Rh1AG136100

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001235
Physical Location & Seq
Reverse (-)
25833357 .. 25837620
4264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG136100.1

Sequence Viewer

Length: 885 bp
ATGCATCATTCGTTTTTGGCTTATGTCTTTTGCATGGACGTTCATCTCACTGACTCTGGATTGGATAAGATTTTTGATATAATTGGCATGGTCTACCAATACATAAAGTTATTGCGTCATGTGTACCCACAACAATGGATATTTAAGGAACTGCAGGATACTAGGAACATGGATTTTAGATTTGCAGAGGAGCAGCCTCAAGATGATTATGCCTCAAAATTTGCAGGAAATTTACTAATATATGCAGCAGAACTTGTTATTTATGGACCAGAAAACATGAGGATTGATGTTGTATCAAAGCCCTCATTTAAGTCAGAAGATACAGCTTCTCCGAGATGTATACTAGATGAGCCGTTGGTGAAATTCTGGTACAAACTTGATGTATCCCTCCTCAAAGATGAGCTGAATGAGATTGTCTATCAGGCTAGTGTTGCCAATCTGGAAACTTTGGTATCTGTATTGACTGACAAGCTGGAGCTAAAGGTCTACGGTTTCAATGACAAGCTTCTAGCTCTGTTGTCAAAGATTCTGAAAACAACCAAATGTTTCATGCCAATTTCTGATTGTTTTATGGTTATTAAAGAAGATATGGAGCGAAAGTTAAAGAACACCAATGTGAAGCCTCTGAGTCACTCTACATACTTGAGAGTGCAAGTTTTGTTCCAGATATTCTATGATGATGAGAAGTTGCATATTTTAAGTGGACTTTCTATTTCTGATGTGAAGTCATTTATTCCTCAGCTTTGGTCCAAGGAAGCAGAACAACTCAGAAGCATTCAGAAGGACGATGTCATGAACTGGTACAAAAACAAATTTGCAACAGTCATCTCCCAAGTGTCGGAGACTGACTTGCAATCCATGTTTGGGGATGCGAAACAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

294

Amino Acids

34.24

Weight (kDa)

