Rh1DG141800

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001235
Physical Location & Seq
Reverse (-)
29878587 .. 29879966
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG141800.1

Sequence Viewer

Length: 1380 bp
ATGGCTATCCTCGATGAGACGACTTTCGAAATGATAAACCCATCTCGTTTCACTACCTTCACTTTCCCAAACCCTTGCGACTCCACCACCACCTCACTCCTCCGCGTCGCCGTTCTCGACTCGCCTTTCCAACCCCCCGCCGACCCACCCCGAGTCGCCGCAATGCTCGTCCCCAAACACCGCCACTCCGACTGGATATTCTCCACCCACTCCGGCCATCTCCACCTCCTCCTCAGCTCCCCCGGCATCTCCCGCCTGATCCTCATCGGCGACAGCTCTCACCACTCGCCTCCAATCTACCGCCGTCCTCTCAAAGACGACGACACGTCGTGTGACGACGAAGTCCTCGGGGTGAGCTTGAAACCTCTCTTCCTTGCTTTATCTCCCAAGTCCTGCTTTAAACACGGCATTCCTGAGATACCCATTTTGAGTTACCAAGATAATTTGATTTCTAGTTTGGTTTTGGAGAAGTGTGTTGGATCTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGACATTGGTGGTGAGGTTTCAACGAGGGAGTTCAGGAGGCGTTTGAGGTTTAAAAGAATGCCCAATTTGATTCAGACGGAGGTGCGTATTGTTCCCAAAATGGGTTTTGGTTTGGATTGTGTAGGAATTGGACAAGTTGAGTTTAGGCTGGATGATAGTGTTTTAGTGCACTCTTATTTGGTTCCTATGGTCGCAAGTCTTAGCCTGGCTGCTCCTTACATTGAGGGACGGATTCAAAGTGGGGTAAGGCCAAAAGCTTTGTGTTTAGGAGTTGGGGGTGGGGCTTTGCTTGGTTTCATGAGAACCCAATTGGGTTTTCAGGTTGTGGGTGTGGAAGCCGATGAGGAGGTGCTAAGTGTTTCTAGGCGGTATTTTGGGCTGGAAGATGGTGAGCACATCAAAGTTTGTGTTGGAGATGCATTGGAATTTATAGATAAACTTGCTGGTGCCTGCGAGGTAGAGGTTGGTTGTGACGTGGGCAGAGGCAATGATGTTAATACTAAGTTTGATGTGATTATGGTTGATTTGGATTCAAGTGATGCTAGGGATGGTCTAATTGCTCCACCATTGGAGTTTGTTCAGAAGCATGTCCTTTTGTCAGCCAGATCAATTCTCTCTGAAAATGGAATCCTAGCTATAAATGTGATTCCTCCAGATACATCATTTTACAAGACATTGGTCCATGAGTTTCGAGATGTTTTTAATGACTTATACGAAATAGATGTGGGAAATGGGGAAAATTTTATTCTTATTGCTGTGGCATCGCCTCTCATGCCTTCTAGTGATTGCGAGAACTGTTTCCTCACCAAACTAGGAAACACTATATTGGGGGCATACTTGAATTCCGTAAAGAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

459

Amino Acids

50.3

Weight (kDa)

