Rorug01G0112400

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001235
Physical Location & Seq
Forward (+)
19978045 .. 19983176
5132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0112400.1

Sequence Viewer

Length: 879 bp
ATGGTATTGAGCTTCATTATTCGCTTCCTGGATGCTCTAGTGTTTTTTCTTCGCAATGATGATGATTTCCAGATGCTGTTTAGCGATAGCTGCTCTGGTATTGTGGATGAAGATGATTACCCCACTGAGGCATTTAGGACTGAAGTTCAAAAGTCTTACATGTCAAATGAGTGGGCTAGTTACAATCAATATGTAGGGCAGAAATTTCGTGGCAGTTCCCCTGAGTTTCGAGACAAGCTCAGAAAGTATGTTATTGAAGTTGGGTTCAGCTTTGTGTTTATTAGAAATGATTGGGACAGAATTCATGCGGTTTGTTCCAATTGGGGAACCGAAGGATGTGAGTGGAACGTCTGTGGTTATGTATTGCCTGCAAATGGATGCTTTATTATTGGTGAGTTGGACAATGTCCACTCTTGCAAAGGTGTTCTTCGAAAGCAAAAACATGAGCTTTTGGGATCGAAAATTGTCAAGACATGTATTGAAAAGGACATTAGCTATAACTTGTCATTGAAGCCGACGAAAATTATCAGCAAGTTCAAGTCAGCTTATGGGTTTGATATATCGTACAAGGTTGCTTGGAAAGCAAAGCAAAAGGCTAGGGAAATGATTTACGGTTCTGAGGCTGATTCGTTTAACATGCTAACTTGGTATAGGGAAGTTGTGTTTGAGACTAACCCGGGATCTTCTTTTGTTTTGGAAGTTGATCCATTGAGTAATCGGTTTCAGAGGCTTTTCCTAGCTTATGCAGGCTGCATTCAAGGCTTTGAATTTTGTCTTCCCGTGTTGTATGTCGATGGCACTTTTGGGAAGAGTGTCTACAAGGGGCAGATTCTTTGTGCAACCGGAAAGAATGGAAACCATGATTTCAGCTACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

292

Amino Acids

33.59

Weight (kDa)

6.45

Isoelectric Point (pI)

