RchiOBHm_Chr1g0333901

Methyltransferase-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
26022956 .. 26027523
4568 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56267

Sequence Viewer

Length: 579 bp
ATGCGAATTCTTGCGAGGTTTTGGAGAAATGTGTTGGCTCTTTGGTTGGTGGTCAGGTTTCAAAGAGGGGGTTCAGAAGGCGTTTCAGATTTAAAAGCTAGAATGCCCAATTTAGTTGAGGACAGAGGTGCGTATGTTCCCAAAACGGGTTTTGGTTTGGATTGTGTGGGAATTGGACTAGTTGAGTTCAGGCTAGATGATAGTGTTGTAGGTGTGGAATCCGATGAGGAGGTGCTAAGGGTTTCTTGGCAGTATTTTGGAGAGCATATCAAAATTTGTGTTGGAGATGTTTTAAAAGTTTTTGATAGACTTGCTGGTGCCTGCGAGGTAGAGGCTGGTTGTGACGTGGGCAGTGCCAATGATGTTGATACTAAATTTGATGTGATTATGGTTGATTTGGATTCAACTGATGCTAGGGATGGTCTAATTGCTCCGCCATTGGAGTTTGTTAGGAAGCATGTCCTTTTGTCAGCCAGATCAATTCTCTCTGATAATGGAATCCTAGCTCTAAATGTGATTCCTCCAAATACATCAATTTACAAGACATTGATCCATGAGTTTCGAGATGTTTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

21.3

Weight (kDa)

4.89

Isoelectric Point (pI)

25.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AciI CCGC 1 cut(s) 434
AclWI GGATC 1 cut(s) 544
AcsI RAATTY 3 cut(s) 6, 273, 374
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 62, 405
AhlI ACTAGT 1 cut(s) 178
AjiI CACGTC 1 cut(s) 346
AluBI AGCT 2 cut(s) 98, 506
AluI AGCT 2 cut(s) 98, 506
AlwI GGATC 1 cut(s) 544
ApoI RAATTY 3 cut(s) 6, 273, 374
BanI GGYRCC 1 cut(s) 317
BccI CCATC 1 cut(s) 413
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 5 cut(s) 99, 179, 194, 414, 503
BmgBI CACGTC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 319
BmsI GCATC 1 cut(s) 400
Bpu10I CCTNAGC 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 146
BsmI GAATGC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 476, 549
BspACI CCGC 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 1 cut(s) 544
BspT107I GGYRCC 1 cut(s) 317
BssMI GATC 2 cut(s) 476, 549
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 2 cut(s) 479, 552
BstMBI GATC 2 cut(s) 476, 549
BstNSI RCATGY 1 cut(s) 461
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 322
CviAII CATG 2 cut(s) 458, 554
CviJI RGCY 6 cut(s) 38, 98, 193, 335, 473, 506
CviKI_1 RGCY 6 cut(s) 38, 98, 193, 335, 473, 506
DdeI CTNAG 1 cut(s) 236
DpnI GATC 2 cut(s) 478, 551
DpnII GATC 2 cut(s) 476, 549
DraI TTTAAA 2 cut(s) 93, 294
EciI GGCGGA 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 6
FaeI CATG 2 cut(s) 461, 557
FaiI YATR 6 cut(s) 135, 267, 389, 459, 555, 577
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FatI CATG 2 cut(s) 457, 553
FokI GGATG 1 cut(s) 431
FspBI CTAG 5 cut(s) 99, 179, 194, 414, 503
Hin1II CATG 2 cut(s) 461, 557
HinfI GANTC 4 cut(s) 218, 401, 498, 517
Hpy188I TCNGA 4 cut(s) 76, 88, 223, 490
Hpy188III TCNNGA 1 cut(s) 563
HpyAV CCTTC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 345
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 2 cut(s) 461, 557
Kzo9I GATC 2 cut(s) 476, 549
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 6 cut(s) 40, 175, 300, 321, 334, 487
LweI GCATC 1 cut(s) 400
MaeI CTAG 5 cut(s) 99, 179, 194, 414, 503
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 341
MalI GATC 2 cut(s) 478, 551
MboI GATC 2 cut(s) 476, 549
MluCI AATT 8 cut(s) 6, 109, 171, 273, 374, 426, 480, 534
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 9 cut(s) 9, 59, 112, 119, 220, 223, 319, 325, 531
MseI TTAA 2 cut(s) 92, 293
Mva1269I GAATGC 1 cut(s) 108
NdeII GATC 2 cut(s) 476, 549
NlaIII CATG 2 cut(s) 461, 557
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 461
PctI GAATGC 1 cut(s) 108
PfeI GAWTC 4 cut(s) 218, 401, 498, 517
PspN4I GGNNCC 1 cut(s) 319
SaqAI TTAA 2 cut(s) 92, 293
Sau3AI GATC 2 cut(s) 476, 549
SetI ASST 9 cut(s) 20, 59, 100, 130, 214, 234, 330, 348, 508
SfaNI GCATC 1 cut(s) 400
SpeI ACTAGT 1 cut(s) 178
Sse9I AATT 8 cut(s) 6, 109, 171, 273, 374, 426, 480, 534
SsiI CCGC 1 cut(s) 434
SspMI CTAG 5 cut(s) 99, 179, 194, 414, 503
TaiI ACGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 562
TasI AATT 8 cut(s) 6, 109, 171, 273, 374, 426, 480, 534
TfiI GAWTC 4 cut(s) 218, 401, 498, 517
Tru1I TTAA 2 cut(s) 92, 293
Tru9I TTAA 2 cut(s) 92, 293
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspRI CASTG 1 cut(s) 358
XapI RAATTY 3 cut(s) 6, 273, 374
XceI RCATGY 1 cut(s) 461
XspI CTAG 5 cut(s) 99, 179, 194, 414, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.