Rmu_sc0002722.1_g000007

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002722.1
OG0001235
Physical Location & Seq
Forward (+)
24488 .. 25291
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002722.1_g000007.1.cds

Sequence Viewer

Length: 804 bp
atgccctatgtgatccacacggaggtgctcattgttcccaaaatgggtttgggttttggtttggattgtgtgggaattggacaagttgagtttaggctagatgatagtgttgttttagtgcactcttatttggttcctatggtcgcaagtcttagcctgcctgctccttatatggagggacggattcgaagtggggtaaggccaaaagctttgtgtctaggagttgggggtggggctttgcttggtttcttattgggttttcaggttgtgggtgtggaagccgatgaagaggtgttaaggctttctaggcggtattttgggctggacgatggagagcatatcacattttgtgttggagatgcattaaaagttgttgataaacttgctggtgcctgcgaggtagaggttggttgtgacgtgggcagtgataatgatgttgatactaagtttgatgtgattatggttgatttggattcaagtgatgctagggatggtctaattgctccgccattggagtttgttaggaagcatgtccttttgtcagccagatcaattctctctgataatggaatcctagctataaatgtgattcctccaagtacatcattttacaggacattgatccatgagtttcgagatgttttcaatgagttatacgaaatagatgtgggaaacggagaaaattttattcttattgctgtgacatcgcctcttatgccttctagtgattgtgagaactgtttcctcagcaaactagggaaagctatatccggggcatacttgaattccataaagaagatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

267

Amino Acids

28.85

Weight (kDa)

