FvH4_7g06281

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001235
Physical Location & Seq
Reverse (-)
6377162 .. 6377780
619 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06281.t1

Sequence Viewer

Length: 546 bp
ATGGAGATATGTGATGGGCCTTTGGTTGGTGAAATGGTGGTGGAGGATGTCGAGATTGATTGCGGTGGTGAGGTTTCGAAGAGGGAGGTTTGGTCGGGAATTGGACAAGTTGAGTGTAAGCTAGATGATAGTGATTTAGTTTTAGTGCACCCTTATTTGGTTCCTATGGCGGCAACTTTTAGCCTGGCTGCTCCTTATATTGAGGGAAGCATTTGTAGCGGGGTAAGGCCAAATGCTTTGTGTTTAGGAGTTGGAGGTGGGGCTTTGCTTGGTTTCGTGAGGACCCAGTTTGGCTTTCAGGTTGTGGGTGTGGAAGCCTATGAGGAGGCGCTAAGGGTTTCTTGGCGGTATTTTGGACTCGAAGATGGTGAGCACATTCTAGATAAATTTGTTGATGCTTGTCAGGTAGAGGAGGGTTGTGACGTGGGCAGTGGCAATGATGTTGATACTGAATTTGATGTGATTATGGTTGACTTGGATTCAAGTGATGGTAGGGAGTTTGTTAGGAAGAATGTCCTTTTTCTCAGCCAGATCAATTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

182

Amino Acids

19.61

Weight (kDa)

4.07

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 63, 170, 219, 346
AcsI RAATTY 2 cut(s) 386, 452
AfiI CCNNNNNNNGG 2 cut(s) 26, 157
AgsI TTSAA 1 cut(s) 483
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 2 cut(s) 150, 375
Alw44I GTGCAC 1 cut(s) 146
AoxI GGCC 2 cut(s) 17, 227
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 2 cut(s) 386, 452
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 2 cut(s) 17, 282
AsuHPI GGTGA 3 cut(s) 41, 80, 380
AsuII TTCGAA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 150, 375
BbvI GCAGC 1 cut(s) 175
BccI CCATC 3 cut(s) 8, 359, 482
BciT130I CCWGG 1 cut(s) 185
BfaI CTAG 2 cut(s) 122, 380
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 2 cut(s) 171, 189
BlsI GCNGC 2 cut(s) 172, 190
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 282
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 2 cut(s) 17, 282
BmiI GGNNCC 2 cut(s) 162, 284
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 332
Bpu14I TTCGAA 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 157
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 26, 157
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 538
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 338, 425
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 1 cut(s) 175
BshFI GGCC 2 cut(s) 19, 229
BsiHKAI GWGCWC 2 cut(s) 150, 375
BslI CCNNNNNNNGG 2 cut(s) 26, 157
BsnI GGCC 2 cut(s) 19, 229
Bsp119I TTCGAA 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 150, 375
Bsp143I GATC 1 cut(s) 531
BspACI CCGC 4 cut(s) 63, 170, 219, 346
BspANI GGCC 2 cut(s) 19, 229
BspCNI CTCAG 1 cut(s) 537
BspLI GGNNCC 2 cut(s) 162, 284
BspT104I TTCGAA 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 442
BsrI ACTGG 1 cut(s) 286
BssMI GATC 1 cut(s) 531
Bst2UI CCWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 332, 524
BstF5I GGATG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 1 cut(s) 534
BstMBI GATC 1 cut(s) 531
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 19, 229
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 436
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 17, 282
CviJI RGCY 9 cut(s) 19, 121, 183, 188, 229, 263, 294, 317, 528
CviKI_1 RGCY 9 cut(s) 19, 121, 183, 188, 229, 263, 294, 317, 528
DdeI CTNAG 2 cut(s) 332, 524
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 183
FaiI YATR 5 cut(s) 10, 167, 198, 321, 467
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FauI CCCGC 1 cut(s) 212
Fnu4HI GCNGC 2 cut(s) 171, 189
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 171, 189
FspBI CTAG 2 cut(s) 122, 380
GlaI GCGC 1 cut(s) 330
GluI GCNGC 2 cut(s) 171, 189
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 2 cut(s) 19, 229
HhaI GCGC 1 cut(s) 331
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 2 cut(s) 357, 479
HphI GGTGA 3 cut(s) 41, 80, 380
Hpy166II GTNNAC 2 cut(s) 148, 472
Hpy188I TCNGA 1 cut(s) 545
Hpy188III TCNNGA 4 cut(s) 52, 96, 277, 380
Hpy8I GTNNAC 2 cut(s) 148, 472
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 2 cut(s) 332, 524
HpySE526I ACGT 1 cut(s) 423
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 1 cut(s) 531
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 6 cut(s) 170, 197, 284, 299, 389, 542
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 385
MaeI CTAG 2 cut(s) 122, 380
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 419
MalI GATC 1 cut(s) 533
MboI GATC 1 cut(s) 531
MboII GAAGA 3 cut(s) 91, 374, 520
MhlI GDGCHC 2 cut(s) 150, 375
MluCI AATT 4 cut(s) 99, 386, 452, 535
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 1 cut(s) 531
NlaIV GGNNCC 2 cut(s) 162, 284
NmuCI GTSAC 1 cut(s) 419
NspV TTCGAA 1 cut(s) 77
PfeI GAWTC 1 cut(s) 479
PkrI GCNGC 2 cut(s) 172, 190
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 162, 284
PspPI GGNCC 2 cut(s) 17, 282
PspPPI RGGWCCY 1 cut(s) 282
SatI GCNGC 2 cut(s) 171, 189
Sau3AI GATC 1 cut(s) 531
Sau96I GGNCC 2 cut(s) 17, 282
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 2 cut(s) 150, 375
SetI ASST 7 cut(s) 75, 90, 123, 259, 303, 408, 426
SfaNI GCATC 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 77
SinI GGWCC 1 cut(s) 282
Sse9I AATT 4 cut(s) 99, 386, 452, 535
SsiI CCGC 4 cut(s) 63, 170, 219, 346
SspMI CTAG 2 cut(s) 122, 380
StyD4I CCNGG 1 cut(s) 183
TaiI ACGT 1 cut(s) 426
TaqI TCGA 3 cut(s) 51, 77, 360
TasI AATT 4 cut(s) 99, 386, 452, 535
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 479
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 419
TspRI CASTG 1 cut(s) 436
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 282
XapI RAATTY 2 cut(s) 386, 452
XbaI TCTAGA 1 cut(s) 379
XspI CTAG 2 cut(s) 122, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.