Rh1BG104100

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001235
Physical Location & Seq
Reverse (-)
18153852 .. 18155486
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG104100.1

Sequence Viewer

Length: 1377 bp
ATGGCTCTCCTCGATGAGACGACTTTCGAAATGATAAACCCATCTCGTTTCACTACCTTCACTTTCCCAAACCCTTGCGACTCCACCACCACCTCACTCCTCCGCGTCGCCGTTCTCGACTCGCCTTTCCAACCCCCCGCCGACCCACCCCGAGTCGCCGCAATGCTCGTCCCCAAACACCGCCACTCCGACTGGATATTCTCCACCCACTCCGGCCATCTCCACCTCCTCCTCAGCTCCCCCGGCATCTCCCGCCTGATCCTCATCGGCGACATCTCTCACGACTCGCCCCCAATCTACCGCCGGCCGCTCAAAGACGACGACACGTCGTGTGACGACGAACTCGCGGTGAGCCTGAAACCTCTCTTCCTTGCTTTATCTCCCAAGTCCTGCTTTAAACACGGCGTTCCTGAGATACCCATTTTGAGTTACGAAGATAATTTGATTTCTAGTATGGTTTTGGAGAAGTGTGTTGGGTGTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGACTGTGGTGGTGAGGTTTCAAAGAGGGAGTTCAGGAGGCGTTTGAGATTTAGAAGAATGCCTAATTTGATTCAGACGGAGGTGCGTATTGTTCCCAAAATGGGTTTTGGTATGGATTGTGTGGGAATTGGACAAGTTGAGTTTAGGCTAGATGATAGTGTTTTAGTGCACTCTTATTTGGTTCCTATGGTGGCAAGTCTTAGCCTGGCTGCTCCTTACATTGAGGGGCAGATTCGAAGTGGGGTAAGGCCAAAAGCTTTGTGTTTAGGAGTTGGGGGTGGGGCTTTGCTTGGTTTCATGAGAACCCAATTGGGTTTTCAGGTTGTGGGTGTGGAAGCCGATGCGGAGGTGCTAAGGGTTTCTAGGCGGTATTTTGGGCTGGACGATGGAGAGCATATCAAAGTTTGTGTTGGAGATGCATTGGAATTTATAGATAAACTTGCTGGTGCCTGCGAGGTAGAGGTTGGTTGTGACGTGGGAAGTGGCAATGATGTTGGTACTAAATTTGATGTGATTATGGTTGATTTGGATTCAAGTGATGCTAGGGATGGTCTAATTGCTCCGCCATTGGAGTTTGTTAGGAAGCATGTCCTTTTGTCAGCCAGATCAATTCTCTCTGATAATGGAATCCTAGCTATAAATGTGATTCCTCCAGATACATCATTTTACAAGACATTGGTCCATGAGTTTCGAGATGTTTTTAATGACTTATACGAAATAGATGTGGGAAATGGGGAAAATTTTATTCTTATTGCTGTGGCATCGCCTCTCATGCCTTCTAGTGATTGTGAGAACTGTTTCCTCCGCAAACTAGGAAAAGTTATACCTGGGGCATACTTGTATTCCATAAAGAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

458

Amino Acids

50.3

Weight (kDa)

