Rh1AG136800

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001235
Physical Location & Seq
Reverse (-)
25878540 .. 25879919
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG136800.1

Sequence Viewer

Length: 1380 bp
ATGGCTATCCTCGATGAGACGACTTTCGAAATGATAAACCCATCTCGTTTCACTACCTTCACTTTCCCAAACCCTTGCGACTCCACCACCACCTCACTCCTCCGCGTCGCCGTTCTCGACTCGCCTTTCCAACCCCCCGCCGACCCACCCCGAGTCGCCGCAATGCTCGTCCCCAAACACCGCCACTCCGACTGGATATTCTCCACCCACTCCGGCCATCTCCAGCTCCTCCTCAGCTCCCCCGGCATCTCCCGCCTGATCCTCATCGGCGACAGCTCTCACCACTCGCCTCCAATCTACCGCCGTCCTCTCAAAGACGACGACACGTCGTGTGACGACGAAGTCCTCGGGGTGAGCTTGAAACCTCTCTTCCTTGCTTTATCTCCCAAGTCCTGCTTTCAACACGGCATTCCTGAGATACCCATTTTGAGTTACCAAGATAATTTGATTTCTAGTTTGGTTTTGGAGAAATGTGTTGGATCTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGACATTGGCGGTGAGGTTTCAACGAGGGAGTTCAGGAGGCGTTTGAGGTTTAAAAGAATGCCCAATTTGATTCAGACGGAGGTGCGTATTGTTCCCAAAATGGGTTTTGGTTTGGATTGTGTAGGAATTGGACAAGTTGAGTTTAGGCTAGATGATAGTGTTTTAGTGCACTCTTATTTGGTTCCTATGGTCGCAAGTCTTAGCCTGGCTGCTTCTTACATTGACGGACAGATTCGAAGTGGGGTAAGGCCAAAAGCTTTGTGTCTAGGAGTTGGGGGTGGGGCTTTGCTTGGTTTCTTGAGAACCCTATTGGGTTTTCAGGTTGTGGGTGTGGAAGCCGATGAGGAGGTGTTAAGGCTTTCTAGGCGGTATTTTGGGCTGGACAATGGAGAGCATATCAAAGTTTGTGTTGGAGATGCATTACAAGTTATTGATAAACTTGCTGGTGCCTGCGAGGTAGAGGTTGGTTGTGACGTGGGCAGTGATAATGATGTTGATACTAAGTTTGATGTGATTATGGTTGATTTGGATTCAAGTGATGCTTGGGATGGTCTAATTGCTCCGCCATTGGAGTTTGTTCAGAAGCATGTCCTTTTGTCAGCCAGATCAATTCTCTCTGAAAATGGAATCCTAGCTATAAATGTGATTCCTCCAAATACATCATTTTACAAGACATTGATCCATGGGTTTCGAGATGTTTTCAATGAGTTGTACGAAATAGATGTGGGAAATGGAGAAAATTTTATTCTTATTGCTGTGTCATCTCCTCTCATGCCTTCTAGTGATTGTGAGAACTGTTTCCTCAACAAACTAGGAAAAGCTATATCTGGGGCATACTTGAATTCCATAAAGAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spermine_synth

Protein Analysis

459

Amino Acids

50.23

Weight (kDa)

