Rw1G011370

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001235
Physical Location & Seq
Reverse (-)
25559367 .. 25560743
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011370.1

Sequence Viewer

Length: 1377 bp
ATGGCTATCCTCGATGAGACGACTTTCGAAATGATAAACCCATCTCGTTTCACTACCTTCACTTTCCCAAACCCTTGCGACTCCACCACCACCTCACTCCTCCGCGTCGCCGTTCTCGACTCGCCTTTCCAGCCCCCCGCCGACCCACCCCGAGTCGCCGCAATGCTCGTCCCCAAACACCGCCACTCCGACTGGATATTCTCCACCCACTCCGGCCATCTCCACCTCCTCCTCAGCTCCCCCGGCATCTCCCGCCTGATCCTCATCGGCGACAGCTCTCACCACTCGCCTCCAATCTACCGCCGTCCGCTCAAAAACGACGACACGTCGTGTGACGACGAACTCGCGGTGAGCTTGAAACCTCTCTTCCTTGCTTTATCTCCCAAGTCCTGCTTTAAACACGGCATTCCTGAGATACCCATTTTGAGTTATGAAGATAATTTGATTTCTAGTGTGGTTTTGGAGAAATGCGTTGGGTGTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGAGTGTGGTGGTGAGGTTTCAACGAGGGAGTTCAGGAGGCGTTTGAGGTTTAAAAGAATGCCCAATTTGATTCAGACGGAGGTGCGTATTGTTCCCAAAATGGGTTTTGGTTTGGATTGTGTAGGAATTGGACAAGTTGAGTTTAGGCTAGATGATAGTGTTTTAGTGCACTCTTATTTGGTTCCTATGGTCGCAAGTCTTAGCCTGGCTGCTTCTTACATTGACGGACAGATTCGAAGTGGGGTAAGGCCAAAAGCTTTGTGTGTAGGAGTTGGGGGTGGGGCTTTGCTTGGTTTCTTGAGAACCCTATTGGGTTTTCAGGTTGTGGGTGTGGAAGCCGATGAGGAGGTGTTAAGGCTTTCTAGGCGGTATTTTGGGCTGGACGATGGAGAGCATATCAAAGTTTGTGTTGGAGATGCATTAAAAGTTATTGATAAACTTGCTGGTGCCTGCGAGGTAGAGGTTGGTTGTGACGTGGGCAGTGATAATGATGTTGATACTAAGTTTGATGTGATTATGGTTGATTTGGATTCAAGTGATGCTTGGGACGGTCTAATTGCTCCGCCATTGGAGTTTGTTCAGAAGCATGTCCTTGTGTCAGCCAGATCAATTCTCTCTGAAAATGGAATCCTAGCTATAAATGTGATTCCTCCAAATACATCGTTTTACAAGACATTGATCCATGGGTTTCGAGATGTTTTCAGTGAGTTGTACGAAATAGATGTGGGAAATGGAGAAAATTTTATTCTTATTGCTGTGACATCTCCTCTCATGCCTTCTAGTGATTGTGAGAACTGTTTCCTCAACAAACTAGGAAAAGCTATATCTGGGGCATACTTGAATTCCATAAAGAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

458

Amino Acids

50.12

Weight (kDa)