5.17

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 962
AccBSI CCGCTC 1 cut(s) 310
AccII CGCG 2 cut(s) 105, 347
AclWI GGATC 1 cut(s) 253
AcoI YGGCCR 2 cut(s) 214, 305
AcsI RAATTY 3 cut(s) 941, 1019, 1255
AdeI CACNNNGTG 1 cut(s) 330
AfaI GTAC 1 cut(s) 1015
AfiI CCNNNNNNNGG 1 cut(s) 617
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 537, 1050
AhdI GACNNNNNGTC 1 cut(s) 325
AjiI CACGTC 2 cut(s) 327, 991
AjnI CCWGG 2 cut(s) 720, 1342
AjuI GAANNNNNNNTTGG 2 cut(s) 816, 848
AluBI AGCT 3 cut(s) 237, 773, 1151
AluI AGCT 3 cut(s) 237, 773, 1151
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 1 cut(s) 11
Alw44I GTGCAC 1 cut(s) 683
AlwI GGATC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 3 cut(s) 214, 305, 764
ApaLI GTGCAC 1 cut(s) 683
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 3 cut(s) 941, 1019, 1255
Asp700I GAANNNNTTC 1 cut(s) 1313
AspS9I GGNCC 1 cut(s) 1195
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 3 cut(s) 361, 500, 539
AsuII TTCGAA 2 cut(s) 27, 751
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 1 cut(s) 1195
BaeGI GKGCMC 1 cut(s) 687
BanI GGYRCC 1 cut(s) 962
Bbv12I GWGCWC 1 cut(s) 687
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 712
BccI CCATC 4 cut(s) 49, 225, 896, 1058
BceAI ACGGC 2 cut(s) 95, 418
BciT130I CCWGG 2 cut(s) 722, 1344
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 7 cut(s) 450, 665, 879, 1059, 1148, 1296, 1328
BglII AGATCT 1 cut(s) 1371
BisI GCNGC 3 cut(s) 159, 308, 726
BlsI GCNGC 3 cut(s) 160, 309, 727
Bme1390I CCNGG 3 cut(s) 243, 722, 1344
Bme18I GGWCC 1 cut(s) 1195
BmeRI GACNNNNNGTC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 150
BmgBI CACGTC 2 cut(s) 327, 991
BmgT120I GGNCC 1 cut(s) 1195
BmiI GGNNCC 2 cut(s) 699, 964
BmrFI CCNGG 3 cut(s) 243, 722, 1344
BmsI GCATC 5 cut(s) 255, 847, 922, 1045, 1286
BoxI GACNNNNGTC 1 cut(s) 1193
BpmI CTGGAG 1 cut(s) 1152
Bpu10I CCTNAGC 2 cut(s) 233, 869
Bpu14I TTCGAA 2 cut(s) 27, 751
BpuMI CCSGG 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 241, 1343
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse118I RCCGGY 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 2 cut(s) 168, 1009
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 2 cut(s) 722, 1344
BseDI CCNNGG 2 cut(s) 241, 1343
BseGI GGATG 2 cut(s) 511, 1069
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMI GCAATG 2 cut(s) 168, 1009
BseMII CTCAG 2 cut(s) 247, 402
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 3 cut(s) 89, 218, 221
BseSI GKGCMC 1 cut(s) 687
BseX3I CGGCCG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 712
Bsh1236I CGCG 2 cut(s) 105, 347
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 3 cut(s) 216, 307, 766
BshNI GGYRCC 1 cut(s) 962
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 687
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 3 cut(s) 213, 243, 304
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 617
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 3 cut(s) 216, 307, 766
BsoBI CYCGRG 1 cut(s) 150
Bsp119I TTCGAA 2 cut(s) 27, 751
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 3 cut(s) 258, 1121, 1371
BspANI GGCC 3 cut(s) 216, 307, 766
BspCNI CTCAG 2 cut(s) 246, 403
BspFNI CGCG 2 cut(s) 105, 347
