Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001235

Physical Location & Seq

Genomic Coordinates Reverse (-)

24805666 .. 24806572

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGACTATCATCGATGAGACGACTTTCGAAATGTTAAACCCATCTCGTTTCACTACCTTCACTTTCCCAAACCCTTCCCACTCCACCACCGCCTCACTCCTGCGTCGCCGTTCTCGACTCGCCTTCCCAACCTCCTCGCTGACCCACCCCGGAGTCGGCTGCGGTGCTCGTCCCCAAACACCGCCACTCCGTGGATATTCTCCACCCACTCCGGCCATCTCCACCTCCTCCTCGGCTCCCCCGGCATCTTCCGCACTGATCCTCGTCGGCGACGGCTCTCACGACTCGCCTACAATCTACCGCGGTCCTCTCAAGACGACGACATGTCGTGTGACGACGAACTCGGGGCGGTATTTTGGGCTGGAAGATGGGGAGCACATCAAAGTTTGTGTTGGAGATGCATTGGAGTTTTTAGATAAATTGGCTAGTGCTGCGAGGGATGTTACGGATGGTCTAATTGCTTCCCCATTGGAGTTTGTTAAGAAGCATGTCCTTTTGTCGACGAGATCAATTCTCTGTGATAATGGAATCCTAGTTATAAATGTGATTCCTCCGGATACATCATTTTTACAAGACATTGGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synth

Protein Analysis

195

Amino Acids

20.82

Weight (kDa)