5.16

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 962
AccBSI CCGCTC 1 cut(s) 310
AccII CGCG 2 cut(s) 105, 347
AclWI GGATC 2 cut(s) 253, 1189
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 2 cut(s) 1255, 1357
AdeI CACNNNGTG 1 cut(s) 330
AfaI GTAC 1 cut(s) 1229
AfiI CCNNNNNNNGG 1 cut(s) 617
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 4 cut(s) 358, 537, 1050, 1357
AhdI GACNNNNNGTC 1 cut(s) 325
AjiI CACGTC 2 cut(s) 327, 991
AjnI CCWGG 1 cut(s) 720
AluBI AGCT 6 cut(s) 237, 276, 354, 773, 1151, 1337
AluI AGCT 6 cut(s) 237, 276, 354, 773, 1151, 1337
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 1 cut(s) 11
Alw44I GTGCAC 1 cut(s) 683
AlwI GGATC 2 cut(s) 253, 1189
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 2 cut(s) 214, 764
ApaLI GTGCAC 1 cut(s) 683
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 2 cut(s) 1255, 1357
Asp700I GAANNNNTTC 1 cut(s) 1313
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 4 cut(s) 272, 361, 500, 539
AsuII TTCGAA 2 cut(s) 27, 751
AvaI CYCGRG 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 687
BanI GGYRCC 1 cut(s) 962
Bbv12I GWGCWC 1 cut(s) 687
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 712
BccI CCATC 3 cut(s) 49, 225, 896
BceAI ACGGC 3 cut(s) 95, 288, 418
BciT130I CCWGG 1 cut(s) 722
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 6 cut(s) 450, 665, 879, 1148, 1296, 1328
BglII AGATCT 1 cut(s) 1371
BisI GCNGC 2 cut(s) 159, 726
BlsI GCNGC 2 cut(s) 160, 727
Bme1390I CCNGG 2 cut(s) 243, 722
BmeRI GACNNNNNGTC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 150
BmgBI CACGTC 2 cut(s) 327, 991
BmiI GGNNCC 2 cut(s) 699, 964
BmrFI CCNGG 2 cut(s) 243, 722
BmsI GCATC 3 cut(s) 255, 922, 1045
Bpu10I CCTNAGC 1 cut(s) 233
Bpu14I TTCGAA 2 cut(s) 27, 751
BpuEI CTTGAG 1 cut(s) 835
BpuMI CCSGG 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 241, 1198
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 503, 533
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 2 cut(s) 241, 1198
BseGI GGATG 1 cut(s) 511
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 247, 402
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 5 cut(s) 89, 218, 221, 875, 1272
BseSI GKGCMC 1 cut(s) 687
BseXI GCAGC 1 cut(s) 712
Bsh1236I CGCG 2 cut(s) 105, 347
BshFI GGCC 2 cut(s) 216, 766
BshNI GGYRCC 1 cut(s) 962
BsiHKAI GWGCWC 1 cut(s) 687
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 2 cut(s) 213, 243
BslFI GGGAC 2 cut(s) 155, 1076
BslI CCNNNNNNNGG 1 cut(s) 617
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 2 cut(s) 155, 1076
BsmI GAATGC 2 cut(s) 405, 579
BsnI GGCC 2 cut(s) 216, 766
BsoBI CYCGRG 1 cut(s) 150
Bsp119I TTCGAA 2 cut(s) 27, 751
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 4 cut(s) 258, 1121, 1194, 1371
Bsp19I CCATGG 1 cut(s) 1198
BspANI GGCC 2 cut(s) 216, 766
BspCNI CTCAG 2 cut(s) 246, 403
BspFNI CGCG 2 cut(s) 105, 347
BspLI GGNNCC 2 cut(s) 699, 964
