Rmu_sc0006746.1_g000007

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006746.1
OG0001235
Physical Location & Seq
Forward (+)
53220 .. 54086
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006746.1_g000007.1.cds

Sequence Viewer

Length: 867 bp
atggctatcctcgataataccactttcgaaatcataaacccatatcgtttcattacctttacttttccaaacccttcggactccaccacctcactcctccgcgtcgccgttctcgactcgcctttccaactcgccggcgacccacctcgagtagccggaatgctcgtccctaaacaccgccactccgactggatattctccacccactccggccatctccagctcctcctcagctctcccggcatctcccgcctaattttcattggcgacagctctcacgactcgccgccaatctaccgccatcctcccaaagacgacgcgtcgtgtgacgacgaactcggtgtgagcctgaaacctctctttcttgctttatctcccaagtcctgctttaaacacggcattcctgagatacccattttgagttaccaagataatttgatttctagtttggttttggagaaatgcgttgggtgtttggttggtgaaatggtggtggaggatgtggagattgactctggtggtgaggtttcaaagagggagttcaggaggcgtttgaggtttgaaagaatgccctatgtgatccagacggaggtgcgcattgttcccaaaatgggttttggtttggattgtgtgggaattagacaagttgagtttaggctagatgatagtgttttagtgcactcttatttggttcctatggtcgcaagtcttagcctggctgcttcttacattgacggacggattcgaagtcgggtaaggccaaaagctttgtgtttaggagttgggggtggggctttgcttggtttcttgaaaacccaattggattttcaggtcgtgggtgtggaagccgatgaagaggtgctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

288

Amino Acids

31.86

Weight (kDa)