6.95

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04610
fragaria_vesca	FvH4_7g06280 FvH4_7g06280 FvH4_7g06280 FvH4_7g06281
malus_domestica	MD07G1071500.v1.1
prunus_persica	Prupe.2G089200_v2.0.a1 Prupe.2G089200_v2.0.a1 Prupe.2G089200_v2.0.a1 Prupe.2G089200_v2.0.a1
pyrus_communis	pycom07g05430
rosa_chinensis	RchiOBHm_Chr1g0333841 RchiOBHm_Chr1g0333901 RchiOBHm_Chr1g0334121 RchiOBHm_Chr1g0335101 RchiOBHm_Chr1g0335121
rosa_laevigata	RLG00000029395 RLG00000029401 RLG00000029478 RLG00000029481
rosa_multiflora	Rmu_co8244035.1_g000001 Rmu_co8320637.1_g000001 Rmu_sc0000115.1_g000006 Rmu_sc0002722.1_g000007 Rmu_sc0003690.1_g000023 Rmu_sc0006326.1_g000025 Rmu_sc0006746.1_g000007
rosa_roxburghii	Rroxscaffold_1G00028300 Rroxscaffold_4G00317000 Rroxscaffold_4G00317130 Rroxscaffold_5G00352360 Rroxscaffold_7G00185410
rosa_rugosa	Rorug01G0112400 Rorug01G0112700 Rorug01G0119900 Rorug01G0129700
rosa_samantha	Rh1AG136100 Rh1AG136200 Rh1AG136800 Rh1AG141900 Rh1BG104100 Rh1BG110400 Rh1BG110500 Rh1BG110800 Rh1BG110900 Rh1CG128500 Rh1CG128700 Rh1CG129000 Rh1CG133800 Rh1DG141300 Rh1DG141600 Rh1DG141800 Rh1DG158000
rosa_wichuraiana	Rw0G013970 Rw0G021360 Rw1G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	1 cut(s)	303
AccIII	TCCGGA	1 cut(s)	553
AciI	CCGC	7 cut(s)	90, 162, 182, 252, 301, 303, 349
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	155, 191
AflIII	ACRYGT	1 cut(s)	323
AhdI	GACNNNNNGTC	1 cut(s)	324
Alw21I	GWGCWC	2 cut(s)	169, 378
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	343
Aor13HI	TCCGGA	1 cut(s)	553
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	159, 431
AspS9I	GGNCC	2 cut(s)	305, 581
AsuC2I	CCSGG	2 cut(s)	150, 242
AsuII	TTCGAA	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	2 cut(s)	305, 581
Bbv12I	GWGCWC	2 cut(s)	169, 378
BbvI	GCAGC	2 cut(s)	146, 418
BccI	CCATC	4 cut(s)	49, 224, 362, 443
BceAI	ACGGC	2 cut(s)	93, 289
BciVI	GTATCC	1 cut(s)	550
BcnI	CCSGG	2 cut(s)	150, 242
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	2 cut(s)	426, 533
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	2 cut(s)	160, 432
BlsI	GCNGC	2 cut(s)	161, 433
Bme1390I	CCNGG	2 cut(s)	150, 242
Bme18I	GGWCC	2 cut(s)	305, 581
BmeRI	GACNNNNNGTC	1 cut(s)	324
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	305, 581
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	150, 242
BmsI	GCATC	2 cut(s)	254, 388
BoxI	GACNNNNGTC	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	2 cut(s)	150, 242
Bsa29I	ATCGAT	1 cut(s)	12
BsaJI	CCNNGG	5 cut(s)	148, 190, 231, 240, 301
BsaWI	WCCGGW	1 cut(s)	553
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 191
BseAI	TCCGGA	1 cut(s)	553
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	5 cut(s)	148, 190, 231, 240, 301
BseGI	GGATG	2 cut(s)	445, 454
BseLI	CCNNNNNNNGG	2 cut(s)	155, 191
BseRI	GAGGAG	3 cut(s)	124, 217, 220
BseXI	GCAGC	2 cut(s)	146, 418
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	169, 378
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	4 cut(s)	150, 212, 242, 554
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	155, 191
BsmAI	GTCTC	1 cut(s)	11
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	343
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	169, 378
Bsp13I	TCCGGA	1 cut(s)	553
Bsp143I	GATC	2 cut(s)	258, 506
BspACI	CCGC	7 cut(s)	90, 162, 182, 252, 301, 303, 349
BspANI	GGCC	1 cut(s)	215
BspDI	ATCGAT	1 cut(s)	12
BspEI	TCCGGA	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	27
BssECI	CCNNGG	5 cut(s)	148, 190, 231, 240, 301
BssMI	GATC	2 cut(s)	258, 506
BstBI	TTCGAA	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	190, 301
BstF5I	GGATG	2 cut(s)	445, 454
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	2 cut(s)	261, 509
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	2 cut(s)	258, 506
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 251, 431
BstNSI	RCATGY	2 cut(s)	327, 491
BstPAI	GACNNNNGTC	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	148, 240
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	146, 418
Bsu15I	ATCGAT	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	215
BsuTUI	ATCGAT	1 cut(s)	12