5.06

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 965
AccII CGCG 1 cut(s) 105
AciI CCGC 7 cut(s) 103, 138, 159, 181, 253, 301, 886
AclWI GGATC 2 cut(s) 253, 487
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 3 cut(s) 944, 1258, 1360
AdeI CACNNNGTG 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 5 cut(s) 361, 540, 755, 1053, 1360
AhdI GACNNNNNGTC 1 cut(s) 325
AjiI CACGTC 2 cut(s) 327, 994
AjnI CCWGG 1 cut(s) 723
AjuI GAANNNNNNNTTGG 2 cut(s) 819, 851
AluBI AGCT 5 cut(s) 237, 276, 357, 776, 1154
AluI AGCT 5 cut(s) 237, 276, 357, 776, 1154
Alw21I GWGCWC 2 cut(s) 690, 915
Alw26I GTCTC 1 cut(s) 11
Alw44I GTGCAC 1 cut(s) 686
AlwI GGATC 2 cut(s) 253, 487
Ama87I CYCGRG 2 cut(s) 150, 347
AoxI GGCC 2 cut(s) 214, 767
ApaLI GTGCAC 1 cut(s) 686
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 3 cut(s) 944, 1258, 1360
Asp700I GAANNNNTTC 1 cut(s) 1316
AspS9I GGNCC 1 cut(s) 1198
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 6 cut(s) 272, 364, 503, 542, 920, 1315
AsuII TTCGAA 1 cut(s) 27
AvaI CYCGRG 2 cut(s) 150, 347
AvaII GGWCC 1 cut(s) 1198
BaeGI GKGCMC 1 cut(s) 690
BanI GGYRCC 1 cut(s) 965
Bbv12I GWGCWC 2 cut(s) 690, 915
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 715
BccI CCATC 4 cut(s) 49, 225, 899, 1061
BceAI ACGGC 3 cut(s) 95, 288, 421
BciT130I CCWGG 1 cut(s) 725
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 6 cut(s) 453, 882, 1062, 1151, 1299, 1331
BglII AGATCT 1 cut(s) 1374
BisI GCNGC 2 cut(s) 159, 729
BlsI GCNGC 2 cut(s) 160, 730
Bme1390I CCNGG 2 cut(s) 243, 725
Bme18I GGWCC 1 cut(s) 1198
BmeRI GACNNNNNGTC 1 cut(s) 325
BmeT110I CYCGRG 2 cut(s) 150, 347
BmgBI CACGTC 2 cut(s) 327, 994
BmgT120I GGNCC 1 cut(s) 1198
BmiI GGNNCC 2 cut(s) 702, 967
BmrFI CCNGG 2 cut(s) 243, 725
BmsI GCATC 4 cut(s) 255, 925, 1048, 1289
BoxI GACNNNNGTC 1 cut(s) 1196
BpmI CTGGAG 1 cut(s) 1155
Bpu10I CCTNAGC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 241, 346
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 2 cut(s) 168, 1012
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 725
BseDI CCNNGG 2 cut(s) 241, 346
BseGI GGATG 3 cut(s) 514, 676, 1072
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 2 cut(s) 168, 1012
BseMII CTCAG 2 cut(s) 247, 405
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 4 cut(s) 89, 218, 221, 878
BseSI GKGCMC 1 cut(s) 690
BseXI GCAGC 1 cut(s) 715
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 216, 769
BshNI GGYRCC 1 cut(s) 965
BsiHKAI GWGCWC 2 cut(s) 690, 915
BsiHKCI CYCGRG 2 cut(s) 150, 347
BsiSI CCGG 2 cut(s) 213, 243
BslFI GGGAC 2 cut(s) 155, 759
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 2 cut(s) 155, 759
BsmI GAATGC 2 cut(s) 408, 582
BsnI GGCC 2 cut(s) 216, 769
BsoBI CYCGRG 2 cut(s) 150, 347
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 690, 915
Bsp143I GATC 4 cut(s) 258, 479, 1124, 1374
BspACI CCGC 7 cut(s) 103, 138, 159, 181, 253, 301, 886
BspANI GGCC 2 cut(s) 216, 769
BspCNI CTCAG 2 cut(s) 246, 406
BspFNI CGCG 1 cut(s) 105
