RLG00000029481

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001235
Physical Location & Seq
Forward (+)
39337584 .. 39342231
4648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029481

Sequence Viewer

Length: 594 bp
ATGCACCAAGCCTATCCACCCCGAGTCGCCGCAATGCTCGTCCCCAAACACCGCCACTCTGACTGGATATTCTCCACCCACTCCGGCCATCTCCGCCTCCACCTCCTCCTCAGCTCCACCGGCATCTCCCGCCTATTCTCATCGGCGACAGCTCTCACCACTCGCCTCCAATCTACCGCCGTCCGCTCAAAGACAACACTCCGTGTGACGACGAACTCAGGTTTGGTTTTGGAGAAGTGCGTTGGGTGTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGACTCTGGTGGTGAGGTTTCGAAGAGGGAGTTCAGGAGGCGTTTGAGATTTAGAAGAATGCCCAATTTGATTCAGACGGAGGTGCGTATTGTTCCCAAAATGGGTTTTGGTATGGATTGTGTGGGAATTGGACAAGTTGAGTTTAGGCTAGATGATAGTGTTTTAGTGCACTCTTATTTGGTTCCTATTGTGGCAAGTCTTAGCCTGGCTGCTCCTTATATTGAGGGTCGGATTCGAAGTGGGCAGCATGGGACGGCTGAGAATGGATGGGCTGAGCCACTGTATAAGACAATCTCACATCCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

198

Amino Acids

21.92

Weight (kDa)

9.71

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 186
AciI CCGC 6 cut(s) 30, 52, 94, 130, 177, 184
AcoI YGGCCR 1 cut(s) 85
AdeI CACNNNGTG 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 386
AjnI CCWGG 1 cut(s) 489
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 2 cut(s) 114, 152
AluI AGCT 2 cut(s) 114, 152
Alw21I GWGCWC 1 cut(s) 456
Alw44I GTGCAC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 1 cut(s) 85
ApaLI GTGCAC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 494, 529
AsuHPI GGTGA 3 cut(s) 148, 269, 308
AsuII TTCGAA 2 cut(s) 305, 520
AvaI CYCGRG 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 456
BbvCI CCTCAGC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 481, 541
BccI CCATC 2 cut(s) 96, 546
BceAI ACGGC 2 cut(s) 164, 555
BciT130I CCWGG 1 cut(s) 491
BfaI CTAG 2 cut(s) 434, 592
BisI GCNGC 3 cut(s) 30, 495, 530
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 3 cut(s) 31, 496, 531
Bme1390I CCNGG 1 cut(s) 491
BmeT110I CYCGRG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 272, 304
Bpu10I CCTNAGC 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 558
Bpu14I TTCGAA 2 cut(s) 305, 520
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 491
BseGI GGATG 3 cut(s) 280, 557, 583
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 4 cut(s) 124, 231, 534, 549
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 95, 98
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 2 cut(s) 481, 541
BshFI GGCC 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 21
BsiSI CCGG 2 cut(s) 84, 120
BslFI GGGAC 2 cut(s) 26, 550
BslI CCNNNNNNNGG 1 cut(s) 386
BsmFI GGGAC 2 cut(s) 26, 550
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 21
Bsp119I TTCGAA 2 cut(s) 305, 520
Bsp1286I GDGCHC 1 cut(s) 456
Bsp1720I GCTNAGC 1 cut(s) 558
BspACI CCGC 6 cut(s) 30, 52, 94, 130, 177, 184
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 4 cut(s) 123, 230, 535, 550
BspLI GGNNCC 1 cut(s) 468
BspT104I TTCGAA 2 cut(s) 305, 520
BsrBI CCGCTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 1 cut(s) 567
Bst6I CTCTTC 1 cut(s) 302
BstBI TTCGAA 2 cut(s) 305, 520
BstDEI CTNAG 5 cut(s) 110, 217, 485, 543, 558
BstF5I GGATG 3 cut(s) 280, 557, 583
BstMWI GCNNNNNNNGC 3 cut(s) 93, 120, 129
BstNI CCWGG 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 456
BstV1I GCAGC 2 cut(s) 481, 541
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 3 cut(s) 280, 557, 583
BtsIMutI CAGTG 1 cut(s) 563
Cfr10I RCCGGY 1 cut(s) 119
CviAII CATG 1 cut(s) 533
DdeI CTNAG 5 cut(s) 110, 217, 485, 543, 558
DraIII CACNNNGTG 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 489
FaeI CATG 1 cut(s) 536
FaiI YATR 4 cut(s) 398, 504, 534, 570
FaqI GGGAC 2 cut(s) 26, 550
FatI CATG 1 cut(s) 532
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 30, 495, 530
FokI GGATG 3 cut(s) 287, 564, 570
Fsp4HI GCNGC 3 cut(s) 30, 495, 530
FspBI CTAG 2 cut(s) 434, 592
GluI GCNGC 3 cut(s) 30, 495, 530
HaeIII GGCC 1 cut(s) 87
HapII CCGG 2 cut(s) 84, 120
Hin1II CATG 1 cut(s) 536
HinfI GANTC 4 cut(s) 24, 287, 355, 517
HpaII CCGG 2 cut(s) 84, 120
HphI GGTGA 3 cut(s) 148, 269, 308
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 3 cut(s) 61, 360, 516
Hpy188III TCNNGA 1 cut(s) 319
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 567
HpyCH4V TGCA 2 cut(s) 4, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 120, 129
HpyF3I CTNAG 5 cut(s) 110, 217, 485, 543, 558
Hsp92II CATG 1 cut(s) 536
LmnI GCTCC 2 cut(s) 119, 502
LpnPI CCDG 8 cut(s) 49, 97, 133, 204, 276, 304, 476, 503
Lsp1109I GCAGC 2 cut(s) 481, 541
LweI GCATC 1 cut(s) 132
MaeI CTAG 2 cut(s) 434, 592
MaeIII GTNAC 1 cut(s) 205
MbiI CCGCTC 1 cut(s) 186
MboII GAAGA 2 cut(s) 319, 351
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 2 cut(s) 349, 411
MlyI GAGTC 2 cut(s) 33, 281
MmeI TCCRAC 1 cut(s) 494
MspI CCGG 2 cut(s) 84, 120
MspR9I CCNGG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 3 cut(s) 93, 120, 129
NlaIII CATG 1 cut(s) 536
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 205
NspV TTCGAA 2 cut(s) 305, 520
PctI GAATGC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 355, 517
PkrI GCNGC 3 cut(s) 31, 496, 531
PleI GAGTC 2 cut(s) 32, 281
PpsI GAGTC 2 cut(s) 32, 281
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 468
SatI GCNGC 3 cut(s) 30, 495, 530
SchI GAGTC 2 cut(s) 33, 281
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 1 cut(s) 456
SetI ASST 6 cut(s) 105, 116, 154, 223, 303, 369
SfaNI GCATC 1 cut(s) 132
SfuI TTCGAA 2 cut(s) 305, 520
Sse9I AATT 2 cut(s) 349, 411
SsiI CCGC 6 cut(s) 30, 52, 94, 130, 177, 184
SspMI CTAG 2 cut(s) 434, 592
StyD4I CCNGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 567
TaqI TCGA 2 cut(s) 305, 520
TasI AATT 2 cut(s) 349, 411
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 2 cut(s) 355, 517
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 494, 529
Tsp45I GTSAC 1 cut(s) 205
TspGWI ACGGA 2 cut(s) 191, 377
TspRI CASTG 1 cut(s) 570
VneI GTGCAC 1 cut(s) 452
XspI CTAG 2 cut(s) 434, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.