Rh1DG141600

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001235
Physical Location & Seq
Reverse (-)
29849969 .. 29851167
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG141600.1

Sequence Viewer

Length: 633 bp
ATGGTGCTGGAGGATGTGGAGACTAACATTGGTGGTGAGGTTTCAAAGAGGGAGTTTAGGAGGCGTTTGAGATTTAAAAGAATGCCCAATTTGATTCAGATAGAAATGCATATTGTTCCCAAAATGGGTTTTGATTTGGATTGTGTGGGAATTGGACAAGTTGAGTTTAGGCTAGATGATAGTGTTTTAGTGCACTCTTATGTGGTTCCTATGGTCGCAAGTCTTGGCCTGGCTGCTCCTTATATTGAGGGACGGATTCGAAGTGGGGTTGTGGGTGTGGAAGCCGAAGAGGAGAGGCTAAGGGTTTCTAGGCGGTATTTTGGGCTGGACGATGGAGAGCACTCCGACTGGATATTCTCCACCCATTCCGGCCATCTCCCCCACCTCCTCAGCTCCCCCGCCATCTCCCGCCTAATTCTCATCGCCGACAGCTCTCACCACTCGCCTCCAATCTACCGCCGTCCGCTCAAAAACGACATGTCGTGTGACGACGAACTCGGGGTTGTGGGTGTGGAAGCCGATGAGGCAGTGCTAAGTGTTTCTAGGCGGTATTTTTGGCTGGAAGATGGTGAGCACATCAAAGTTTGTGTTGGAGATGCATTGGAATTTATAGATAAACTTGCTGGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

210

Amino Acids

23.6

Weight (kDa)

5.36

Isoelectric Point (pI)

64.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 626
AccBSI CCGCTC 1 cut(s) 466
AciI CCGC 6 cut(s) 313, 399, 409, 457, 464, 547
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 1 cut(s) 605
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 1 cut(s) 45
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 2 cut(s) 393, 432
AluI AGCT 2 cut(s) 393, 432
Alw21I GWGCWC 3 cut(s) 195, 342, 576
Alw26I GTCTC 1 cut(s) 14
Alw44I GTGCAC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 2 cut(s) 226, 370
ApaLI GTGCAC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 605
AsuHPI GGTGA 3 cut(s) 47, 428, 581
AsuII TTCGAA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 497
BaeGI GKGCMC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 626
Bbv12I GWGCWC 3 cut(s) 195, 342, 576
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 220
BccI CCATC 4 cut(s) 326, 381, 410, 560
BceAI ACGGC 1 cut(s) 444
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 3 cut(s) 173, 309, 543
BglI GCCNNNNNGGC 1 cut(s) 524
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 207, 628
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 586
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 2 cut(s) 299, 389
Bpu14I TTCGAA 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 230
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 305, 377
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 2 cut(s) 228, 372
BshNI GGYRCC 1 cut(s) 626
BsiHKAI GWGCWC 3 cut(s) 195, 342, 576
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 264
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 2 cut(s) 228, 372
BsoBI CYCGRG 1 cut(s) 497
Bsp119I TTCGAA 1 cut(s) 259
Bsp1286I GDGCHC 3 cut(s) 195, 342, 576
BspACI CCGC 6 cut(s) 313, 399, 409, 457, 464, 547
BspANI GGCC 2 cut(s) 228, 372
BspCNI CTCAG 1 cut(s) 402
BspLI GGNNCC 2 cut(s) 207, 628
BspT104I TTCGAA 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 626
BsrBI CCGCTC 1 cut(s) 466
BsrI ACTGG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 259
BstDEI CTNAG 3 cut(s) 299, 389, 533
BstF5I GGATG 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 228, 372
BtgZI GCGATG 1 cut(s) 406
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 1 cut(s) 534
CviAII CATG 1 cut(s) 478
DdeI CTNAG 3 cut(s) 299, 389, 533
DraI TTTAAA 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 228
EcoT22I ATGCAT 2 cut(s) 111, 601
FaeI CATG 1 cut(s) 481
FaiI YATR 6 cut(s) 111, 201, 212, 243, 479, 611
FaqI GGGAC 1 cut(s) 264
FatI CATG 1 cut(s) 477
FauI CCCGC 2 cut(s) 406, 416
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 3 cut(s) 173, 309, 543
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 2 cut(s) 228, 372
HapII CCGG 1 cut(s) 369
Hin1II CATG 1 cut(s) 481
HinfI GANTC 2 cut(s) 94, 256
HpaII CCGG 1 cut(s) 369
HphI GGTGA 3 cut(s) 47, 428, 581
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 99, 346
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 494
HpyCH4V TGCA 3 cut(s) 109, 193, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 3 cut(s) 299, 389, 533
Hsp92II CATG 1 cut(s) 481
LmnI GCTCC 2 cut(s) 241, 398
LpnPI CCDG 7 cut(s) 215, 242, 311, 334, 382, 545, 609
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 586
MaeI CTAG 3 cut(s) 173, 309, 543
MaeIII GTNAC 1 cut(s) 485
MbiI CCGCTC 1 cut(s) 466
MboII GAAGA 2 cut(s) 299, 575
MhlI GDGCHC 3 cut(s) 195, 342, 576
MluCI AATT 4 cut(s) 88, 150, 414, 605
MmeI TCCRAC 2 cut(s) 369, 571
Mph1103I ATGCAT 2 cut(s) 111, 601
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 524
NlaIII CATG 1 cut(s) 481
NlaIV GGNNCC 2 cut(s) 207, 628
NmuCI GTSAC 1 cut(s) 485
NsiI ATGCAT 2 cut(s) 111, 601
NspI RCATGY 1 cut(s) 481
NspV TTCGAA 1 cut(s) 259
PciI ACATGT 1 cut(s) 477
PctI GAATGC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 94, 256
PkrI GCNGC 1 cut(s) 235
PscI ACATGT 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 207, 628
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 3 cut(s) 195, 342, 576
SetI ASST 4 cut(s) 42, 387, 395, 434
SfaNI GCATC 1 cut(s) 586
SfuI TTCGAA 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 4 cut(s) 88, 150, 414, 605
SsiI CCGC 6 cut(s) 313, 399, 409, 457, 464, 547
SspMI CTAG 3 cut(s) 173, 309, 543
StyD4I CCNGG 1 cut(s) 228
TaqI TCGA 1 cut(s) 259
TasI AATT 4 cut(s) 88, 150, 414, 605
TfiI GAWTC 2 cut(s) 94, 256
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 485
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 534
VneI GTGCAC 1 cut(s) 191
XapI RAATTY 1 cut(s) 605
XceI RCATGY 1 cut(s) 481
XspI CTAG 3 cut(s) 173, 309, 543
Zsp2I ATGCAT 2 cut(s) 111, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.