5.04

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 965
AccII CGCG 1 cut(s) 105
AciI CCGC 9 cut(s) 103, 138, 159, 181, 253, 301, 528, 886, 1082
AclWI GGATC 3 cut(s) 253, 487, 1192
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 2 cut(s) 1258, 1360
AdeI CACNNNGTG 1 cut(s) 330
AfaI GTAC 1 cut(s) 1232
AfiI CCNNNNNNNGG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 6 cut(s) 361, 401, 540, 1053, 1222, 1360
AhdI GACNNNNNGTC 1 cut(s) 325
AjiI CACGTC 2 cut(s) 327, 994
AjnI CCWGG 1 cut(s) 723
AluBI AGCT 7 cut(s) 226, 237, 276, 357, 776, 1154, 1340
AluI AGCT 7 cut(s) 226, 237, 276, 357, 776, 1154, 1340
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 1 cut(s) 11
Alw44I GTGCAC 1 cut(s) 686
AlwI GGATC 3 cut(s) 253, 487, 1192
Ama87I CYCGRG 2 cut(s) 150, 347
AoxI GGCC 2 cut(s) 214, 767
ApaLI GTGCAC 1 cut(s) 686
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 2 cut(s) 1258, 1360
Asp700I GAANNNNTTC 1 cut(s) 1316
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 4 cut(s) 272, 364, 503, 542
AsuII TTCGAA 2 cut(s) 27, 754
AvaI CYCGRG 2 cut(s) 150, 347
BaeGI GKGCMC 1 cut(s) 690
BanI GGYRCC 1 cut(s) 965
Bbv12I GWGCWC 1 cut(s) 690
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 715
BccI CCATC 3 cut(s) 49, 225, 1061
BceAI ACGGC 3 cut(s) 95, 288, 421
BciT130I CCWGG 1 cut(s) 725
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 7 cut(s) 453, 668, 785, 882, 1151, 1299, 1331
BglII AGATCT 1 cut(s) 1374
BisI GCNGC 2 cut(s) 159, 729
BlsI GCNGC 2 cut(s) 160, 730
Bme1390I CCNGG 2 cut(s) 243, 725
BmeRI GACNNNNNGTC 1 cut(s) 325
BmeT110I CYCGRG 2 cut(s) 150, 347
BmgBI CACGTC 2 cut(s) 327, 994
BmiI GGNNCC 2 cut(s) 702, 967
BmrFI CCNGG 2 cut(s) 243, 725
BmsI GCATC 3 cut(s) 255, 925, 1048
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 233
Bpu14I TTCGAA 2 cut(s) 27, 754
BpuEI CTTGAG 1 cut(s) 838
BpuMI CCSGG 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 241, 346, 1201
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 263
BseBI CCWGG 1 cut(s) 725
BseDI CCNNGG 3 cut(s) 241, 346, 1201
BseGI GGATG 2 cut(s) 514, 1072
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 247, 405
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 5 cut(s) 89, 218, 221, 878, 1275
BseSI GKGCMC 1 cut(s) 690
BseXI GCAGC 1 cut(s) 715
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 216, 769
BshNI GGYRCC 1 cut(s) 965
BsiHKAI GWGCWC 1 cut(s) 690
BsiHKCI CYCGRG 2 cut(s) 150, 347
BsiSI CCGG 2 cut(s) 213, 243
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 2 cut(s) 408, 582
BsnI GGCC 2 cut(s) 216, 769
BsoBI CYCGRG 2 cut(s) 150, 347
Bsp119I TTCGAA 2 cut(s) 27, 754
Bsp1286I GDGCHC 1 cut(s) 690
Bsp143I GATC 5 cut(s) 258, 479, 1124, 1197, 1374
Bsp19I CCATGG 1 cut(s) 1201
BspACI CCGC 9 cut(s) 103, 138, 159, 181, 253, 301, 528, 886, 1082
BspANI GGCC 2 cut(s) 216, 769
BspCNI CTCAG 2 cut(s) 246, 406
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 702, 967
BspPI GGATC 3 cut(s) 253, 487, 1192