5.46

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 128 - 229 2.2e-21 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 93, 340, 486
AcsI RAATTY 4 cut(s) 218, 229, 362, 812
AfaI GTAC 3 cut(s) 125, 371, 803
AfiI CCNNNNNNNGG 2 cut(s) 838, 864
AgsI TTSAA 1 cut(s) 496
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 7 cut(s) 326, 403, 472, 478, 505, 512, 742
AluI AGCT 7 cut(s) 326, 403, 472, 478, 505, 512, 742
Alw26I GTCTC 1 cut(s) 836
ApeKI GCWGC 2 cut(s) 193, 245
ApoI RAATTY 4 cut(s) 218, 229, 362, 812
AspS9I GGNCC 2 cut(s) 266, 747
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 2 cut(s) 266, 747
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BbvCI CCTCAGC 1 cut(s) 738
BbvI GCAGC 2 cut(s) 205, 257
BceAI ACGGC 1 cut(s) 337
BciVI GTATCC 2 cut(s) 151, 394
BcoDI GTCTC 1 cut(s) 836
BfaI CTAG 4 cut(s) 162, 344, 426, 509
BfmI CTRYAG 1 cut(s) 152
BfuI GTATCC 2 cut(s) 151, 394
BisI GCNGC 2 cut(s) 194, 246
BlsI GCNGC 2 cut(s) 195, 247
Bme18I GGWCC 2 cut(s) 266, 747
BmgT120I GGNCC 2 cut(s) 266, 747
BmsI GCATC 2 cut(s) 13, 859
BpmI CTGGAG 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 183, 664
BsaJI CCNNGG 1 cut(s) 750
BsaXI ACNNNNNCTCC 4 cut(s) 313, 343, 584, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 838, 864
Bse1I ACTGG 1 cut(s) 803
BseDI CCNNGG 1 cut(s) 750
BseGI GGATG 1 cut(s) 874
BseLI CCNNNNNNNGG 2 cut(s) 838, 864
BseMII CTCAG 3 cut(s) 617, 752, 781
BseNI ACTGG 1 cut(s) 803
BseRI GAGGAG 2 cut(s) 203, 380
BseXI GCAGC 2 cut(s) 205, 257
BslI CCNNNNNNNGG 2 cut(s) 838, 864
BsmAI GTCTC 1 cut(s) 836
BsmI GAATGC 1 cut(s) 774
BspCNI CTCAG 3 cut(s) 618, 751, 780
BspHI TCATGA 1 cut(s) 792
BspMAI CTGCAG 1 cut(s) 156
BsrI ACTGG 1 cut(s) 803
BssECI CCNNGG 1 cut(s) 750
BssNAI GTATAC 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 750
Bst1107I GTATAC 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 491, 823
BstDEI CTNAG 3 cut(s) 626, 738, 767
BstF5I GGATG 1 cut(s) 874
BstMAI GTCTC 1 cut(s) 836
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstSFI CTRYAG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 205, 257
BstXI CCANNNNNNTGG 1 cut(s) 135
BstZ17I GTATAC 1 cut(s) 341
BsuI GTATCC 2 cut(s) 151, 394
BtsCI GGATG 1 cut(s) 874
BtsIMutI CAGTG 1 cut(s) 48
CciI TCATGA 1 cut(s) 792
Cfr13I GGNCC 2 cut(s) 266, 747
CseI GACGC 1 cut(s) 104
Csp6I GTAC 3 cut(s) 124, 370, 802
CviAII CATG 8 cut(s) 34, 88, 119, 169, 277, 550, 793, 859
CviQI GTAC 3 cut(s) 124, 370, 802
DdeI CTNAG 3 cut(s) 626, 738, 767
Eco130I CCWWGG 1 cut(s) 750
Eco47I GGWCC 2 cut(s) 266, 747
EcoT14I CCWWGG 1 cut(s) 750
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 750
FaeI CATG 8 cut(s) 37, 91, 122, 172, 280, 553, 796, 862
FatI CATG 8 cut(s) 33, 87, 118, 168, 276, 549, 792, 858
FblI GTMKAC 3 cut(s) 93, 340, 486
Fnu4HI GCNGC 2 cut(s) 194, 246
FokI GGATG 1 cut(s) 881
Fsp4HI GCNGC 2 cut(s) 194, 246
FspBI CTAG 4 cut(s) 162, 344, 426, 509
GluI GCNGC 2 cut(s) 194, 246
GsuI CTGGAG 1 cut(s) 494
HgaI GACGC 1 cut(s) 104
Hin1II CATG 8 cut(s) 37, 91, 122, 172, 280, 553, 796, 862
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 3 cut(s) 53, 526, 628
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 5 cut(s) 94, 124, 341, 487, 704
Hpy188I TCNGA 9 cut(s) 316, 333, 531, 562, 627, 718, 770, 780, 841
Hpy188III TCNNGA 5 cut(s) 57, 200, 440, 664, 793
Hpy8I GTNNAC 5 cut(s) 94, 124, 341, 487, 704
HpyAV CCTTC 1 cut(s) 775
HpyCH4III ACNGT 2 cut(s) 491, 823
HpyCH4IV ACGT 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 3 cut(s) 626, 738, 767
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 8 cut(s) 37, 91, 122, 172, 280, 553, 796, 862
LmnI GCTCC 3 cut(s) 190, 475, 592
Lsp1109I GCAGC 2 cut(s) 205, 257
LweI GCATC 2 cut(s) 13, 859
MaeI CTAG 4 cut(s) 162, 344, 426, 509
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 629
MboII GAAGA 2 cut(s) 329, 596
MluCI AATT 6 cut(s) 81, 218, 229, 362, 555, 812
MlyI GAGTC 2 cut(s) 47, 637
MmeI TCCRAC 1 cut(s) 819
MnlI CCTC 9 cut(s) 181, 207, 223, 273, 313, 398, 401, 633, 747
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 144, 309, 579, 602, 698
MslI CAYNNNNRTG 2 cut(s) 133, 614
Mva1269I GAATGC 1 cut(s) 774
MwoI GCNNNNNNNGC 1 cut(s) 431
NlaIII CATG 8 cut(s) 37, 91, 122, 172, 280, 553, 796, 862
NmuCI GTSAC 1 cut(s) 629
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 614
PagI TCATGA 1 cut(s) 792
PctI GAATGC 1 cut(s) 774
PfeI GAWTC 1 cut(s) 526
PflFI GACNNNGTC 1 cut(s) 788
PkrI GCNGC 2 cut(s) 195, 247
PleI GAGTC 2 cut(s) 47, 636
PpsI GAGTC 2 cut(s) 47, 636
PspPI GGNCC 2 cut(s) 266, 747
PstI CTGCAG 1 cut(s) 156
PsyI GACNNNGTC 1 cut(s) 788
RsaI GTAC 3 cut(s) 125, 371, 803
RsaNI GTAC 3 cut(s) 124, 370, 802
RseI CAYNNNNRTG 2 cut(s) 133, 614
SaqAI TTAA 5 cut(s) 144, 309, 579, 602, 698
SatI GCNGC 2 cut(s) 194, 246
Sau96I GGNCC 2 cut(s) 266, 747
SchI GAGTC 2 cut(s) 47, 637
SetI ASST 9 cut(s) 42, 328, 405, 474, 480, 486, 507, 514, 744
SfaNI GCATC 2 cut(s) 13, 859
SfcI CTRYAG 1 cut(s) 152
SinI GGWCC 2 cut(s) 266, 747
SmiMI CAYNNNNRTG 2 cut(s) 133, 614
SmlI CTYRAG 2 cut(s) 198, 643
SmoI CTYRAG 2 cut(s) 198, 643
Sse9I AATT 6 cut(s) 81, 218, 229, 362, 555, 812
SspMI CTAG 4 cut(s) 162, 344, 426, 509
StyI CCWWGG 1 cut(s) 750
TaaI ACNGT 2 cut(s) 491, 823
TaiI ACGT 1 cut(s) 42
TasI AATT 6 cut(s) 81, 218, 229, 362, 555, 812
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 5 cut(s) 144, 309, 579, 602, 698
Tru9I TTAA 5 cut(s) 144, 309, 579, 602, 698
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 2 cut(s) 193, 245
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 3 cut(s) 32, 538, 809
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 788
VpaK11BI GGWCC 2 cut(s) 266, 747
XapI RAATTY 4 cut(s) 218, 229, 362, 812
XmiI GTMKAC 3 cut(s) 93, 340, 486
XspI CTAG 4 cut(s) 162, 344, 426, 509
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.