Rw0G021360

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00982
OG0001235
Physical Location & Seq
Reverse (-)
9313 .. 11203
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021360.1

Sequence Viewer

Length: 615 bp
ATGGCGCAACCTGAGAATCATGTCGTCCTGGACCAGACGTTGAAGCCCTTTTACCAGAGGGCCTCCGAAGCCGAGGTTGTGGGTGTGGAAGCTGATGAGGAGGTGCTAAGGGTTTCTAGGCGGTATTTTGGGCTAGAAGATGGAGAGCATATCAAAATTTGTGTTGGAGATGTATTAAAAGTTTTTGATAGACTTGTTGGTGCCTGCGAGGTAGAGGTTGGTTGTGACGTGGGCAGTGCCAATGATGTTGATACTAAATTTGATGTGATTATGGTTGATTTGGATTCAACTGATGCTAGGGATGGTCTAATTGCTCCGCCATTGGAGTTTGTTGGGAAGCATGTCCTTATGTCAGCCAGATCAATTCTCTCTGATAATGGAATCCTAGCTATAAATGTGATTCCTCCAAATACATCAATTTACAAGACATTGATCCATGAGTTTCGAGATGTTTTTTATGAGTTATACGAAATAGATGTGGGAAATGGGGAATATTTTATTCTTGTTGCTGTGGCATCTCCTCTCATGCCTTCTAGTGATTGTGACAACTGTTTCCTCAACAAACTAGGAAAAGCTATATCTGGGGTATACTTGAATTCCATAAAGAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

204

Amino Acids

22.47

Weight (kDa)

4.49

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 588
AciI CCGC 2 cut(s) 121, 317
AclWI GGATC 1 cut(s) 427
AcsI RAATTY 3 cut(s) 156, 257, 595
AgsI TTSAA 3 cut(s) 43, 288, 595
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 3 cut(s) 92, 389, 575
AluI AGCT 3 cut(s) 92, 389, 575
AlwI GGATC 1 cut(s) 427
AoxI GGCC 1 cut(s) 60
ApoI RAATTY 3 cut(s) 156, 257, 595
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 31, 60
AvaII GGWCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BccI CCATC 2 cut(s) 134, 296
BciT130I CCWGG 1 cut(s) 29
BfaI CTAG 6 cut(s) 117, 134, 297, 386, 534, 566
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 31, 60
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 283, 524
Bpu10I CCTNAGC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 307
BseRI GAGGAG 2 cut(s) 113, 510
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 200
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 359, 432
BspACI CCGC 2 cut(s) 121, 317
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 1 cut(s) 427
BspT107I GGYRCC 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 359, 432
BssNAI GTATAC 1 cut(s) 589
Bst1107I GTATAC 1 cut(s) 589
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 12, 107
BstF5I GGATG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 362, 435
BstMBI GATC 2 cut(s) 359, 432
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 589
BsuRI GGCC 1 cut(s) 62
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 31, 60
CviAII CATG 4 cut(s) 20, 341, 437, 526
CviJI RGCY 8 cut(s) 46, 62, 71, 92, 133, 356, 389, 575
CviKI_1 RGCY 8 cut(s) 46, 62, 71, 92, 133, 356, 389, 575
DdeI CTNAG 2 cut(s) 12, 107
DpnI GATC 2 cut(s) 361, 434
DpnII GATC 2 cut(s) 359, 432
EciI GGCGGA 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 4 cut(s) 23, 344, 440, 529
FatI CATG 4 cut(s) 19, 340, 436, 525
FblI GTMKAC 1 cut(s) 588
FokI GGATG 1 cut(s) 314
FspBI CTAG 6 cut(s) 117, 134, 297, 386, 534, 566
GlaI GCGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 62
HhaI GCGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 23, 344, 440, 529
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 4 cut(s) 16, 284, 381, 400
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 2 cut(s) 67, 373
Hpy188III TCNNGA 1 cut(s) 446
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 2 cut(s) 38, 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 12, 107
HpySE526I ACGT 2 cut(s) 38, 228
Hsp92II CATG 4 cut(s) 23, 344, 440, 529
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 2 cut(s) 359, 432
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 14, 24, 41, 47, 68, 217, 370, 567
LweI GCATC 2 cut(s) 283, 524
MaeI CTAG 6 cut(s) 117, 134, 297, 386, 534, 566
MaeII ACGT 2 cut(s) 38, 228
MaeIII GTNAC 2 cut(s) 224, 542
MalI GATC 2 cut(s) 361, 434
MboI GATC 2 cut(s) 359, 432
MboII GAAGA 1 cut(s) 149
MluCI AATT 6 cut(s) 156, 257, 309, 363, 417, 595
MmeI TCCRAC 1 cut(s) 145
MseI TTAA 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 2 cut(s) 359, 432
NlaIII CATG 4 cut(s) 23, 344, 440, 529
NlaIV GGNNCC 1 cut(s) 202
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 224, 542
NspI RCATGY 1 cut(s) 344
PfeI GAWTC 4 cut(s) 16, 284, 381, 400
PfoI TCCNGGA 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 2 cut(s) 31, 60
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 2 cut(s) 359, 432
Sau96I GGNCC 2 cut(s) 31, 60
ScrFI CCNGG 1 cut(s) 29
SfaNI GCATC 2 cut(s) 283, 524
SinI GGWCC 1 cut(s) 31
Sse9I AATT 6 cut(s) 156, 257, 309, 363, 417, 595
SsiI CCGC 2 cut(s) 121, 317
SspI AATATT 1 cut(s) 494
SspMI CTAG 6 cut(s) 117, 134, 297, 386, 534, 566
StyD4I CCNGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 2 cut(s) 41, 231
TaqI TCGA 1 cut(s) 445
TasI AATT 6 cut(s) 156, 257, 309, 363, 417, 595
TfiI GAWTC 4 cut(s) 16, 284, 381, 400
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 2 cut(s) 224, 542
Tsp45I GTSAC 2 cut(s) 224, 542
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 3 cut(s) 156, 257, 595
XceI RCATGY 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 6 cut(s) 117, 134, 297, 386, 534, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.