI	GATC	2 cut(s)	213, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	200
BtrI	CACGTC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	469
CseI	GACGC	1 cut(s)	91
CviJI	RGCY	5 cut(s)	5, 39, 200, 231, 312
CviKI_1	RGCY	5 cut(s)	5, 39, 200, 231, 312
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	2 cut(s)	215, 545
DpnII	GATC	2 cut(s)	213, 543
DraI	TTTAAA	1 cut(s)	355
DraIII	CACNNNGTG	1 cut(s)	285
DrdI	GACNNNNNNGTC	1 cut(s)	296
DriI	GACNNNNNGTC	1 cut(s)	280
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	43
Eco88I	CYCGRG	2 cut(s)	134, 302
FaiI	YATR	1 cut(s)	35
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	139
FauI	CCCGC	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	2 cut(s)	408, 547
GluI	GCNGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	2 cut(s)	143, 197
HgaI	GACGC	1 cut(s)	91
HinfI	GANTC	4 cut(s)	80, 116, 137, 239
HpaII	CCGG	2 cut(s)	143, 197
HphI	GGTGA	4 cut(s)	43, 319, 458, 497
Hpy188I	TCNGA	2 cut(s)	79, 174
Hpy188III	TCNNGA	3 cut(s)	113, 236, 368
Hpy99I	CGWCG	4 cut(s)	107, 278, 286, 296
HpyAV	CCTTC	2 cut(s)	67, 84
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	213, 543
LpnPI	CCDG	6 cut(s)	156, 162, 210, 224, 361, 381
MaeI	CTAG	2 cut(s)	408, 547
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	287, 386
MalI	GATC	2 cut(s)	215, 545
MboI	GATC	2 cut(s)	213, 543
MboII	GAAGA	1 cut(s)	540
MluCI	AATT	2 cut(s)	397, 538
MlyI	GAGTC	4 cut(s)	74, 110, 146, 233
MmeI	TCCRAC	2 cut(s)	102, 197
MseI	TTAA	1 cut(s)	354
MspI	CCGG	2 cut(s)	143, 197
Mva1269I	GAATGC	3 cut(s)	152, 363, 537
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	2 cut(s)	213, 543
NmuCI	GTSAC	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	3 cut(s)	152, 363, 537
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	4 cut(s)	74, 110, 145, 233
PpsI	GAGTC	4 cut(s)	74, 110, 145, 233
PsyI	GACNNNGTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	2 cut(s)	213, 543
SchI	GAGTC	4 cut(s)	74, 110, 146, 233
SetI	ASST	7 cut(s)	59, 92, 233, 284, 314, 322, 492
SfuI	TTCGAA	1 cut(s)	27
Sse9I	AATT	2 cut(s)	397, 538
SsiI	CCGC	6 cut(s)	84, 100, 122, 165, 208, 256
SspMI	CTAG	2 cut(s)	408, 547
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	3 cut(s)	12, 27, 114
TasI	AATT	2 cut(s)	397, 538
TauI	GCSGC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
Tth111I	GACNNNGTC	1 cut(s)	296
XspI	CTAG	2 cut(s)	408, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.