RchiOBHm_Chr1g0335101

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001235
Physical Location & Seq
Forward (+)
27284754 .. 27285170
417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56378

Sequence Viewer

Length: 417 bp
ATGATCGTCCCCAAACACCGCCACTCCGATTGGATATTCTCTACTCACTCCGGCCATCTCCAGCTCCTCCTCAGCTCTCCTGGCATCTCCCGCCTAATTCTCATCGGGGTGAGCTTGAAACCTCTCTTTCTTGCTTTATCTCCCAAGTCCAAGTCCTGCTTTAAACACGGCATTCCTGAGATACCCATTTTGAGTTACCAAGATAGTTTGATTTCTAGTTTGGTTTTGGAGAAATGCGTTGGGTGTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGACTCTGGTGGTGAGGTTTCAAAGAGGGAGTTCAGGAGGCATTTGAGGTTTGAAAGAATGCCCTATGTGATCCAGACGGAGGTGCGCATGGTTCCCAAAATGGGTTTTGGTTTGGACAAGTTGAGTTTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

138

Amino Acids

15.47

Weight (kDa)

8.86

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 368
AciI CCGC 2 cut(s) 19, 91
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 52
AfiI CCNNNNNNNGG 2 cut(s) 361, 383
AgsI TTSAA 3 cut(s) 118, 303, 335
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 3 cut(s) 64, 75, 114
AluI AGCT 3 cut(s) 64, 75, 114
AlwI GGATC 1 cut(s) 346
AoxI GGCC 1 cut(s) 52
AspLEI GCGC 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 121, 266, 305
BbvCI CCTCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 81
BfaI CTAG 2 cut(s) 216, 415
Bme1390I CCNGG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BpmI CTGGAG 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 383
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 361, 383
BseMII CTCAG 2 cut(s) 85, 168
BseRI GAGGAG 2 cut(s) 56, 59
BshFI GGCC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 361, 383
BsmI GAATGC 2 cut(s) 171, 345
BsnI GGCC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 3, 351
BspACI CCGC 2 cut(s) 19, 91
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 2 cut(s) 84, 169
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 1 cut(s) 346
BssMI GATC 2 cut(s) 3, 351
Bst2UI CCWGG 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 71, 177
BstF5I GGATG 1 cut(s) 277
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 2 cut(s) 6, 354
BstMBI GATC 2 cut(s) 3, 351
BstMWI GCNNNNNNNGC 2 cut(s) 81, 90
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BsuRI GGCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 277
CfoI GCGC 1 cut(s) 369
CspCI CAANNNNNGTGG 2 cut(s) 11, 46
CviAII CATG 1 cut(s) 370
CviJI RGCY 5 cut(s) 54, 64, 75, 114, 414
CviKI_1 RGCY 5 cut(s) 54, 64, 75, 114, 414
DdeI CTNAG 2 cut(s) 71, 177
DpnI GATC 2 cut(s) 5, 353
DpnII GATC 2 cut(s) 3, 351
DraI TTTAAA 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 373
FaiI YATR 2 cut(s) 348, 371
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 1 cut(s) 369
FauI CCCGC 1 cut(s) 98
FokI GGATG 1 cut(s) 284
FspAI RTGCGCAY 1 cut(s) 368
FspBI CTAG 2 cut(s) 216, 415
FspI TGCGCA 1 cut(s) 368
GlaI GCGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 54
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 369
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HinfI GANTC 1 cut(s) 284
HpaII CCGG 1 cut(s) 51
HphI GGTGA 3 cut(s) 121, 266, 305
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 3 cut(s) 176, 316, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 90
HpyF3I CTNAG 2 cut(s) 71, 177
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 1 cut(s) 367
Kzo9I GATC 2 cut(s) 3, 351
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 9 cut(s) 64, 66, 74, 93, 169, 189, 273, 301, 368
LweI GCATC 1 cut(s) 93
MaeI CTAG 2 cut(s) 216, 415
MaeIII GTNAC 1 cut(s) 194
MalI GATC 2 cut(s) 5, 353
MboI GATC 2 cut(s) 3, 351
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 9 cut(s) 77, 80, 132, 262, 289, 300, 312, 321, 355
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 107
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 2 cut(s) 171, 345
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 81, 90
NdeII GATC 2 cut(s) 3, 351
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 1 cut(s) 375
NsbI TGCGCA 1 cut(s) 368
PctI GAATGC 2 cut(s) 171, 345
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 2 cut(s) 3, 351
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 81
SetI ASST 7 cut(s) 66, 77, 116, 124, 300, 332, 366
SfaNI GCATC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 1 cut(s) 96
SsiI CCGC 2 cut(s) 19, 91
SspMI CTAG 2 cut(s) 216, 415
StyD4I CCNGG 1 cut(s) 79
TasI AATT 1 cut(s) 96
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 374
XspI CTAG 2 cut(s) 216, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.