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 2 cut(s) 702, 967
BspPI GGATC 2 cut(s) 253, 487
BspT104I TTCGAA 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 965
BsrDI GCAATG 2 cut(s) 168, 1012
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 241, 346
BssMI GATC 4 cut(s) 258, 479, 1124, 1374
Bst2UI CCWGG 1 cut(s) 725
Bst4CI ACNGT 1 cut(s) 1316
Bst6I CTCTTC 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 970
BstDEI CTNAG 5 cut(s) 233, 414, 719, 872, 1020
BstF5I GGATG 3 cut(s) 514, 676, 1072
BstFNI CGCG 1 cut(s) 105
BstKTI GATC 4 cut(s) 261, 482, 1127, 1377
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 4 cut(s) 258, 479, 1124, 1374
BstMWI GCNNNNNNNGC 3 cut(s) 243, 252, 1291
BstNI CCWGG 1 cut(s) 725
BstNSI RCATGY 1 cut(s) 1109
BstPAI GACNNNNGTC 1 cut(s) 1196
BstSCI CCNGG 2 cut(s) 241, 723
BstSLI GKGCMC 1 cut(s) 690
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 715
BstX2I RGATCY 2 cut(s) 479, 1374
BstYI RGATCY 2 cut(s) 479, 1374
BsuRI GGCC 2 cut(s) 216, 769
BtgZI GCGATG 1 cut(s) 1266
BtrI CACGTC 2 cut(s) 327, 994
BtsCI GGATG 3 cut(s) 514, 676, 1072
Cac8I GCNNGC 1 cut(s) 970
CciI TCATGA 1 cut(s) 816
Cfr13I GGNCC 1 cut(s) 1198
CseI GACGC 1 cut(s) 94
CviAII CATG 4 cut(s) 817, 1106, 1202, 1291
DdeI CTNAG 5 cut(s) 233, 414, 719, 872, 1020
DpnI GATC 4 cut(s) 260, 481, 1126, 1376
DpnII GATC 4 cut(s) 258, 479, 1124, 1374
DraI TTTAAA 2 cut(s) 400, 571
DraIII CACNNNGTG 1 cut(s) 330
DrdI GACNNNNNNGTC 1 cut(s) 341
DriI GACNNNNNGTC 1 cut(s) 325
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 374
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 1198
Eco88I CYCGRG 2 cut(s) 150, 347
EcoRI GAATTC 1 cut(s) 1360
EcoRII CCWGG 1 cut(s) 723
EcoT22I ATGCAT 1 cut(s) 940
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 4 cut(s) 820, 1109, 1205, 1294
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 2 cut(s) 155, 759
FatI CATG 4 cut(s) 816, 1105, 1201, 1290
FauI CCCGC 2 cut(s) 145, 260
Fnu4HI GCNGC 2 cut(s) 159, 729
FokI GGATG 3 cut(s) 521, 683, 1079
Fsp4HI GCNGC 2 cut(s) 159, 729
FspBI CTAG 6 cut(s) 453, 882, 1062, 1151, 1299, 1331
GluI GCNGC 2 cut(s) 159, 729
GsuI CTGGAG 1 cut(s) 1155
HaeIII GGCC 2 cut(s) 216, 769
HapII CCGG 2 cut(s) 213, 243
HgaI GACGC 1 cut(s) 94
Hin1II CATG 4 cut(s) 820, 1109, 1205, 1294
HindIII AAGCTT 1 cut(s) 774
HinfI GANTC 8 cut(s) 80, 119, 153, 589, 751, 1049, 1146, 1165
HpaII CCGG 2 cut(s) 213, 243
HphI GGTGA 6 cut(s) 272, 364, 503, 542, 920, 1315
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 4 cut(s) 190, 594, 1101, 1138
Hpy188III TCNNGA 6 cut(s) 116, 413, 553, 817, 1172, 1211
Hpy8I GTNNAC 1 cut(s) 688
Hpy99I CGWCG 4 cut(s) 110, 323, 331, 341
HpyAV CCTTC 2 cut(s) 67, 1305
HpyCH4III ACNGT 1 cut(s) 1316
HpyCH4IV ACGT 2 cut(s) 326, 993
HpyCH4V TGCA 2 cut(s) 688, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 252, 1291
HpyF3I CTNAG 5 cut(s) 233, 414, 719, 872, 1020
HpySE526I ACGT 2 cut(s) 326, 993
Hsp92II CATG 4 cut(s) 820, 1109, 1205, 1294