BspPI GGATC 2 cut(s) 253, 1189
BspT104I TTCGAA 2 cut(s) 27, 751
BspT107I GGYRCC 1 cut(s) 962
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 241, 1198
BssMI GATC 4 cut(s) 258, 1121, 1194, 1371
BssT1I CCWWGG 1 cut(s) 1198
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 2 cut(s) 1067, 1313
Bst6I CTCTTC 1 cut(s) 371
BstBI TTCGAA 2 cut(s) 27, 751
BstC8I GCNNGC 1 cut(s) 967
BstDEI CTNAG 4 cut(s) 233, 411, 716, 1017
BstDSI CCRYGG 1 cut(s) 1198
BstF5I GGATG 1 cut(s) 511
BstFNI CGCG 2 cut(s) 105, 347
BstKTI GATC 4 cut(s) 261, 1124, 1197, 1374
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 4 cut(s) 258, 1121, 1194, 1371
BstMWI GCNNNNNNNGC 4 cut(s) 130, 243, 252, 880
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 1 cut(s) 1106
BstSCI CCNGG 2 cut(s) 241, 720
BstSLI GKGCMC 1 cut(s) 687
BstUI CGCG 2 cut(s) 105, 347
BstV1I GCAGC 1 cut(s) 712
BstX2I RGATCY 1 cut(s) 1371
BstYI RGATCY 1 cut(s) 1371
BsuRI GGCC 2 cut(s) 216, 766
BtgI CCRYGG 1 cut(s) 1198
BtrI CACGTC 2 cut(s) 327, 991
BtsCI GGATG 1 cut(s) 511
BtsI GCAGTG 1 cut(s) 1003
BtsIMutI CAGTG 2 cut(s) 1003, 1225
Cac8I GCNNGC 1 cut(s) 967
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 1228
CviAII CATG 3 cut(s) 1103, 1199, 1288
CviQI GTAC 1 cut(s) 1228
DdeI CTNAG 4 cut(s) 233, 411, 716, 1017
DpnI GATC 4 cut(s) 260, 1123, 1196, 1373
DpnII GATC 4 cut(s) 258, 1121, 1194, 1371
DraI TTTAAA 2 cut(s) 397, 568
DraIII CACNNNGTG 1 cut(s) 330
DriI GACNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 371
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 371
EciI GGCGGA 1 cut(s) 1068
Eco130I CCWWGG 1 cut(s) 1198
Eco88I CYCGRG 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 1357
EcoRII CCWGG 1 cut(s) 720
EcoT14I CCWWGG 1 cut(s) 1198
EcoT22I ATGCAT 1 cut(s) 937
ErhI CCWWGG 1 cut(s) 1198
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 3 cut(s) 1106, 1202, 1291
FalI AAGNNNNNCTT 4 cut(s) 377, 409, 1042, 1074
FaqI GGGAC 2 cut(s) 155, 1076
FatI CATG 3 cut(s) 1102, 1198, 1287
FauI CCCGC 2 cut(s) 145, 260
Fnu4HI GCNGC 2 cut(s) 159, 726
FokI GGATG 1 cut(s) 518
Fsp4HI GCNGC 2 cut(s) 159, 726
FspBI CTAG 6 cut(s) 450, 665, 879, 1148, 1296, 1328
GluI GCNGC 2 cut(s) 159, 726
HaeIII GGCC 2 cut(s) 216, 766
HapII CCGG 2 cut(s) 213, 243
HgaI GACGC 1 cut(s) 94
Hin1II CATG 3 cut(s) 1106, 1202, 1291
HindIII AAGCTT 1 cut(s) 771
HinfI GANTC 8 cut(s) 80, 119, 153, 586, 748, 1046, 1143, 1162
HpaII CCGG 2 cut(s) 213, 243
HphI GGTGA 4 cut(s) 272, 361, 500, 539
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 4 cut(s) 190, 591, 1098, 1135
Hpy188III TCNNGA 5 cut(s) 116, 410, 550, 814, 1208
Hpy8I GTNNAC 1 cut(s) 685
Hpy99I CGWCG 4 cut(s) 110, 323, 331, 341
HpyAV CCTTC 2 cut(s) 67, 1302
HpyCH4III ACNGT 2 cut(s) 1067, 1313
HpyCH4IV ACGT 2 cut(s) 326, 990
HpyCH4V TGCA 2 cut(s) 685, 935
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 243, 252, 880
HpyF3I CTNAG 4 cut(s) 233, 411, 716, 1017