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 2 cut(s) 699, 964
BspPI GGATC 1 cut(s) 253
BspT104I TTCGAA 2 cut(s) 27, 751
BspT107I GGYRCC 1 cut(s) 962
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 2 cut(s) 168, 1009
BsrFI RCCGGY 1 cut(s) 303
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 303
BssECI CCNNGG 2 cut(s) 241, 1343
BssMI GATC 3 cut(s) 258, 1121, 1371
Bst2UI CCWGG 2 cut(s) 722, 1344
Bst4CI ACNGT 2 cut(s) 521, 1313
Bst6I CTCTTC 1 cut(s) 371
BstBI TTCGAA 2 cut(s) 27, 751
BstC8I GCNNGC 2 cut(s) 305, 967
BstDEI CTNAG 4 cut(s) 233, 411, 716, 869
BstF5I GGATG 2 cut(s) 511, 1069
BstFNI CGCG 2 cut(s) 105, 347
BstKTI GATC 3 cut(s) 261, 1124, 1374
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 258, 1121, 1371
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 3 cut(s) 243, 252, 1288
BstNI CCWGG 2 cut(s) 722, 1344
BstNSI RCATGY 1 cut(s) 1106
BstPAI GACNNNNGTC 1 cut(s) 1193
BstSCI CCNGG 3 cut(s) 241, 720, 1342
BstSLI GKGCMC 1 cut(s) 687
BstUI CGCG 2 cut(s) 105, 347
BstV1I GCAGC 1 cut(s) 712
BstX2I RGATCY 1 cut(s) 1371
BstYI RGATCY 1 cut(s) 1371
BstZI CGGCCG 1 cut(s) 305
BsuRI GGCC 3 cut(s) 216, 307, 766
BtgZI GCGATG 1 cut(s) 1263
BtrI CACGTC 2 cut(s) 327, 991
BtsCI GGATG 2 cut(s) 511, 1069
Cac8I GCNNGC 2 cut(s) 305, 967
CciI TCATGA 1 cut(s) 813
Cfr10I RCCGGY 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 1195
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 1014
CviAII CATG 4 cut(s) 814, 1103, 1199, 1288
CviQI GTAC 1 cut(s) 1014
DdeI CTNAG 4 cut(s) 233, 411, 716, 869
DpnI GATC 3 cut(s) 260, 1123, 1373
DpnII GATC 3 cut(s) 258, 1121, 1371
DraI TTTAAA 1 cut(s) 397
DraIII CACNNNGTG 1 cut(s) 330
DriI GACNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 2 cut(s) 214, 305
EagI CGGCCG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 371
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 371
EciI GGCGGA 1 cut(s) 1068
EclXI CGGCCG 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 1195
Eco52I CGGCCG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 150
EcoRII CCWGG 2 cut(s) 720, 1342
EcoT22I ATGCAT 1 cut(s) 937
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 4 cut(s) 817, 1106, 1202, 1291
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 155
FatI CATG 4 cut(s) 813, 1102, 1198, 1287
FauI CCCGC 2 cut(s) 145, 260
Fnu4HI GCNGC 3 cut(s) 159, 308, 726
FokI GGATG 2 cut(s) 518, 1076
Fsp4HI GCNGC 3 cut(s) 159, 308, 726
FspBI CTAG 7 cut(s) 450, 665, 879, 1059, 1148, 1296, 1328
GluI GCNGC 3 cut(s) 159, 308, 726
GsuI CTGGAG 1 cut(s) 1152
HaeIII GGCC 3 cut(s) 216, 307, 766
HapII CCGG 3 cut(s) 213, 243, 304
HgaI GACGC 1 cut(s) 94
Hin1II CATG 4 cut(s) 817, 1106, 1202, 1291
HindIII AAGCTT 1 cut(s) 771
HinfI GANTC 9 cut(s) 80, 119, 153, 284, 586, 748, 1046, 1143, 1162
HpaII CCGG 3 cut(s) 213, 243, 304
HphI GGTGA 3 cut(s) 361, 500, 539
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 3 cut(s) 190, 591, 1135
Hpy188III TCNNGA 7 cut(s) 116, 281, 410, 550, 814, 1169, 1208
Hpy8I GTNNAC 1 cut(s) 685
Hpy99I CGWCG 4 cut(s) 110, 323, 331, 341
HpyAV CCTTC 2 cut(s) 67, 1302
HpyCH4III ACNGT 2 cut(s) 521, 1313
HpyCH4IV ACGT 2 cut(s) 326, 990
HpyCH4V TGCA 2 cut(s) 685, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 252, 1288
HpyF3I CTNAG 4 cut(s) 233, 411, 716, 869