Kzo9I GATC 4 cut(s) 258, 479, 1124, 1374
LmnI GCTCC 3 cut(s) 242, 736, 1084
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 4 cut(s) 255, 925, 1048, 1289
MaeI CTAG 6 cut(s) 453, 882, 1062, 1151, 1299, 1331
MaeII ACGT 2 cut(s) 326, 993
MaeIII GTNAC 3 cut(s) 332, 431, 989
MalI GATC 4 cut(s) 260, 481, 1126, 1376
MboI GATC 4 cut(s) 258, 479, 1124, 1374
MboII GAAGA 2 cut(s) 361, 914
MfeI CAATTG 1 cut(s) 827
MflI RGATCY 2 cut(s) 479, 1374
MhlI GDGCHC 2 cut(s) 690, 915
MluCI AATT 9 cut(s) 442, 583, 645, 827, 944, 1074, 1128, 1258, 1360
MlyI GAGTC 3 cut(s) 74, 113, 162
MmeI TCCRAC 4 cut(s) 154, 213, 457, 910
Mph1103I ATGCAT 1 cut(s) 940
MroXI GAANNNNTTC 1 cut(s) 1316
MseI TTAA 4 cut(s) 399, 570, 1014, 1221
MspI CCGG 2 cut(s) 213, 243
MspR9I CCNGG 2 cut(s) 243, 725
MunI CAATTG 1 cut(s) 827
Mva1269I GAATGC 2 cut(s) 408, 582
MvaI CCWGG 1 cut(s) 725
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 243, 252, 1291
NciI CCSGG 1 cut(s) 243
NdeII GATC 4 cut(s) 258, 479, 1124, 1374
NlaIII CATG 4 cut(s) 820, 1109, 1205, 1294
NlaIV GGNNCC 2 cut(s) 702, 967
NmuCI GTSAC 2 cut(s) 332, 989
NsiI ATGCAT 1 cut(s) 940
NspI RCATGY 1 cut(s) 1109
NspV TTCGAA 1 cut(s) 27
PagI TCATGA 1 cut(s) 816
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 2 cut(s) 408, 582
PdmI GAANNNNTTC 1 cut(s) 1316
PfeI GAWTC 5 cut(s) 589, 751, 1049, 1146, 1165
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 160, 730
PleI GAGTC 3 cut(s) 74, 113, 161
PpsI GAGTC 3 cut(s) 74, 113, 161
PshAI GACNNNNGTC 1 cut(s) 1196
Psp6I CCWGG 1 cut(s) 723
PspGI CCWGG 1 cut(s) 723
PspN4I GGNNCC 2 cut(s) 702, 967
PspPI GGNCC 1 cut(s) 1198
PsuI RGATCY 2 cut(s) 479, 1374
PsyI GACNNNGTC 1 cut(s) 341
SaqAI TTAA 4 cut(s) 399, 570, 1014, 1221
SatI GCNGC 2 cut(s) 159, 729
Sau3AI GATC 4 cut(s) 258, 479, 1124, 1374
Sau96I GGNCC 1 cut(s) 1198
SchI GAGTC 3 cut(s) 74, 113, 162
ScrFI CCNGG 2 cut(s) 243, 725
SduI GDGCHC 2 cut(s) 690, 915
SfaNI GCATC 4 cut(s) 255, 925, 1048, 1289
SfuI TTCGAA 1 cut(s) 27
SinI GGWCC 1 cut(s) 1198
Sse9I AATT 9 cut(s) 442, 583, 645, 827, 944, 1074, 1128, 1258, 1360
SsiI CCGC 7 cut(s) 103, 138, 159, 181, 253, 301, 886
SspMI CTAG 6 cut(s) 453, 882, 1062, 1151, 1299, 1331
StyD4I CCNGG 2 cut(s) 241, 723
TaaI ACNGT 1 cut(s) 1316
TaiI ACGT 2 cut(s) 329, 996
TaqI TCGA 4 cut(s) 12, 27, 117, 1210
TasI AATT 9 cut(s) 442, 583, 645, 827, 944, 1074, 1128, 1258, 1360
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 5 cut(s) 589, 751, 1049, 1146, 1165
Tru1I TTAA 4 cut(s) 399, 570, 1014, 1221
Tru9I TTAA 4 cut(s) 399, 570, 1014, 1221
TseFI GTSAC 2 cut(s) 332, 989
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 2 cut(s) 332, 989
TspDTI ATGAA 1 cut(s) 805
TspGWI ACGGA 3 cut(s) 611, 763, 1354
Tth111I GACNNNGTC 1 cut(s) 341
VneI GTGCAC 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 1198
XapI RAATTY 3 cut(s) 944, 1258, 1360
XceI RCATGY 1 cut(s) 1109
XmnI GAANNNNTTC 1 cut(s) 1316
XspI CTAG 6 cut(s) 453, 882, 1062, 1151, 1299, 1331
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.