HpySE526I ACGT 2 cut(s) 326, 990
Hsp92II CATG 3 cut(s) 1106, 1202, 1291
Kzo9I GATC 4 cut(s) 258, 1121, 1194, 1371
LmnI GCTCC 2 cut(s) 242, 1081
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 3 cut(s) 255, 922, 1045
MaeI CTAG 6 cut(s) 450, 665, 879, 1148, 1296, 1328
MaeII ACGT 2 cut(s) 326, 990
MaeIII GTNAC 3 cut(s) 332, 986, 1273
MalI GATC 4 cut(s) 260, 1123, 1196, 1373
MbiI CCGCTC 1 cut(s) 310
MboI GATC 4 cut(s) 258, 1121, 1194, 1371
MboII GAAGA 2 cut(s) 358, 446
MflI RGATCY 1 cut(s) 1371
MhlI GDGCHC 1 cut(s) 687
MluCI AATT 7 cut(s) 439, 580, 642, 1071, 1125, 1255, 1357
MlyI GAGTC 3 cut(s) 74, 113, 162
MmeI TCCRAC 2 cut(s) 213, 907
Mph1103I ATGCAT 1 cut(s) 937
MroXI GAANNNNTTC 1 cut(s) 1313
MseI TTAA 4 cut(s) 396, 567, 869, 938
MspI CCGG 2 cut(s) 213, 243
MspR9I CCNGG 2 cut(s) 243, 722
Mva1269I GAATGC 2 cut(s) 405, 579
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 2 cut(s) 105, 347
MwoI GCNNNNNNNGC 4 cut(s) 130, 243, 252, 880
NciI CCSGG 1 cut(s) 243
NcoI CCATGG 1 cut(s) 1198
NdeII GATC 4 cut(s) 258, 1121, 1194, 1371
NlaIII CATG 3 cut(s) 1106, 1202, 1291
NlaIV GGNNCC 2 cut(s) 699, 964
NmuCI GTSAC 3 cut(s) 332, 986, 1273
NsiI ATGCAT 1 cut(s) 937
NspI RCATGY 1 cut(s) 1106
NspV TTCGAA 2 cut(s) 27, 751
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 2 cut(s) 405, 579
PdmI GAANNNNTTC 1 cut(s) 1313
PfeI GAWTC 5 cut(s) 586, 748, 1046, 1143, 1162
PkrI GCNGC 2 cut(s) 160, 727
PleI GAGTC 3 cut(s) 74, 113, 161
PpsI GAGTC 3 cut(s) 74, 113, 161
Psp6I CCWGG 1 cut(s) 720
PspGI CCWGG 1 cut(s) 720
PspN4I GGNNCC 2 cut(s) 699, 964
PsuI RGATCY 1 cut(s) 1371
RsaI GTAC 1 cut(s) 1229
RsaNI GTAC 1 cut(s) 1228
SaqAI TTAA 4 cut(s) 396, 567, 869, 938
SatI GCNGC 2 cut(s) 159, 726
Sau3AI GATC 4 cut(s) 258, 1121, 1194, 1371
SchI GAGTC 3 cut(s) 74, 113, 162
ScrFI CCNGG 2 cut(s) 243, 722
SduI GDGCHC 1 cut(s) 687
SfaNI GCATC 3 cut(s) 255, 922, 1045
SfuI TTCGAA 2 cut(s) 27, 751
SmlI CTYRAG 1 cut(s) 814
SmoI CTYRAG 1 cut(s) 814
Sse9I AATT 7 cut(s) 439, 580, 642, 1071, 1125, 1255, 1357
SspMI CTAG 6 cut(s) 450, 665, 879, 1148, 1296, 1328
StyD4I CCNGG 2 cut(s) 241, 720
StyI CCWWGG 1 cut(s) 1198
TaaI ACNGT 2 cut(s) 1067, 1313
TaiI ACGT 2 cut(s) 329, 993
TaqI TCGA 5 cut(s) 12, 27, 117, 751, 1207
TasI AATT 7 cut(s) 439, 580, 642, 1071, 1125, 1255, 1357
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 5 cut(s) 586, 748, 1046, 1143, 1162
Tru1I TTAA 4 cut(s) 396, 567, 869, 938
Tru9I TTAA 4 cut(s) 396, 567, 869, 938
TscAI CASTG 2 cut(s) 1003, 1225
TseFI GTSAC 3 cut(s) 332, 986, 1273
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 3 cut(s) 332, 986, 1273
TspDTI ATGAA 1 cut(s) 447
TspGWI ACGGA 2 cut(s) 608, 756
TspRI CASTG 2 cut(s) 1003, 1225
VneI GTGCAC 1 cut(s) 683
XapI RAATTY 2 cut(s) 1255, 1357
XceI RCATGY 1 cut(s) 1106
XmnI GAANNNNTTC 1 cut(s) 1313
XspI CTAG 6 cut(s) 450, 665, 879, 1148, 1296, 1328
Zsp2I ATGCAT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.