21.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 65 - 130 8.2e-10 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 816
AciI CCGC 1 cut(s) 308
AclWI GGATC 3 cut(s) 463, 688, 698
AcsI RAATTY 3 cut(s) 203, 300, 767
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 2 cut(s) 127, 374
AflIII ACRYGT 2 cut(s) 159, 473
AgsI TTSAA 7 cut(s) 149, 257, 482, 511, 538, 758, 767
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 9 cut(s) 12, 90, 238, 270, 448, 495, 545, 740, 870
AluI AGCT 9 cut(s) 12, 90, 238, 270, 448, 495, 545, 740, 870
Alw26I GTCTC 2 cut(s) 225, 662
AlwI GGATC 3 cut(s) 463, 688, 698
AlwNI CAGNNNCTG 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 676
ApeKI GCWGC 2 cut(s) 90, 750
ApoI RAATTY 3 cut(s) 203, 300, 767
AsuC2I CCSGG 2 cut(s) 677, 678
AsuHPI GGTGA 1 cut(s) 404
AsuII TTCGAA 1 cut(s) 430
AvaI CYCGRG 1 cut(s) 676
BarI GAAGNNNNNNTAC 2 cut(s) 800, 832
BbsI GAAGAC 1 cut(s) 767
BbvI GCAGC 2 cut(s) 77, 737
BccI CCATC 1 cut(s) 788
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 2 cut(s) 677, 678
BcoDI GTCTC 2 cut(s) 225, 662
BfaI CTAG 4 cut(s) 38, 177, 597, 737
BisI GCNGC 2 cut(s) 91, 751
BlsI GCNGC 2 cut(s) 92, 752
Bme1390I CCNGG 3 cut(s) 29, 677, 678
BmeT110I CYCGRG 1 cut(s) 676
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 3 cut(s) 29, 677, 678
BmsI GCATC 3 cut(s) 22, 63, 368
BpiI GAAGAC 1 cut(s) 767
BplI GAGNNNNNCTC 2 cut(s) 222, 254
Bpu14I TTCGAA 1 cut(s) 430
BpuMI CCSGG 2 cut(s) 677, 678
BsaJI CCNNGG 1 cut(s) 676
BsaWI WCCGGW 1 cut(s) 842
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 374
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 676
BseGI GGATG 4 cut(s) 37, 112, 341, 383
BseLI CCNNNNNNNGG 2 cut(s) 127, 374
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 4 cut(s) 117, 213, 253, 609
BseXI GCAGC 2 cut(s) 77, 737
BsiHKCI CYCGRG 1 cut(s) 676
BsiSI CCGG 2 cut(s) 677, 843
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 127, 374
BsmAI GTCTC 2 cut(s) 225, 662
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 753
BsoBI CYCGRG 1 cut(s) 676
Bsp119I TTCGAA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 455, 680, 703
BspACI CCGC 1 cut(s) 308
BspCNI CTCAG 4 cut(s) 118, 214, 252, 610
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 3 cut(s) 463, 688, 698
BspT104I TTCGAA 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 676
BssMI GATC 3 cut(s) 455, 680, 703
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 614
Bst6I CTCTTC 1 cut(s) 803
BstBI TTCGAA 1 cut(s) 430
BstC8I GCNNGC 2 cut(s) 369, 748
BstDEI CTNAG 4 cut(s) 126, 222, 239, 618
BstF5I GGATG 4 cut(s) 37, 112, 341, 383
BstKTI GATC 3 cut(s) 458, 683, 706
BstMAI GTCTC 2 cut(s) 225, 662
BstMBI GATC 3 cut(s) 455, 680, 703
BstMWI GCNNNNNNNGC 3 cut(s) 90, 581, 759
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 3 cut(s) 163, 477, 640
BstSCI CCNGG 3 cut(s) 27, 675, 676
BstV1I GCAGC 2 cut(s) 77, 737
BstV2I GAAGAC 1 cut(s) 767
BstX2I RGATCY 1 cut(s) 680
BstYI RGATCY 1 cut(s) 680
BtsCI GGATG 4 cut(s) 37, 112, 341, 383
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 369, 748
CaiI CAGNNNCTG 1 cut(s) 76
Cfr9I CCCGGG 1 cut(s) 676
Csp6I GTAC 1 cut(s) 565
CviAII CATG 6 cut(s) 160, 305, 443, 474, 637, 860
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 4 cut(s) 126, 222, 239, 618
DpnI GATC 3 cut(s) 457, 682, 705
DpnII GATC 3 cut(s) 455, 680, 703
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 6 cut(s) 163, 308, 446, 477, 640, 863
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 308
FatI CATG 6 cut(s) 159, 304, 442, 473, 636, 859
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 2 cut(s) 91, 751
FokI GGATG 4 cut(s) 44, 119, 348, 390
Fsp4HI GCNGC 2 cut(s) 91, 751
FspBI CTAG 4 cut(s) 38, 177, 597, 737
GluI GCNGC 2 cut(s) 91, 751
HapII CCGG 2 cut(s) 677, 843
Hin1II CATG 6 cut(s) 163, 308, 446, 477, 640, 863
HinfI GANTC 2 cut(s) 626, 829
HpaII CCGG 2 cut(s) 677, 843
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 409, 817
Hpy188I TCNGA 3 cut(s) 242, 619, 726
Hpy188III TCNNGA 3 cut(s) 70, 230, 469
Hpy8I GTNNAC 2 cut(s) 409, 817
Hpy99I CGWCG 1 cut(s) 520
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 1 cut(s) 614
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 5 cut(s) 371, 417, 746, 753, 839
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 581, 759
HpyF3I CTNAG 4 cut(s) 126, 222, 239, 618
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 6 cut(s) 163, 308, 446, 477, 640, 863
Kzo9I GATC 3 cut(s) 455, 680, 703
LpnPI CCDG 9 cut(s) 14, 41, 81, 83, 234, 381, 690, 732, 856
Lsp1109I GCAGC 2 cut(s) 77, 737
LweI GCATC 3 cut(s) 22, 63, 368
MaeI CTAG 4 cut(s) 38, 177, 597, 737
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 457, 682, 705
MboI GATC 3 cut(s) 455, 680, 703
MboII GAAGA 6 cut(s) 41, 122, 419, 675, 767, 820
MfeI CAATTG 1 cut(s) 319
MflI RGATCY 1 cut(s) 680
MluCI AATT 6 cut(s) 203, 300, 319, 462, 522, 767
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 3 cut(s) 121, 613, 720
MseI TTAA 1 cut(s) 633
MspI CCGG 2 cut(s) 677, 843
MspR9I CCNGG 3 cut(s) 29, 677, 678
MunI CAATTG 1 cut(s) 319
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 90, 581, 759
NciI CCSGG 2 cut(s) 677, 678
NdeII GATC 3 cut(s) 455, 680, 703
NlaIII CATG 6 cut(s) 163, 308, 446, 477, 640, 863
NlaIV GGNNCC 1 cut(s) 328
NspI RCATGY 3 cut(s) 163, 477, 640
NspV TTCGAA 1 cut(s) 430
PciI ACATGT 2 cut(s) 159, 473
PctI GAATGC 1 cut(s) 753
PfeI GAWTC 2 cut(s) 626, 829
PflFI GACNNNGTC 1 cut(s) 404
PfoI TCCNGGA 1 cut(s) 27
PkrI GCNGC 2 cut(s) 92, 752
PscI ACATGT 2 cut(s) 159, 473
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 680
PsyI GACNNNGTC 1 cut(s) 404
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 2 cut(s) 91, 751
Sau3AI GATC 3 cut(s) 455, 680, 703
ScrFI CCNGG 3 cut(s) 29, 677, 678
SfaNI GCATC 3 cut(s) 22, 63, 368
SfuI TTCGAA 1 cut(s) 430
SmaI CCCGGG 1 cut(s) 678
Sse9I AATT 6 cut(s) 203, 300, 319, 462, 522, 767
SsiI CCGC 1 cut(s) 308
SspMI CTAG 4 cut(s) 38, 177, 597, 737
StyD4I CCNGG 3 cut(s) 27, 675, 676
TaaI ACNGT 1 cut(s) 614
TaiI ACGT 1 cut(s) 351
TaqI TCGA 4 cut(s) 229, 430, 458, 792
TasI AATT 6 cut(s) 203, 300, 319, 462, 522, 767
TfiI GAWTC 2 cut(s) 626, 829
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 1 cut(s) 130
TseI GCWGC 2 cut(s) 90, 750
TspDTI ATGAA 3 cut(s) 4, 123, 293
TspMI CCCGGG 1 cut(s) 676
TspRI CASTG 1 cut(s) 130
Tth111I GACNNNGTC 1 cut(s) 404
XapI RAATTY 3 cut(s) 203, 300, 767
XceI RCATGY 3 cut(s) 163, 477, 640
XmaI CCCGGG 1 cut(s) 676
XmiI GTMKAC 1 cut(s) 816
XspI CTAG 4 cut(s) 38, 177, 597, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.