Rorug01G0119900

Methyltransferase-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
20963839 .. 20964390
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0119900.1

Sequence Viewer

Length: 552 bp
ATGCTCAACTTCTCAGCCTTCCTGAATAATGAAGGTCTTATGTCTCTACAGGCACATGGACTACCTTATACTTGGACGAACAACCATAATGATGAAACTTTAATTTATGAGAGACTCGATAAAGCTTGTGTGAATGCTGCTTTTCTAAACAATTTTGTACATGTTCATTTAGAGAATCTTCCCATTATTGGTTTGGATCATGGACTTATTTGCTTGACAATTATGAATAATAAGGAAAAGAAAGGTAAGACTTTCAAGTTTGAAGCCATGTGGTTATCCCATATGGACTTCAAGCCCTTGGTACAGAATATTTGGAATCAAAGAAGGGATACTAGCCCTATGCTAAATTTCATTACTATTAGAAATCAATTTTGCCATCAGGCAAAGGTTTGGAATAAAAATGTCTTCGGTGACATTTTTAGAAGGATCGAGAACCTCAATGACAGGTGTAAAGATATCCAAAATCAATTGATCTTCTCACCATCTTCTACTTTCTTACATGAACAACACTACCTGATCACAACAGAACTGCTACAATGCTATAGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

21.66

Weight (kDa)

7.11

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 204, 434
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 2 cut(s) 159, 303
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 3 cut(s) 256, 263, 292
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 48, 106
AlwI GGATC 2 cut(s) 204, 434
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 422, 471
BbsI GAAGAC 1 cut(s) 397
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 384, 490
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 1 cut(s) 516
BcoDI GTCTC 2 cut(s) 48, 106
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 2 cut(s) 47, 541
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 2 cut(s) 48, 106
BsmI GAATGC 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 4 cut(s) 196, 426, 471, 516
BspCNI CTCAG 1 cut(s) 26
BspPI GGATC 2 cut(s) 204, 434
BsrGI TGTACA 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 4 cut(s) 196, 426, 471, 516
BssT1I CCWWGG 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 13
BstKTI GATC 4 cut(s) 199, 429, 474, 519
BstMAI GTCTC 2 cut(s) 48, 106
BstMBI GATC 4 cut(s) 196, 426, 471, 516
BstNSI RCATGY 1 cut(s) 164
BstSFI CTRYAG 2 cut(s) 47, 541
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 397
BsuI GTATCC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 158, 302
CviAII CATG 5 cut(s) 56, 161, 200, 268, 500
CviJI RGCY 5 cut(s) 17, 125, 266, 295, 336
CviKI_1 RGCY 5 cut(s) 17, 125, 266, 295, 336
CviQI GTAC 2 cut(s) 158, 302
DdeI CTNAG 1 cut(s) 13
DpnI GATC 4 cut(s) 198, 428, 473, 518
DpnII GATC 4 cut(s) 196, 426, 471, 516
Eco130I CCWWGG 1 cut(s) 297
Eco32I GATATC 1 cut(s) 457
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 5 cut(s) 59, 164, 203, 271, 503
FatI CATG 5 cut(s) 55, 160, 199, 267, 499
FauNDI CATATG 1 cut(s) 282
FbaI TGATCA 1 cut(s) 516
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 333
GluI GCNGC 1 cut(s) 138
Hin1II CATG 5 cut(s) 59, 164, 203, 271, 503
HindIII AAGCTT 1 cut(s) 123
HinfI GANTC 3 cut(s) 114, 175, 316
HphI GGTGA 2 cut(s) 422, 471
Hpy188III TCNNGA 2 cut(s) 22, 430
HpyAV CCTTC 4 cut(s) 26, 28, 318, 417
HpyF3I CTNAG 1 cut(s) 13
Hsp92II CATG 5 cut(s) 59, 164, 203, 271, 503
Ksp22I TGATCA 1 cut(s) 516
Kzo9I GATC 4 cut(s) 196, 426, 471, 516
LpnPI CCDG 5 cut(s) 35, 35, 365, 430, 527
Lsp1109I GCAGC 1 cut(s) 124
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 410
MalI GATC 4 cut(s) 198, 428, 473, 518
MboI GATC 4 cut(s) 196, 426, 471, 516
MboII GAAGA 4 cut(s) 170, 397, 466, 477
MfeI CAATTG 1 cut(s) 467
MluCI AATT 6 cut(s) 102, 151, 219, 346, 368, 467
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 1 cut(s) 446
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 90
MunI CAATTG 1 cut(s) 467
Mva1269I GAATGC 1 cut(s) 139
NdeI CATATG 1 cut(s) 282
NdeII GATC 4 cut(s) 196, 426, 471, 516
NlaIII CATG 5 cut(s) 59, 164, 203, 271, 503
NmuCI GTSAC 1 cut(s) 410
NspI RCATGY 1 cut(s) 164
PciI ACATGT 1 cut(s) 160
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 175, 316
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PscI ACATGT 1 cut(s) 160
RsaI GTAC 2 cut(s) 159, 303
RsaNI GTAC 2 cut(s) 158, 302
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 4 cut(s) 196, 426, 471, 516
SchI GAGTC 1 cut(s) 108
SetI ASST 8 cut(s) 37, 67, 127, 247, 390, 438, 449, 516
SfcI CTRYAG 2 cut(s) 47, 541
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 6 cut(s) 102, 151, 219, 346, 368, 467
SspI AATATT 1 cut(s) 310
SspMI CTAG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 297
TaqI TCGA 2 cut(s) 117, 429
TasI AATT 6 cut(s) 102, 151, 219, 346, 368, 467
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 2 cut(s) 175, 316
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 6 cut(s) 45, 108, 155, 239, 340, 516
XapI RAATTY 1 cut(s) 346
XceI RCATGY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.