BspT104I TTCGAA 2 cut(s) 27, 754
BspT107I GGYRCC 1 cut(s) 965
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 241, 346, 1201
BssMI GATC 5 cut(s) 258, 479, 1124, 1197, 1374
BssT1I CCWWGG 1 cut(s) 1201
Bst2UI CCWGG 1 cut(s) 725
Bst4CI ACNGT 1 cut(s) 1316
Bst6I CTCTTC 1 cut(s) 374
BstBI TTCGAA 2 cut(s) 27, 754
BstC8I GCNNGC 1 cut(s) 970
BstDEI CTNAG 4 cut(s) 233, 414, 719, 1020
BstDSI CCRYGG 1 cut(s) 1201
BstF5I GGATG 2 cut(s) 514, 1072
BstFNI CGCG 1 cut(s) 105
BstKTI GATC 5 cut(s) 261, 482, 1127, 1200, 1377
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 5 cut(s) 258, 479, 1124, 1197, 1374
BstMWI GCNNNNNNNGC 3 cut(s) 243, 252, 883
BstNI CCWGG 1 cut(s) 725
BstNSI RCATGY 1 cut(s) 1109
BstSCI CCNGG 2 cut(s) 241, 723
BstSLI GKGCMC 1 cut(s) 690
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 715
BstX2I RGATCY 2 cut(s) 479, 1374
BstYI RGATCY 2 cut(s) 479, 1374
BsuRI GGCC 2 cut(s) 216, 769
BtgI CCRYGG 1 cut(s) 1201
BtrI CACGTC 2 cut(s) 327, 994
BtsCI GGATG 2 cut(s) 514, 1072
BtsI GCAGTG 1 cut(s) 1006
BtsIMutI CAGTG 1 cut(s) 1006
Cac8I GCNNGC 1 cut(s) 970
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 1231
CviAII CATG 3 cut(s) 1106, 1202, 1291
CviQI GTAC 1 cut(s) 1231
DdeI CTNAG 4 cut(s) 233, 414, 719, 1020
DpnI GATC 5 cut(s) 260, 481, 1126, 1199, 1376
DpnII GATC 5 cut(s) 258, 479, 1124, 1197, 1374
DraI TTTAAA 1 cut(s) 571
DraIII CACNNNGTG 1 cut(s) 330
DrdI GACNNNNNNGTC 1 cut(s) 341
DriI GACNNNNNGTC 1 cut(s) 325
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 374
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 374
EciI GGCGGA 1 cut(s) 1071
Eco130I CCWWGG 1 cut(s) 1201
Eco88I CYCGRG 2 cut(s) 150, 347
EcoRI GAATTC 1 cut(s) 1360
EcoRII CCWGG 1 cut(s) 723
EcoT14I CCWWGG 1 cut(s) 1201
EcoT22I ATGCAT 1 cut(s) 940
ErhI CCWWGG 1 cut(s) 1201
Esp3I CGTCTC 1 cut(s) 11
FaeI CATG 3 cut(s) 1109, 1205, 1294
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 1045, 1077
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 1105, 1201, 1290
FauI CCCGC 2 cut(s) 145, 260
Fnu4HI GCNGC 2 cut(s) 159, 729
FokI GGATG 2 cut(s) 521, 1079
Fsp4HI GCNGC 2 cut(s) 159, 729
FspBI CTAG 7 cut(s) 453, 668, 785, 882, 1151, 1299, 1331
GluI GCNGC 2 cut(s) 159, 729
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 216, 769
HapII CCGG 2 cut(s) 213, 243
HgaI GACGC 1 cut(s) 94
Hin1II CATG 3 cut(s) 1109, 1205, 1294
HindIII AAGCTT 1 cut(s) 774
HinfI GANTC 8 cut(s) 80, 119, 153, 589, 751, 1049, 1146, 1165
HpaII CCGG 2 cut(s) 213, 243
HphI GGTGA 4 cut(s) 272, 364, 503, 542
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 4 cut(s) 190, 594, 1101, 1138
Hpy188III TCNNGA 5 cut(s) 116, 413, 553, 817, 1211
Hpy8I GTNNAC 1 cut(s) 688
Hpy99I CGWCG 4 cut(s) 110, 323, 331, 341
HpyAV CCTTC 2 cut(s) 67, 1305
HpyCH4III ACNGT 1 cut(s) 1316
HpyCH4IV ACGT 2 cut(s) 326, 993
HpyCH4V TGCA 2 cut(s) 688, 938
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 252, 883
HpyF3I CTNAG 4 cut(s) 233, 414, 719, 1020