BtgI	CCRYGG	2 cut(s)	190, 301
BtsCI	GGATG	2 cut(s)	445, 454
BtsIMutI	CAGTG	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	305, 581
Cfr42I	CCGCGG	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	12
CseI	GACGC	1 cut(s)	92
CviAII	CATG	3 cut(s)	324, 488, 585
CviJI	RGCY	6 cut(s)	159, 215, 236, 276, 361, 425
CviKI_1	RGCY	6 cut(s)	159, 215, 236, 276, 361, 425
DpnI	GATC	2 cut(s)	260, 508
DpnII	GATC	2 cut(s)	258, 506
DraIII	CACNNNGTG	1 cut(s)	191
DriI	GACNNNNNGTC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	213
Eam1105I	GACNNNNNGTC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	305, 581
Eco88I	CYCGRG	1 cut(s)	343
EcoT22I	ATGCAT	1 cut(s)	403
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	3 cut(s)	327, 491, 588
FaiI	YATR	4 cut(s)	325, 489, 539, 586
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	3 cut(s)	323, 487, 584
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	2 cut(s)	160, 432
FokI	GGATG	2 cut(s)	452, 461
Fsp4HI	GCNGC	2 cut(s)	160, 432
FspBI	CTAG	2 cut(s)	426, 533
GluI	GCNGC	2 cut(s)	160, 432
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	4 cut(s)	150, 212, 242, 554
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	327, 491, 588
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	5 cut(s)	117, 153, 284, 528, 547
HpaII	CCGG	4 cut(s)	150, 212, 242, 554
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188III	TCNNGA	4 cut(s)	114, 281, 313, 554
Hpy8I	GTNNAC	1 cut(s)	501
Hpy99I	CGWCG	6 cut(s)	108, 269, 275, 322, 340, 505
HpyAV	CCTTC	3 cut(s)	67, 84, 133
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 251, 431
Hsp92II	CATG	3 cut(s)	327, 491, 588
Kpn2I	TCCGGA	1 cut(s)	553
KspI	CCGCGG	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	258, 506
LmnI	GCTCC	2 cut(s)	241, 373
LpnPI	CCDG	6 cut(s)	113, 163, 225, 255, 347, 567
Lsp1109I	GCAGC	2 cut(s)	146, 418
LweI	GCATC	2 cut(s)	254, 388
MaeI	CTAG	2 cut(s)	426, 533
MaeIII	GTNAC	2 cut(s)	331, 442
MalI	GATC	2 cut(s)	260, 508
MboI	GATC	2 cut(s)	258, 506
MboII	GAAGA	2 cut(s)	240, 377
MhlI	GDGCHC	2 cut(s)	169, 378
MluCI	AATT	3 cut(s)	419, 456, 510
MlyI	GAGTC	3 cut(s)	111, 162, 278
MmeI	TCCRAC	1 cut(s)	373
Mph1103I	ATGCAT	1 cut(s)	403
MroI	TCCGGA	1 cut(s)	553
MseI	TTAA	2 cut(s)	35, 480
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	4 cut(s)	150, 212, 242, 554
MspR9I	CCNGG	2 cut(s)	150, 242
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	242, 251, 431
NciI	CCSGG	2 cut(s)	150, 242
NdeII	GATC	2 cut(s)	258, 506
NlaIII	CATG	3 cut(s)	327, 491, 588
NlaIV	GGNNCC	1 cut(s)	237
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	2 cut(s)	327, 491
NspV	TTCGAA	1 cut(s)	27
PciI	ACATGT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	2 cut(s)	112, 279
PfeI	GAWTC	2 cut(s)	528, 547
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	161, 433
PleI	GAGTC	3 cut(s)	111, 161, 278
PpsI	GAGTC	3 cut(s)	111, 161, 278
PscI	ACATGT	1 cut(s)	323
PshAI	GACNNNNGTC	1 cut(s)	579
PsiI	TTATAA	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	2 cut(s)	305, 581
SacII	CCGCGG	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	499
SaqAI	TTAA	2 cut(s)	35, 480
SatI	GCNGC	2 cut(s)	160, 432
Sau3AI	GATC	2 cut(s)	258, 506
Sau96I	GGNCC	2 cut(s)	305, 581
SchI	GAGTC	3 cut(s)	111, 162, 278
ScrFI	CCNGG	2 cut(s)	150, 242
SduI	GDGCHC	2 cut(s)	169, 378
SetI	ASST	3 cut(s)	59, 134, 227
SfaNI	GCATC	2 cut(s)	254, 388
Sfr303I	CCGCGG	1 cut(s)	304
SfuI	TTCGAA	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	304
SinI	GGWCC	2 cut(s)	305, 581
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	419, 456, 510
SsiI	CCGC	7 cut(s)	90, 162, 182, 252, 301, 303, 349
SspMI	CTAG	2 cut(s)	426, 533
StyD4I	CCNGG	2 cut(s)	148, 240
TaqI	TCGA	4 cut(s)	12, 27, 115, 500
TasI	AATT	3 cut(s)	419, 456, 510
TfiI	GAWTC	2 cut(s)	528, 547
Tru1I	TTAA	2 cut(s)	35, 480
Tru9I	TTAA	2 cut(s)	35, 480
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	159, 431
Tsp45I	GTSAC	1 cut(s)	331
TspGWI	ACGGA	2 cut(s)	179, 461
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	305, 581
XceI	RCATGY	2 cut(s)	327, 491
XmiI	GTMKAC	1 cut(s)	500
XspI	CTAG	2 cut(s)	426, 533
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.