HpySE526I ACGT 2 cut(s) 326, 990
Hsp92II CATG 4 cut(s) 817, 1106, 1202, 1291
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
Kzo9I GATC 3 cut(s) 258, 1121, 1371
LmnI GCTCC 3 cut(s) 242, 733, 1081
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 5 cut(s) 255, 847, 922, 1045, 1286
MaeI CTAG 7 cut(s) 450, 665, 879, 1059, 1148, 1296, 1328
MaeII ACGT 2 cut(s) 326, 990
MaeIII GTNAC 3 cut(s) 332, 428, 986
MalI GATC 3 cut(s) 260, 1123, 1373
MbiI CCGCTC 1 cut(s) 310
MboI GATC 3 cut(s) 258, 1121, 1371
MboII GAAGA 3 cut(s) 358, 446, 582
MfeI CAATTG 1 cut(s) 824
MflI RGATCY 1 cut(s) 1371
MhlI GDGCHC 1 cut(s) 687
MluCI AATT 9 cut(s) 439, 580, 642, 824, 941, 1019, 1071, 1125, 1255
MlyI GAGTC 4 cut(s) 74, 113, 162, 278
MmeI TCCRAC 3 cut(s) 154, 213, 907
Mph1103I ATGCAT 1 cut(s) 937
MroNI GCCGGC 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 1313
MseI TTAA 2 cut(s) 396, 1218
MspI CCGG 3 cut(s) 213, 243, 304
MspR9I CCNGG 3 cut(s) 243, 722, 1344
MunI CAATTG 1 cut(s) 824
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 2 cut(s) 722, 1344
MvnI CGCG 2 cut(s) 105, 347
MwoI GCNNNNNNNGC 3 cut(s) 243, 252, 1288
NaeI GCCGGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 243
NdeII GATC 3 cut(s) 258, 1121, 1371
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 4 cut(s) 817, 1106, 1202, 1291
NlaIV GGNNCC 2 cut(s) 699, 964
NmuCI GTSAC 2 cut(s) 332, 986
NsiI ATGCAT 1 cut(s) 937
NspI RCATGY 1 cut(s) 1106
NspV TTCGAA 2 cut(s) 27, 751
PagI TCATGA 1 cut(s) 813
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 579
PdiI GCCGGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 1313
PfeI GAWTC 5 cut(s) 586, 748, 1046, 1143, 1162
PkrI GCNGC 3 cut(s) 160, 309, 727
PleI GAGTC 4 cut(s) 74, 113, 161, 278
PpsI GAGTC 4 cut(s) 74, 113, 161, 278
PshAI GACNNNNGTC 1 cut(s) 1193
Psp6I CCWGG 2 cut(s) 720, 1342
PspGI CCWGG 2 cut(s) 720, 1342
PspN4I GGNNCC 2 cut(s) 699, 964
PspPI GGNCC 1 cut(s) 1195
PsuI RGATCY 1 cut(s) 1371
RsaI GTAC 1 cut(s) 1015
RsaNI GTAC 1 cut(s) 1014
SaqAI TTAA 2 cut(s) 396, 1218
SatI GCNGC 3 cut(s) 159, 308, 726
Sau3AI GATC 3 cut(s) 258, 1121, 1371
Sau96I GGNCC 1 cut(s) 1195
SchI GAGTC 4 cut(s) 74, 113, 162, 278
ScrFI CCNGG 3 cut(s) 243, 722, 1344
SduI GDGCHC 1 cut(s) 687
SfaNI GCATC 5 cut(s) 255, 847, 922, 1045, 1286
SfuI TTCGAA 2 cut(s) 27, 751
SinI GGWCC 1 cut(s) 1195
Sse9I AATT 9 cut(s) 439, 580, 642, 824, 941, 1019, 1071, 1125, 1255
SspMI CTAG 7 cut(s) 450, 665, 879, 1059, 1148, 1296, 1328
StyD4I CCNGG 3 cut(s) 241, 720, 1342
TaaI ACNGT 2 cut(s) 521, 1313
TaiI ACGT 2 cut(s) 329, 993
TaqI TCGA 5 cut(s) 12, 27, 117, 751, 1207
TasI AATT 9 cut(s) 439, 580, 642, 824, 941, 1019, 1071, 1125, 1255
TauI GCSGC 2 cut(s) 161, 310
TfiI GAWTC 5 cut(s) 586, 748, 1046, 1143, 1162
Tru1I TTAA 2 cut(s) 396, 1218
Tru9I TTAA 2 cut(s) 396, 1218
TseFI GTSAC 2 cut(s) 332, 986
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 2 cut(s) 332, 986
TspDTI ATGAA 1 cut(s) 802
TspGWI ACGGA 1 cut(s) 608
VneI GTGCAC 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 1195
XapI RAATTY 3 cut(s) 941, 1019, 1255
XceI RCATGY 1 cut(s) 1106
XmnI GAANNNNTTC 1 cut(s) 1313
XspI CTAG 7 cut(s) 450, 665, 879, 1059, 1148, 1296, 1328
Zsp2I ATGCAT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.