5.76

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 596
AccII CGCG 2 cut(s) 102, 320
AciI CCGC 5 cut(s) 100, 178, 250, 287, 298
AclWI GGATC 1 cut(s) 574
AcoI YGGCCR 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 589, 611
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 3 cut(s) 531, 563, 811
AhdI GACNNNNNGTC 1 cut(s) 319
AjnI CCWGG 1 cut(s) 714
AjuI GAANNNNNNNTTGG 4 cut(s) 803, 810, 835, 842
AluBI AGCT 4 cut(s) 223, 234, 273, 767
AluI AGCT 4 cut(s) 223, 234, 273, 767
Alw21I GWGCWC 2 cut(s) 681, 864
Alw44I GTGCAC 1 cut(s) 677
AlwI GGATC 1 cut(s) 574
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 2 cut(s) 211, 758
ApaLI GTGCAC 1 cut(s) 677
ApeKI GCWGC 1 cut(s) 719
AspLEI GCGC 1 cut(s) 597
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 494, 533
AsuII TTCGAA 2 cut(s) 27, 745
AvaI CYCGRG 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 681
Bbv12I GWGCWC 2 cut(s) 681, 864
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 706
BccI CCATC 2 cut(s) 222, 309
BceAI ACGGC 2 cut(s) 92, 412
BciT130I CCWGG 1 cut(s) 716
BcnI CCSGG 1 cut(s) 240
BfaI CTAG 3 cut(s) 444, 659, 865
BisI GCNGC 2 cut(s) 287, 720
BlsI GCNGC 2 cut(s) 288, 721
Bme1390I CCNGG 2 cut(s) 240, 716
BmeRI GACNNNNNGTC 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 693
BmrFI CCNGG 2 cut(s) 240, 716
BmsI GCATC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 230
Bpu14I TTCGAA 2 cut(s) 27, 745
BpuMI CCSGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 611
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 716
BseGI GGATG 2 cut(s) 301, 505
BseLI CCNNNNNNNGG 2 cut(s) 589, 611
BseMII CTCAG 2 cut(s) 244, 396
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 3 cut(s) 86, 215, 218
BseSI GKGCMC 1 cut(s) 681
BseXI GCAGC 1 cut(s) 706
Bsh1236I CGCG 2 cut(s) 102, 320
BshFI GGCC 2 cut(s) 213, 760
BsiHKAI GWGCWC 2 cut(s) 681, 864
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 4 cut(s) 135, 156, 210, 240
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 589, 611
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 3 cut(s) 165, 399, 573
BsnI GGCC 2 cut(s) 213, 760
BsoBI CYCGRG 1 cut(s) 147
Bsp119I TTCGAA 2 cut(s) 27, 745
Bsp1286I GDGCHC 2 cut(s) 681, 864
Bsp143I GATC 1 cut(s) 579
BspACI CCGC 5 cut(s) 100, 178, 250, 287, 298
BspANI GGCC 2 cut(s) 213, 760
BspCNI CTCAG 2 cut(s) 243, 397
BspFNI CGCG 2 cut(s) 102, 320
BspLI GGNNCC 1 cut(s) 693
BspPI GGATC 1 cut(s) 574
BspT104I TTCGAA 2 cut(s) 27, 745
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 134
BssMI GATC 1 cut(s) 579
Bst2UI CCWGG 1 cut(s) 716
Bst6I CTCTTC 1 cut(s) 849
BstBI TTCGAA 2 cut(s) 27, 745
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 3 cut(s) 230, 405, 710
BstF5I GGATG 2 cut(s) 301, 505
BstFNI CGCG 2 cut(s) 102, 320
BstHHI GCGC 1 cut(s) 597
BstKTI GATC 1 cut(s) 582
BstMBI GATC 1 cut(s) 579
BstMWI GCNNNNNNNGC 2 cut(s) 240, 249
BstNI CCWGG 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 238, 714
BstSLI GKGCMC 1 cut(s) 681
BstUI CGCG 2 cut(s) 102, 320
BstV1I GCAGC 1 cut(s) 706
BsuRI GGCC 2 cut(s) 213, 760
BtsCI GGATG 2 cut(s) 301, 505
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 597
Cfr10I RCCGGY 1 cut(s) 134
CseI GACGC 3 cut(s) 91, 309, 326
DdeI CTNAG 3 cut(s) 230, 405, 710
DpnI GATC 1 cut(s) 581
DpnII GATC 1 cut(s) 579
DraI TTTAAA 1 cut(s) 391
DriI GACNNNNNGTC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 849
Eam1105I GACNNNNNGTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 849
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 714
FaiI YATR 4 cut(s) 35, 43, 576, 698
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 152
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 287, 720
FokI GGATG 2 cut(s) 288, 512
Fsp4HI GCNGC 2 cut(s) 287, 720
FspAI RTGCGCAY 1 cut(s) 596
FspBI CTAG 3 cut(s) 444, 659, 865
FspI TGCGCA 1 cut(s) 596
GlaI GCGC 1 cut(s) 596
GluI GCNGC 2 cut(s) 287, 720
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 2 cut(s) 213, 760
HapII CCGG 4 cut(s) 135, 156, 210, 240
HgaI GACGC 3 cut(s) 91, 309, 326
HhaI GCGC 1 cut(s) 597
Hin6I GCGC 1 cut(s) 595
HinP1I GCGC 1 cut(s) 595
HindIII AAGCTT 1 cut(s) 765
HinfI GANTC 5 cut(s) 80, 116, 281, 512, 742
HpaII CCGG 4 cut(s) 135, 156, 210, 240
HphI GGTGA 2 cut(s) 494, 533
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 2 cut(s) 79, 187
Hpy188III TCNNGA 6 cut(s) 113, 278, 404, 544, 583, 808
Hpy8I GTNNAC 1 cut(s) 679
Hpy99I CGWCG 4 cut(s) 107, 320, 325, 335
HpyAV CCTTC 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 249
HpyF3I CTNAG 3 cut(s) 230, 405, 710
HspAI GCGC 1 cut(s) 595
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 579
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 1 cut(s) 252
MaeI CTAG 3 cut(s) 444, 659, 865
MaeIII GTNAC 2 cut(s) 326, 422
MalI GATC 1 cut(s) 581
MboI GATC 1 cut(s) 579
MboII GAAGA 1 cut(s) 866
MfeI CAATTG 1 cut(s) 818
MhlI GDGCHC 2 cut(s) 681, 864
MluCI AATT 4 cut(s) 255, 433, 636, 818
MluI ACGCGT 1 cut(s) 318
MlyI GAGTC 4 cut(s) 74, 110, 275, 506
MmeI TCCRAC 2 cut(s) 151, 210
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 1 cut(s) 390
MspI CCGG 4 cut(s) 135, 156, 210, 240
MspR9I CCNGG 2 cut(s) 240, 716
MunI CAATTG 1 cut(s) 818
Mva1269I GAATGC 3 cut(s) 165, 399, 573
MvaI CCWGG 1 cut(s) 716
MvnI CGCG 2 cut(s) 102, 320
MwoI GCNNNNNNNGC 2 cut(s) 240, 249
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 1 cut(s) 240
NdeII GATC 1 cut(s) 579
NgoMIV GCCGGC 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 693
NmuCI GTSAC 1 cut(s) 326
NsbI TGCGCA 1 cut(s) 596
NspV TTCGAA 2 cut(s) 27, 745
PaeR7I CTCGAG 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 3 cut(s) 165, 399, 573
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 742
PkrI GCNGC 2 cut(s) 288, 721
PleI GAGTC 4 cut(s) 74, 110, 275, 506
PpsI GAGTC 4 cut(s) 74, 110, 275, 506
Psp6I CCWGG 1 cut(s) 714
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 1 cut(s) 693
PspXI VCTCGAGB 1 cut(s) 147
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 287, 720
Sau3AI GATC 1 cut(s) 579
SchI GAGTC 4 cut(s) 74, 110, 275, 506
ScrFI CCNGG 2 cut(s) 240, 716
SduI GDGCHC 2 cut(s) 681, 864
SfaNI GCATC 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 147
SfuI TTCGAA 2 cut(s) 27, 745
SgrAI CRCCGGYG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 4 cut(s) 255, 433, 636, 818
SsiI CCGC 5 cut(s) 100, 178, 250, 287, 298
SspMI CTAG 3 cut(s) 444, 659, 865
StyD4I CCNGG 2 cut(s) 238, 714
TaqI TCGA 5 cut(s) 12, 27, 114, 148, 745
TasI AATT 4 cut(s) 255, 433, 636, 818
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 1 cut(s) 742
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 1 cut(s) 719
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 40, 250, 867
TspGWI ACGGA 3 cut(s) 602, 750, 754
VneI GTGCAC 1 cut(s) 677
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 3 cut(s) 444, 659, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.