HpySE526I ACGT 2 cut(s) 326, 993
Hsp92II CATG 3 cut(s) 1109, 1205, 1294
Kzo9I GATC 5 cut(s) 258, 479, 1124, 1197, 1374
LmnI GCTCC 3 cut(s) 231, 242, 1084
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 3 cut(s) 255, 925, 1048
MaeI CTAG 7 cut(s) 453, 668, 785, 882, 1151, 1299, 1331
MaeII ACGT 2 cut(s) 326, 993
MaeIII GTNAC 3 cut(s) 332, 431, 989
MalI GATC 5 cut(s) 260, 481, 1126, 1199, 1376
MboI GATC 5 cut(s) 258, 479, 1124, 1197, 1374
MboII GAAGA 1 cut(s) 361
MflI RGATCY 2 cut(s) 479, 1374
MhlI GDGCHC 1 cut(s) 690
MluCI AATT 7 cut(s) 442, 583, 645, 1074, 1128, 1258, 1360
MlyI GAGTC 3 cut(s) 74, 113, 162
MmeI TCCRAC 4 cut(s) 154, 213, 457, 910
Mph1103I ATGCAT 1 cut(s) 940
MroXI GAANNNNTTC 1 cut(s) 1316
MseI TTAA 2 cut(s) 570, 872
MspI CCGG 2 cut(s) 213, 243
MspR9I CCNGG 2 cut(s) 243, 725
Mva1269I GAATGC 2 cut(s) 408, 582
MvaI CCWGG 1 cut(s) 725
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 243, 252, 883
NciI CCSGG 1 cut(s) 243
NcoI CCATGG 1 cut(s) 1201
NdeII GATC 5 cut(s) 258, 479, 1124, 1197, 1374
NlaIII CATG 3 cut(s) 1109, 1205, 1294
NlaIV GGNNCC 2 cut(s) 702, 967
NmuCI GTSAC 2 cut(s) 332, 989
NsiI ATGCAT 1 cut(s) 940
NspI RCATGY 1 cut(s) 1109
NspV TTCGAA 2 cut(s) 27, 754
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 2 cut(s) 408, 582
PdmI GAANNNNTTC 1 cut(s) 1316
PfeI GAWTC 5 cut(s) 589, 751, 1049, 1146, 1165
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 160, 730
PleI GAGTC 3 cut(s) 74, 113, 161
PpsI GAGTC 3 cut(s) 74, 113, 161
Psp6I CCWGG 1 cut(s) 723
PspGI CCWGG 1 cut(s) 723
PspN4I GGNNCC 2 cut(s) 702, 967
PsuI RGATCY 2 cut(s) 479, 1374
PsyI GACNNNGTC 1 cut(s) 341
RsaI GTAC 1 cut(s) 1232
RsaNI GTAC 1 cut(s) 1231
SaqAI TTAA 2 cut(s) 570, 872
SatI GCNGC 2 cut(s) 159, 729
Sau3AI GATC 5 cut(s) 258, 479, 1124, 1197, 1374
SchI GAGTC 3 cut(s) 74, 113, 162
ScrFI CCNGG 2 cut(s) 243, 725
SduI GDGCHC 1 cut(s) 690
SfaNI GCATC 3 cut(s) 255, 925, 1048
SfuI TTCGAA 2 cut(s) 27, 754
SmlI CTYRAG 1 cut(s) 817
SmoI CTYRAG 1 cut(s) 817
Sse9I AATT 7 cut(s) 442, 583, 645, 1074, 1128, 1258, 1360
SsiI CCGC 9 cut(s) 103, 138, 159, 181, 253, 301, 528, 886, 1082
SspMI CTAG 7 cut(s) 453, 668, 785, 882, 1151, 1299, 1331
StyD4I CCNGG 2 cut(s) 241, 723
StyI CCWWGG 1 cut(s) 1201
TaaI ACNGT 1 cut(s) 1316
TaiI ACGT 2 cut(s) 329, 996
TaqI TCGA 5 cut(s) 12, 27, 117, 754, 1210
TasI AATT 7 cut(s) 442, 583, 645, 1074, 1128, 1258, 1360
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 5 cut(s) 589, 751, 1049, 1146, 1165
Tru1I TTAA 2 cut(s) 570, 872
Tru9I TTAA 2 cut(s) 570, 872
TscAI CASTG 1 cut(s) 1006
TseFI GTSAC 2 cut(s) 332, 989
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 2 cut(s) 332, 989
TspGWI ACGGA 2 cut(s) 611, 759
TspRI CASTG 1 cut(s) 1006
Tth111I GACNNNGTC 1 cut(s) 341
VneI GTGCAC 1 cut(s) 686
XapI RAATTY 2 cut(s) 1258, 1360
XceI RCATGY 1 cut(s) 1109
XmnI GAANNNNTTC 1 cut(s) 1316
XspI CTAG 7 cut(s) 453, 668, 785, 882, 1151, 1299, 1331
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.