4.7

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AciI CCGC 2 cut(s) 310, 506
AclWI GGATC 2 cut(s) 7, 616
AcsI RAATTY 2 cut(s) 682, 784
AfaI GTAC 1 cut(s) 601
AfiI CCNNNNNNNGG 2 cut(s) 22, 44
AgsI TTSAA 3 cut(s) 477, 646, 784
AjiI CACGTC 1 cut(s) 418
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 3 cut(s) 209, 578, 764
AluI AGCT 3 cut(s) 209, 578, 764
Alw21I GWGCWC 2 cut(s) 30, 123
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 2 cut(s) 7, 616
AoxI GGCC 1 cut(s) 200
ApaLI GTGCAC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 682, 784
Asp700I GAANNNNTTC 1 cut(s) 740
AsuC2I CCSGG 1 cut(s) 772
AsuII TTCGAA 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 389
Bbv12I GWGCWC 2 cut(s) 30, 123
BbvCI CCTCAGC 1 cut(s) 746
BccI CCATC 2 cut(s) 323, 485
BcnI CCSGG 1 cut(s) 772
BfaI CTAG 7 cut(s) 98, 218, 306, 486, 575, 723, 755
BglII AGATCT 1 cut(s) 798
Bme1390I CCNGG 1 cut(s) 772
BmgBI CACGTC 1 cut(s) 418
BmiI GGNNCC 2 cut(s) 135, 391
BmrFI CCNGG 1 cut(s) 772
BmsI GCATC 2 cut(s) 349, 472
Bpu10I CCTNAGC 1 cut(s) 746
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 772
BsaJI CCNNGG 1 cut(s) 771
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 44
BseDI CCNNGG 1 cut(s) 771
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 2 cut(s) 22, 44
BseMII CTCAG 1 cut(s) 760
BseSI GKGCMC 1 cut(s) 123
BshFI GGCC 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 389
BsiHKAI GWGCWC 2 cut(s) 30, 123
BsiSI CCGG 1 cut(s) 771
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 22, 44
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 202
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 30, 123
Bsp143I GATC 4 cut(s) 12, 548, 621, 798
BspACI CCGC 2 cut(s) 310, 506
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 759
BspLI GGNNCC 2 cut(s) 135, 391
BspPI GGATC 2 cut(s) 7, 616
BspT104I TTCGAA 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 771
BssMI GATC 4 cut(s) 12, 548, 621, 798
Bst4CI ACNGT 1 cut(s) 740
Bst6I CTCTTC 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 3 cut(s) 158, 162, 394
BstDEI CTNAG 3 cut(s) 152, 444, 746
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 4 cut(s) 15, 551, 624, 801
BstMBI GATC 4 cut(s) 12, 548, 621, 798
BstMWI GCNNNNNNNGC 2 cut(s) 307, 715
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 770
BstSLI GKGCMC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 798
BstYI RGATCY 1 cut(s) 798
BsuRI GGCC 1 cut(s) 202
BtgZI GCGATG 1 cut(s) 690
BtrI CACGTC 1 cut(s) 418
BtsCI GGATG 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 3 cut(s) 158, 162, 394
Csp6I GTAC 1 cut(s) 600
CviAII CATG 2 cut(s) 530, 626
CviQI GTAC 1 cut(s) 600
DdeI CTNAG 3 cut(s) 152, 444, 746
DpnI GATC 4 cut(s) 14, 550, 623, 800
DpnII GATC 4 cut(s) 12, 548, 621, 798
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 495
EcoRI GAATTC 1 cut(s) 784
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 2 cut(s) 533, 629
FaqI GGGAC 1 cut(s) 192
FatI CATG 2 cut(s) 529, 625
FokI GGATG 1 cut(s) 503
FspBI CTAG 7 cut(s) 98, 218, 306, 486, 575, 723, 755
HaeIII GGCC 1 cut(s) 202
HapII CCGG 1 cut(s) 771
Hin1II CATG 2 cut(s) 533, 629
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 4 cut(s) 184, 473, 570, 589
HpaII CCGG 1 cut(s) 771
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 562
Hpy188III TCNNGA 1 cut(s) 635
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 729
HpyCH4III ACNGT 1 cut(s) 740
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 2 cut(s) 121, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 715
HpyF3I CTNAG 3 cut(s) 152, 444, 746
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 2 cut(s) 533, 629
Kzo9I GATC 4 cut(s) 12, 548, 621, 798
LmnI GCTCC 2 cut(s) 169, 508
LpnPI CCDG 9 cut(s) 170, 174, 248, 308, 372, 406, 559, 598, 784
LweI GCATC 2 cut(s) 349, 472
MaeI CTAG 7 cut(s) 98, 218, 306, 486, 575, 723, 755
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 2 cut(s) 413, 700
MalI GATC 4 cut(s) 14, 550, 623, 800
MboI GATC 4 cut(s) 12, 548, 621, 798
MboII GAAGA 1 cut(s) 299
MflI RGATCY 1 cut(s) 798
MhlI GDGCHC 2 cut(s) 30, 123
MluCI AATT 5 cut(s) 75, 498, 552, 682, 784
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 8 cut(s) 16, 169, 283, 391, 397, 603, 720, 755
Mph1103I ATGCAT 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 740
MseI TTAA 2 cut(s) 296, 365
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 1 cut(s) 771
MspR9I CCNGG 1 cut(s) 772
MwoI GCNNNNNNNGC 2 cut(s) 307, 715
NciI CCSGG 1 cut(s) 772
NdeII GATC 4 cut(s) 12, 548, 621, 798
NlaIII CATG 2 cut(s) 533, 629
NlaIV GGNNCC 2 cut(s) 135, 391
NmuCI GTSAC 2 cut(s) 413, 700
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 1 cut(s) 533
NspV TTCGAA 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 4 cut(s) 184, 473, 570, 589
PspN4I GGNNCC 2 cut(s) 135, 391
PsuI RGATCY 1 cut(s) 798
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
RseI CAYNNNNRTG 1 cut(s) 23
SaqAI TTAA 2 cut(s) 296, 365
Sau3AI GATC 4 cut(s) 12, 548, 621, 798
ScrFI CCNGG 1 cut(s) 772
SduI GDGCHC 2 cut(s) 30, 123
SetI ASST 9 cut(s) 27, 211, 267, 294, 402, 408, 420, 580, 766
SfaNI GCATC 2 cut(s) 349, 472
SfuI TTCGAA 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 5 cut(s) 75, 498, 552, 682, 784
SsiI CCGC 2 cut(s) 310, 506
SspMI CTAG 7 cut(s) 98, 218, 306, 486, 575, 723, 755
StyD4I CCNGG 1 cut(s) 770
TaaI ACNGT 1 cut(s) 740
TaiI ACGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 187, 634
TasI AATT 5 cut(s) 75, 498, 552, 682, 784
TatI WGTACW 1 cut(s) 599
TfiI GAWTC 4 cut(s) 184, 473, 570, 589
Tru1I TTAA 2 cut(s) 296, 365
Tru9I TTAA 2 cut(s) 296, 365
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 413, 700
Tsp45I GTSAC 2 cut(s) 413, 700
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 3 cut(s) 35, 196, 690
TspRI CASTG 1 cut(s) 430
VneI GTGCAC 1 cut(s) 119
XapI RAATTY 2 cut(s) 682, 784
XceI RCATGY 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 740
XspI CTAG 7 cut(s) 98, 218, 306, 486, 575, 723, 755
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.